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LotjaGi2g1v0449800.1

Overview

Field Value
Gene ID LotjaGi2g1v0449800
Transcript ID LotjaGi2g1v0449800.1
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Transcription factor TFIIIB component B; TAIR: AT4G39160.1 Homeodomain-like superfamily protein; Swiss-Prot: sp|O94481|TFC5_SCHPO Transcription factor TFIIIB component B''; TrEMBL-Plants: tr|A0A1J7GCE5|A0A1J7GCE5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0449800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:94338055..94344076) extracted from Lotus japonicus Gifu genome v1.2.

AAAAAATCATTAGGTTTTTATTTATTTTTTATTAGTTTATTTGGTTCAAGCATGGGCTGAGTGTACCTCTATTTATAGTT TTTGGGAGAATTAGGATTCACTTTTTAGGACTATGCATGCTTGATTCACTTGAGCATAACATCTATGTCAATTTAGAGTA TTAGATCCTTTTAAGCGGTATTTAAAAACTCGTGCTTGGTCGAACCCGGTTCGACCATTTAAAAAAAAACCACGGAAAGG ATGCGTTTTAGAAGACTGACAGATTAGGTCTCCTCACGGCTTAAAATCTTGTCTCTCTCTCTGCTTACGTGACGTCGCAA CCGCTTCATCGCCGTCGCAACTGGTTCACGTCGCCTGCACGAGCTCGCTACCTCGCCCAGTCCGCTCCGAGCCCACCGTG CCTGCAGGCTGCAGGAGGAGAGCAACAACGACGTCTTTGTCTCTGACCACAACGTCTCCTTCTTAGTCCTGGTGATCGTC TTTATGGTTGTTATCAGTATACTACAGGTACATGATGTCATTATTCTTCTTCTTATTTATCATATGGGATGGATGAAACT TCATTGTTATGGAACTTGGAATAGGAATTTGATGTTAGGAATGTACAAGAGTTATAGGTGAAGGAATTACATTATCACAT TTTGAGTTCAATTGTTTCAACTTGTGATTTTTATAATATTAAATGTTTGTTCACAAATATTTATAAAATTTGAGTTACTT TGATATGATTATCAACTGTCACAGTTCATTCACTATAATGTCATTTGATTCATGCACTATACATACTTGATTCCACTCAG TGGAGATTGACTTTGTTGTTATTTAAATAATTAGTCATATTAATATATTATTTCCGAGCTTAACCGCGTCTGCTATGAAA TGGCGAATTGATATTCTAGTCTAAGCTCTCTGGCAAGGATGGTGGGGTGGCTGCAATTTTGTTCAAAACCATACATTTTT TGACTTAGTTGCGTTGATATTTAAGTTCTGTTTGATAGGTGTGCCTGATCTGCTACTTACAATCTGCTGTTTTTCAGGAT AATTCTTGTATGGTTTTCCAGCTTTAGCTAGTATAGTCAACCTCATTAATTACCCCATGGATGCTTTTGATGATATTCTA TCCGGAGCTCCTGCTCCACGTGGTAAGTGCTACACTCAAAAGATACTGGGAAAGCTTCTTATTTTTATCATGTTCGTGTC ATGTGGTTATATTTTATTCTTTTGTAGCTCGTCGAGGTAGCAAGTTTATGCCAAAGGCCAAACTGAAACAGCTTCCTCAA AAGGAAATATCTGCATCAGAACACGCGACCTCATCTAAAGATGGAGAGAACGTGCCTGTTGCTTCATCAGCCACAAGCAC AAAATCAGGAGGAATTTTGAATGAATGTCATGATGCTGTTGCTTCAACTTTAAGTACATCAGCTGAAGATTCTATCAGGT CCAATCATCGACCACAGGAAGAACTTTCAAATTTGGAGGATGCCACAAAATCAGCATCTGAAGGCCTTGAGGCGGGTTTA GTCACTAACTCTATTCCTGAGACCAATCTCAATAATGGTAAGTTAGTTATGCTTTCACATTGTTTGTGTCTGTGAAGTCT CTTTGCTTCAGGTTGAACTTGTTCACGTGTCACAAGGCATAAGACTTCACTTGGATTGAAGTTAGTCTGATCCATTTGGT ATTTATTATTTGGTTTAGGGGCAAAACAACCAATCCACCCTGCTAATGCTGTAGAAAATGAAAATACTGTGGCTGCTCAA TCTACAACTAACTCATCCATCAGTAGGATGGAAGAGCCACCTAAAAGTGGGGAAGGTTCAATTCCTGATAGCAACAAAAA TTTGGAACATATTGATAATTCAGTGCCAGTTATCCCAGATGCAAACTTCAAGAGTGCTTTGGAGAATAATGCTGTAACAT TTGAGAGCAATATTCATTCAAATTTGAATTTTCGTTGTTTTTTTCCATGTAGTTCTACTGCTTCAGATGGATGTAATAAA CTTATGGAGCAAATTTTGTTTTCAGGCAGTGTCTGGGGAATCGGAATGGAATCCTTTCAGCGACGCCCTCCCTGATCCTG GCACTAGGAATGGTTAGTAATATCCCTGCTATCCTAAATGTGCTTCATATAACTGAAAAGGTAAACCTGTGTTTGTTTTA CTGTAGCTCGTAAGTTTCAACCCAAGATTAAGCCACGACCTAGAGTAAGCATTGCACCGGCTATCGCTTCTGCATCATCT AGTGATATGATGGAAAAGTCTACTCAGTTGCATGTTTCTTGCACAAATGAAGTTCAATCTTTTCAGTTTAGTGGTGATGG CATTTGTGGGCAAAATACATTCTCTGAAGACAAAAGAAACATGGCATCAGTTACTCCTTCCCAACCAGATTCCCTGAATG CTATGCCTTCGGAGGTTACAGCTCATGATGGAACTAGAGATTCGGCTTCTAGTTTTGGAAAACCAGCTCCTGATAATCTT ACCACCCAAGATCCATTAACCTTAAATGAAGCTGCAGTCTTCGAGGAGGATGATACTCACACTAACATTAGAAGGTTGGA AACAGAGGTGAAATTTGTGTGATTTCAAAAATATGATAGTTTCCTGTAAAATATGCCAAATAATTAATTGATCATTTTTT TGATATAAAATTGATCATGGTTATTATTTTTGTCAGGAAGTTGTGGACTTGAATACTGCCTGCTCAAATGGTGGCGTCTT TGATTATCAATCAATAGATTCTGCCACAGATCCAACTTCTGAAATTCCAGTGAATGAAGAATTGACAAATGCTGCAGATT GTCCCACGTTGGCTGATGTTTTGCATAAAGATGTTACTGTAGAAAAAGAAGTATATATCGGTTATTATGATTTATCGTGT ATTTATTTTCATTTTTCTTTTTATGAATCTTATTGTTGATGATTTCTTTTATTTCATTTACTATGTTTCTCAGGTTGCCA ATGGAAGAAAGAAGGATAGTTCCCTGAGGAAGCACAGAAGATCTACTGCTGGCGAGGAGGACAAAGGGGGTAAAACCGCA AGGCAGCTGAGAAAAAGTGCAGCTCGAGAACCTGCTAACAGCTCATTGAATAAGGATGTTGATGATGATGGTGACATTGA CCCTCTGTATAATTATAATATAGATGAACTAGAAGAAAATGATGATGAAGACGAACTAGATTATTCATCCAAGAAGAAAA CAACATCAACCAGTTCAAAGAAGAAATCTGTGGCTAAAAATGAAAAAACGTCTCAAAAGCGTAAGAAGTCTAATGATGAT TTAGAAAATACTACTAAAAAATCTCTGAAAAAGTTCTCTCATTCCACCCTACGAAGAAAACGATGTGGTAAACTTGCTAA GACTATTTGTGTTTTTAACTTTTTTTTTGTTTTGTTTATTTTATCTTGTATGATTGTTATAAGTGTTTTCCTTTTATAGA GGATCTGCTGAAAACTCCTGAAGATGAATGGGATCCTCGAAATATGCCTATAAAGGATATTATTATACTTGCAGAATATA AGGAGCGGTTGGCGGTGTGTATTCTCAATTTTAATCCCTGTATTACAATGCCCAACAATTGTTAGTATTGCATGATGGCT TAAGTTTTCACCAACTATTCTGTTCGTTTCTCTATGTAGAAAAAGGACCCAACAACTTCAAAAACATCTTCCACCAATCA AAGGTACACTCAACTTTAGTAACATTGCATATCTAGATTTTATTTAATTTTCTGGTCCTGTTAATCCTTGTCTAATATGA AAGTAGAATAAGTACACTGCAAAATCAATTAATTTGGAAAATTAACTGCTGTAAACATCTTATTTACTACAATTCTTTGT ATTTTTTTACAATCTTATACTATTGAATTAAGTTATATCTGACAATGTATATAAACTTATTTGATAAAGGAAATGCTTTT TATTCCTTCTCTTTTCTTTCCCTGGAGACAAGTGCATGTACTTGGACATAACCATCATATGGCTTAAGTTATTCTTCTCT CTTTTAACGATTCAATTACTTTCCTCCATCAAATTATCAAAATGGTCTGTAACTGAATGGAATGGATGTAATGCTGTCAA TAAAGTGCATTGTTTTCACTTTTGCTGGCCTAAGTTGGGTTGAGGGCTGAGGCAGGAAGAGGGCTATAGATTTGATAGTG GTGCTTTTCCCTGCGTCCACAATGAGATGTAGTCAGTGCAATTTAGGGATACAAATTGAAGGTCCTTGTATTTTTGGTGT TCGTCAAGGCACTCATGCTTTTGGATCACTACTTCCTCTCAGTATTTTGAGAACAGAAATGTATAGGGAAACATTATATA TATATAAAATGCGCTCCATATTATCCACTAGCTATTGTCACTGTCACTTCGAAGTTCTATGTGGTGCAGTAAATAGATTT TAGTTTGCAAAATATTTGTGTGCAGTGGTGGAGATCCTTTTTATGAAGCCGGTGCCAATTACGAAGAGGGGTTCTTTGGC TCAGAAAACCCAAATGATAATCAAGACACTGAAAATGTTACAGACACTACCGCTTTAATTAATTACCAGTCCTTCATGGA CAAGGCACCTAGGGGAAAATGGTCAAAACAAGACACTGAACTGTTTTATGAGGTATCTGCATAATTCTCACAAGATTTAT GATGTTATTATTTCTCTTAAACACAGCTGCATACCTACCAATTATATCATTTGTGATTTGGGGAATGGGAATGAGAGAAG GAGCAATCTTATTTAGTAAATTAACTAATTTTTTTTTAAACACAGGCTGTTAGGGAGTTTGGCACAGATTTTTCTATGAT TCAACAGCTTTTCCCTGATCGAACACGTCATCAAATTAAGTTGAAGTACAAGAAGGAAGAGCGGCAGCATCCTTTACAGT TATCCGATGCTGTGAATAGTCGTTCAAAAGGTTGAACTCTTTATTTACCATTCTGTATTGTTCTCAGACAGTGTTTACTC TTTAAGCAGAGTCCAGAAATGATCCTCAAGATTCATTTCTTTTGATGACTTATTCTTTACTTTATCATGGCTAAAAATAA GTTTTTAATGGTTTACTGTTCTTCACATATACTCTTATGATTACTGAATATCTATTCTTTTCCTCTGCTAGATCTGTCTC ATTTTAAAAAGGTGATTGAGCGGTTGCAACAAGCTTCTGACAAGGCTGAACAAGACGCCAATGAAGATGTTGAGGACCTA ACACCTGAAACTAATGTATGCATTTTCTGCCCATTTAGTTTATCTTCTGATGCCTCCTTTCTTTTGGTGTACATAGTTCA TGCTAATTTTCTTATAAATGCCATAATTATCAGATCACCAAGATAAATTGCCTTGATTATTTGTTCTCTCCTATTTTTTT CAATAGAAAATGATTAAATCCACATATTAGTAGCTTTCTGAAGTCTGAATAGTATATTATCCCCTAATTGGCTTTCAAAA CTCATTTTATGCATGCAGGAGGAGGTTGCAACAACTGAGAAGGACACTGACGATGTTGAAACAACTAAGCAGGACACCAA TGTTAAAGATCAGGAAGATTCTGCAGCAATTCATGATCCAGAACAACCTGATAATGATGATGATGATGAGGATTACTCTC AAATATGGTCTTATACAAGTGAATTTTGATGATTACTAGTAGTATTATGGTCCCATTGTGTTTTAATTTTTTTAATGTGA AATGTGATTGTTGTAACGTGAAATTCTTTTTATTACTGATTATTCACGAGATCACTTCTTTTGATTTTTATAATCAAGGT CCTGGGCATTTATTTCCTATTTTTTTTCCAATCTTGGTTACTCATGATATGATTTTTTTCCAATCTTGGTAGTTACAAAG AATATGATCCATGAAAAGCTATTCAAATAGCACCCTGGTAATTAAATGGATAGTTGTTATCTCTTTATGAGTTGGCAAAT TGCCCTTTAAAAATGATAAAAAAAAATTAGTTTCATTATTTTCATTCCATAAAATTTAAGGAAAATGAGAATGTATTTCA TTCCACAAAGGTGGTGTTTTTC
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0449800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCCTATAAAGGATATTATTATACTTGCAGAATATAAGGAGCGGTTGGCGAAAAAGGACCCAACAACTTCAAAAACATC TTCCACCAATCAAAGTGGTGGAGATCCTTTTTATGAAGCCGGTGCCAATTACGAAGAGGGGTTCTTTGGCTCAGAAAACC CAAATGATAATCAAGACACTGAAAATGTTACAGACACTACCGCTTTAATTAATTACCAGTCCTTCATGGACAAGGCACCT AGGGGAAAATGGTCAAAACAAGACACTGAACTGTTTTATGAGGCTGTTAGGGAGTTTGGCACAGATTTTTCTATGATTCA ACAGCTTTTCCCTGATCGAACACGTCATCAAATTAAGTTGAAGTACAAGAAGGAAGAGCGGCAGCATCCTTTACAGTTAT CCGATGCTGTGAATAGTCGTTCAAAAGATCTGTCTCATTTTAAAAAGGTGATTGAGCGGTTGCAACAAGCTTCTGACAAG GCTGAACAAGACGCCAATGAAGATGTTGAGGACCTAACACCTGAAACTAATGAGGAGGTTGCAACAACTGAGAAGGACAC TGACGATGTTGAAACAACTAAGCAGGACACCAATGTTAAAGATCAGGAAGATTCTGCAGCAATTCATGATCCAGAACAAC CTGATAATGATGATGATGATGAGGATTACTCTCAAATATGGTCTTATACAAGTGAATTTTGA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0449800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MPIKDIIILAEYKERLAKKDPTTSKTSSTNQSGGDPFYEAGANYEEGFFGSENPNDNQDTENVTDTTALINYQSFMDKAP RGKWSKQDTELFYEAVREFGTDFSMIQQLFPDRTRHQIKLKYKKEERQHPLQLSDAVNSRSKDLSHFKKVIERLQQASDK AEQDANEDVEDLTPETNEEVATTEKDTDDVETTKQDTNVKDQEDSAAIHDPEQPDNDDDDEDYSQIWSYTSEF
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR22929:SF0
1 223 223 8.2E-57 –
PANTHER
PTHR22929
1 223 223 8.2E-57 –
MobiDBLite
mobidb-lite
18 39 22 - –
MobiDBLite
mobidb-lite
22 36 15 - –
Pfam
PF15963
74 158 85 3.7E-29
IPR039467
ProSiteProfiles
PS51293
79 127 49 10.062
IPR017884
SMART
SM00717
80 128 49 3.2E-10
IPR001005
SUPERFAMILY
SSF46689
82 130 49 1.05E-11
IPR009057
CDD
cd00167
83 124 42 1.98964E-8
IPR001005
Gene3D
G3DSA:1.10.10.60
84 167 84 1.1E-10 –
Coils
Coil
144 171 28 - –
MobiDBLite
mobidb-lite
156 233 78 - –
MobiDBLite
mobidb-lite
178 212 35 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0449800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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