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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0451300 |
Transcript ID | LotjaGi2g1v0451300.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Pentatricopeptide repeat-containing protein; TAIR: AT1G06710.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9M9X9|PPR18_ARATH Pentatricopeptide repeat-containing protein At1g06710, mitochondrial; TrEMBL-Plants: tr|A0A0B2RS27|A0A0B2RS27_GLYSO Pentatricopeptide repeat-containing protein, mitochondrial; Found in the gene: LotjaGi2g1v0451300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:94449083..94453319) extracted from Lotus japonicus Gifu genome v1.2.
CAGAAAATGAACATGACAGCAAAACTATGTTGTCTCTCTCGGAGGTTCAGGGTTCTGTGTGGTTCTTTCTTAAACCCTAA ATCAAAATGAAGAAGACGGACTTCAACACTCTCCTCTCTCTCCGTCGCTCTCTCCGCTCTCTCCGATTCTCCACCACCAC TTTCTCCGACGACACCCTCCAAGGTTTGGTTCACCCCGACGACCCTATTCCCCATGATTCCCCAACCCCAACCCCTGATT TGTCACAAGACTACGCATTCCTCCGCAACTCCCTCCTCAATTCCTCATCGCAAACGCAAACCCTTGATTCCGCCAACGAC GTCGTTTCCATCTCAAATGCAATCAGAACCGGGTTCAGCACTGAAACCCAGAGCTTCATTCGCCACTTCCGGGGCAGGTT AAGCGAGTCTCTGGTGGTGCAGGTCATGAACCATGTCAAAGACCCTCACCTCTGTGTCAAGTTTTTCTTGTGGGCTGGTC GCCAAATTGGTTACACCCACACTCCACCAGTGTATGATGCTTTGCTTGAGCTACTTGGATGCAATGGTAATGATAGAGTG CCGTTGAAGTTCTTGCTTGATATCAGGGATGATGGTGATAAGGAGCTGCTTCGAAAGTTGCTCGATGTTTTGATTCACAA GTGTTGCCGCAATGGGTGGTGGAATATGGCATTGGAGGAGCTGGGCAGGCTCAAGGATTTTGGGTACAAGCCTTCGCGAG CCACTTACAATGCTCTGGTTCGGGTTTTTCTTGAAGCTGGCAAGTTGGATTCGGCTTATTTGGTGAAGAAAGAGATGTCG AGTTATGGGTTTGGTGTGGACGGGTATACACTGAGTTGTTTCGCGTATTCTCTCTGCAAAGCAGGGAGGTGCAGGGATGC TCTTGCTTTGATTGAGGAGGAGGAGTTTGTTCCTGATACGGTTTTTTATACTAGGATGATTTCTGGGTTATGTGAAGCTT CGCTTTTTGAAGAAGCTATGGATATGTTAGATACAATGCGGTCTAGTTCTTGCATTCCTAATGTTGTCACTTATAGGGTT TTGCTTTCTGGGTGTTTGAGAAAAGGACAGCTTGGCAGGTGTAAGAGAATTCTTAGTATGATGATTACGGAAGGCTGTTA TCCTAGTCGCCAAATGTTCAATTCTCTCGTACATGCTTATTGTAAATCAAAGGATTACTCTTATGCCTATAAGTTGTTTA AGAAAATGGTAAAATGTGGATGCCAGCCAGGATATCTGGTTTACAATATGCTCATTGGTAGTTTATGTGGCAATGAGGAA CAGCCAAGCTCGGATTTGTTAGAATTGGCGGAAAAGGCTTACAGTGAGATGCTCGATTCAGGGGCTGTATTGAATAAGGT CAATGTCAGCAACTTTGCGCGGTGTCTTTGTGGAGCTGGGAAGTTTGATAAAGCCTTTAAGATAATATGCGAAATGATGA GCAAGGGTTTCATCCCCGATGACAGCACATATTCTAAAGTGATTGGTTTCCTCTGTGATGCCTCCAAGGTAGAGAAGGCT TTTTTGTTGTTCAACGAAATGAAAAGGAATGGCATTGTTCCAAGTGTTTACACCTATACTATTTTAATTGATAGCTTTTG CAAAGCTGGGCTCATCCAACAAGCTCGCAAATGGTTTGATGAAATGTCAAGGGATGGTTGCGCCCCCAACGTGGTGACTT ATACTGCTCTTATTCATGCATACCTGAAAGCAAGAAAGGTGTTTGATGCAAATGAGCTATTTGAGATGATGTTGCGCGAA GAGTGCAAGCCTAATGTTGTTACGTATACAGCTTTAATTGATGGTCATTGTAAGGCTGGGCAGATCGAAAAAGCTTGCCA GATCTATGCCAGGATGCGAGGTGACATAGAATCCTCTGACATAGACATGTATTTTAAGTTAAATGACAACGACTGTGAAG GACCAAATGTCATTACATATGGGGCTTTGGTCGATGGTTTATGCAAAGCGAACAAGGTGAAAGAGGCCCGTGAATTATTG GATACCATGTCAGCTCATGGTTGTGAGCCTAACCAAATAGTGTATGATGCTGTTATAGATGGGTTTTGCAAAACCGGAAA GCTTCAGGACGCACAAGAGGTGTTTGCAAAGATGACAGAGCGTGGATACAGTCCAAATTTGTATACCTACAGCTCTTTAA TTGATTGTCTGTTTAAAGATAAACGACTGGATCTTGTTATGAAAGTGTTGTCCAAGATGCTAGAGAATTCTTGCATTCCC AATGTTGTTATTTACACAGAGATGATTGATGGTCTCTGTAAAGTTGGAAAGACAGATGAAGCTTACAAGCTCATGCTTAA GATGGAAGAAAAGGGTTGTCATCCAAATGTTGTAACGTATACTGCAATGATTGATGGCTTTGGGAAAGCAGGAAAAATTG AACAGTGCCTTGAGCTATTCAGAGATATGTGCTCAAAGAGCTGTGCTCCAAACTTTATAACCTATAGGGTCTTGATAAAT CATTTTTGTTCCAATGGCCTTCTTGATGAAGCTTACATACTTTTAGATGAAATGAAACAAACATATTGGCCGAGGCATTT ATCAAGTCACCGTAAAGTTATTGAGGGCTTTAATCGAGAATTTATAGCCTCGATTGGACTGTTAGATGAGTTGAGTGAGA ACGAATCAGTTCCTGTTGATTCTTTGTACAGAATTTTGATTGATAATTTTATCAAGGCTGGGAGACTGGAAATTGCCCTG AATCTGCTTGAAGAGATTTCATCATCTCCAAGCCCTTCAGTTGCAAACAAGTATCTGTATACTTCTTTAATTGAGAATTT GTCATATGCAAATAAGGTTGATAAAGCCTTGGAACTGTACGCAAGCATGATAAGTAAGAATGTTGTTCCGGAGCTCAGCA CATTTGTCCACCTCATCAAAGGCCTTACTAGGGTTGATAAGTGGCAAGAAGCACTACAATTATCAGACAGCATATGCCAG ATGGTTTGTCACACTTGCTCTCTCTAACTTTTTGAAGTACAAAAATTTCCAGTGACATTTTGCTCAGTCATTTTAAATTT GTCAACATTTAAAGCTTCCTTTACACATGTAGTTAGAAATATGCTTCAAACTTACAATAATTCCTAAGCAAACTGCTGTG TAGACGTAGCTGCGCTAGACCATTGATTTAATATTTTGGCATCTGTATTCTGACTCTGACCTTTCTTCTTTTATTTTTGC TTTTGCATTCCCTATCTATATTGCAGGATATCCACTGGATTTATGAAGAGCCAACCAGCATAAAGTAGGTTTCTGCTGTA CAGGTGAATGTAACTGAAGGAAAACGAATGCAAGCAGCATGGAAGAAATGGTCAAGCTGGTAAAAGATAACTCTCTTCTA ATCTCTAGTATTTTCGTTTTATGATGCTTTCCATTTATTATATTTTGATCTTCATTTGTAAAAGCGGGGTTTTGCAGTTA AGGTAATAACAACACCAATAATGGAAGCAGAAACAAGGGATTTTGAAGAAAAATGCTCTTCATATTTCATTGATCTCCAA GTTTCTGAATCCGGTGTATTTGTTCACCTATCATTACATCATGCTGGGGTTGATGATTGATTCTGTGGTCTAATTGATGC CAAGGTATATAAAATTAAATGTTGAGACTTGTTATCTTTTGGAGCAAAATTACAAACACAACAATGTTTTTGTTATTTAC TGAAATTCTAGTAGGAGATAAATTTTATATTAAGTGGAATCTTATTGTGTTATATTTCTTGTCTGTTTTTGAAGTTCAGA GGCAGATAATCATCTGCATTTTTCATTATCCAGAAGAACTAGGGAGCTAGGGAATCAGCTTTTTCACATGTTTGAGGAGC AAGGGGTTTCCCAAGTATCCTTGGCTCAATTCTTGTGTAGAGGCTCTGGAAATTAGAAGGACTGTGATTTGGCATTGTGC TCTTTCTACAGAAAATGTTATGTTTTGGACAGCCACATCATGCTCTCTTTAGGACGAGTTTGTGAAGGTGTATCTGAGCT TCATCTAGTTCATTCAGTATTTTGTCACTGTAAATTGATGTAAAAGCTAGCCTCGGCTACATAGAATTTTTGTTTTCATG TTATGATTTATTCTCTGCGGCCCGGTGTATGATCTTATCTATGGGCTTAGAAGCTTCAGTTCCGGTGTCATTCAATTTTT TTAACTGCCAATAATATCGGTGGATCCATTTGTTTTTTTAAATAATATAAAAAACAAAACTAGTACTCCTATTTGGC
CDS sequence (LotjaGi2g1v0451300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGAAGACGGACTTCAACACTCTCCTCTCTCTCCGTCGCTCTCTCCGCTCTCTCCGATTCTCCACCACCACTTTCTC CGACGACACCCTCCAAGGTTTGGTTCACCCCGACGACCCTATTCCCCATGATTCCCCAACCCCAACCCCTGATTTGTCAC AAGACTACGCATTCCTCCGCAACTCCCTCCTCAATTCCTCATCGCAAACGCAAACCCTTGATTCCGCCAACGACGTCGTT TCCATCTCAAATGCAATCAGAACCGGGTTCAGCACTGAAACCCAGAGCTTCATTCGCCACTTCCGGGGCAGGTTAAGCGA GTCTCTGGTGGTGCAGGTCATGAACCATGTCAAAGACCCTCACCTCTGTGTCAAGTTTTTCTTGTGGGCTGGTCGCCAAA TTGGTTACACCCACACTCCACCAGTGTATGATGCTTTGCTTGAGCTACTTGGATGCAATGGTAATGATAGAGTGCCGTTG AAGTTCTTGCTTGATATCAGGGATGATGGTGATAAGGAGCTGCTTCGAAAGTTGCTCGATGTTTTGATTCACAAGTGTTG CCGCAATGGGTGGTGGAATATGGCATTGGAGGAGCTGGGCAGGCTCAAGGATTTTGGGTACAAGCCTTCGCGAGCCACTT ACAATGCTCTGGTTCGGGTTTTTCTTGAAGCTGGCAAGTTGGATTCGGCTTATTTGGTGAAGAAAGAGATGTCGAGTTAT GGGTTTGGTGTGGACGGGTATACACTGAGTTGTTTCGCGTATTCTCTCTGCAAAGCAGGGAGGTGCAGGGATGCTCTTGC TTTGATTGAGGAGGAGGAGTTTGTTCCTGATACGGTTTTTTATACTAGGATGATTTCTGGGTTATGTGAAGCTTCGCTTT TTGAAGAAGCTATGGATATGTTAGATACAATGCGGTCTAGTTCTTGCATTCCTAATGTTGTCACTTATAGGGTTTTGCTT TCTGGGTGTTTGAGAAAAGGACAGCTTGGCAGGTGTAAGAGAATTCTTAGTATGATGATTACGGAAGGCTGTTATCCTAG TCGCCAAATGTTCAATTCTCTCGTACATGCTTATTGTAAATCAAAGGATTACTCTTATGCCTATAAGTTGTTTAAGAAAA TGGTAAAATGTGGATGCCAGCCAGGATATCTGGTTTACAATATGCTCATTGGTAGTTTATGTGGCAATGAGGAACAGCCA AGCTCGGATTTGTTAGAATTGGCGGAAAAGGCTTACAGTGAGATGCTCGATTCAGGGGCTGTATTGAATAAGGTCAATGT CAGCAACTTTGCGCGGTGTCTTTGTGGAGCTGGGAAGTTTGATAAAGCCTTTAAGATAATATGCGAAATGATGAGCAAGG GTTTCATCCCCGATGACAGCACATATTCTAAAGTGATTGGTTTCCTCTGTGATGCCTCCAAGGTAGAGAAGGCTTTTTTG TTGTTCAACGAAATGAAAAGGAATGGCATTGTTCCAAGTGTTTACACCTATACTATTTTAATTGATAGCTTTTGCAAAGC TGGGCTCATCCAACAAGCTCGCAAATGGTTTGATGAAATGTCAAGGGATGGTTGCGCCCCCAACGTGGTGACTTATACTG CTCTTATTCATGCATACCTGAAAGCAAGAAAGGTGTTTGATGCAAATGAGCTATTTGAGATGATGTTGCGCGAAGAGTGC AAGCCTAATGTTGTTACGTATACAGCTTTAATTGATGGTCATTGTAAGGCTGGGCAGATCGAAAAAGCTTGCCAGATCTA TGCCAGGATGCGAGGTGACATAGAATCCTCTGACATAGACATGTATTTTAAGTTAAATGACAACGACTGTGAAGGACCAA ATGTCATTACATATGGGGCTTTGGTCGATGGTTTATGCAAAGCGAACAAGGTGAAAGAGGCCCGTGAATTATTGGATACC ATGTCAGCTCATGGTTGTGAGCCTAACCAAATAGTGTATGATGCTGTTATAGATGGGTTTTGCAAAACCGGAAAGCTTCA GGACGCACAAGAGGTGTTTGCAAAGATGACAGAGCGTGGATACAGTCCAAATTTGTATACCTACAGCTCTTTAATTGATT GTCTGTTTAAAGATAAACGACTGGATCTTGTTATGAAAGTGTTGTCCAAGATGCTAGAGAATTCTTGCATTCCCAATGTT GTTATTTACACAGAGATGATTGATGGTCTCTGTAAAGTTGGAAAGACAGATGAAGCTTACAAGCTCATGCTTAAGATGGA AGAAAAGGGTTGTCATCCAAATGTTGTAACGTATACTGCAATGATTGATGGCTTTGGGAAAGCAGGAAAAATTGAACAGT GCCTTGAGCTATTCAGAGATATGTGCTCAAAGAGCTGTGCTCCAAACTTTATAACCTATAGGGTCTTGATAAATCATTTT TGTTCCAATGGCCTTCTTGATGAAGCTTACATACTTTTAGATGAAATGAAACAAACATATTGGCCGAGGCATTTATCAAG TCACCGTAAAGTTATTGAGGGCTTTAATCGAGAATTTATAGCCTCGATTGGACTGTTAGATGAGTTGAGTGAGAACGAAT CAGTTCCTGTTGATTCTTTGTACAGAATTTTGATTGATAATTTTATCAAGGCTGGGAGACTGGAAATTGCCCTGAATCTG CTTGAAGAGATTTCATCATCTCCAAGCCCTTCAGTTGCAAACAAGTATCTGTATACTTCTTTAATTGAGAATTTGTCATA TGCAAATAAGGTTGATAAAGCCTTGGAACTGTACGCAAGCATGATAAGTAAGAATGTTGTTCCGGAGCTCAGCACATTTG TCCACCTCATCAAAGGCCTTACTAGGGTTGATAAGTGGCAAGAAGCACTACAATTATCAGACAGCATATGCCAGATGGAT ATCCACTGGATTTATGAAGAGCCAACCAGCATAAAGTAG
Protein sequence (LotjaGi2g1v0451300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKKTDFNTLLSLRRSLRSLRFSTTTFSDDTLQGLVHPDDPIPHDSPTPTPDLSQDYAFLRNSLLNSSSQTQTLDSANDVV SISNAIRTGFSTETQSFIRHFRGRLSESLVVQVMNHVKDPHLCVKFFLWAGRQIGYTHTPPVYDALLELLGCNGNDRVPL KFLLDIRDDGDKELLRKLLDVLIHKCCRNGWWNMALEELGRLKDFGYKPSRATYNALVRVFLEAGKLDSAYLVKKEMSSY GFGVDGYTLSCFAYSLCKAGRCRDALALIEEEEFVPDTVFYTRMISGLCEASLFEEAMDMLDTMRSSSCIPNVVTYRVLL SGCLRKGQLGRCKRILSMMITEGCYPSRQMFNSLVHAYCKSKDYSYAYKLFKKMVKCGCQPGYLVYNMLIGSLCGNEEQP SSDLLELAEKAYSEMLDSGAVLNKVNVSNFARCLCGAGKFDKAFKIICEMMSKGFIPDDSTYSKVIGFLCDASKVEKAFL LFNEMKRNGIVPSVYTYTILIDSFCKAGLIQQARKWFDEMSRDGCAPNVVTYTALIHAYLKARKVFDANELFEMMLREEC KPNVVTYTALIDGHCKAGQIEKACQIYARMRGDIESSDIDMYFKLNDNDCEGPNVITYGALVDGLCKANKVKEARELLDT MSAHGCEPNQIVYDAVIDGFCKTGKLQDAQEVFAKMTERGYSPNLYTYSSLIDCLFKDKRLDLVMKVLSKMLENSCIPNV VIYTEMIDGLCKVGKTDEAYKLMLKMEEKGCHPNVVTYTAMIDGFGKAGKIEQCLELFRDMCSKSCAPNFITYRVLINHF CSNGLLDEAYILLDEMKQTYWPRHLSSHRKVIEGFNREFIASIGLLDELSENESVPVDSLYRILIDNFIKAGRLEIALNL LEEISSSPSPSVANKYLYTSLIENLSYANKVDKALELYASMISKNVVPELSTFVHLIKGLTRVDKWQEALQLSDSICQMD IHWIYEEPTSIK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
MobiDBLite | 32 | 52 | 21 | - | – | |
Gene3D | 67 | 270 | 204 | 1.1E-16 | ||
ProSiteProfiles | 175 | 209 | 35 | 8.1 | ||
PANTHER | 181 | 299 | 119 | 2.8E-178 | – | |
ProSiteProfiles | 210 | 244 | 35 | 9.427 | ||
TIGRFAM | 213 | 245 | 33 | 1.6E-4 | ||
Pfam | 213 | 242 | 30 | 0.015 | ||
ProSiteProfiles | 245 | 275 | 31 | 5.689 | ||
Gene3D | 271 | 387 | 117 | 3.7E-30 | ||
PANTHER | 274 | 478 | 205 | 2.8E-178 | – | |
Pfam | 276 | 324 | 49 | 2.7E-13 | ||
ProSiteProfiles | 277 | 311 | 35 | 11.455 | ||
TIGRFAM | 281 | 313 | 33 | 2.0E-7 | ||
ProSiteProfiles | 312 | 346 | 35 | 10.786 | ||
TIGRFAM | 314 | 347 | 34 | 2.6E-5 | ||
ProSiteProfiles | 347 | 381 | 35 | 12.332 | ||
Pfam | 350 | 394 | 45 | 2.0E-9 | ||
TIGRFAM | 350 | 381 | 32 | 5.2E-8 | ||
ProSiteProfiles | 382 | 422 | 41 | 5.601 | ||
Gene3D | 388 | 519 | 132 | 1.6E-30 | ||
ProSiteProfiles | 423 | 457 | 35 | 9.843 | ||
TIGRFAM | 432 | 458 | 27 | 2.1E-6 | ||
Pfam | 432 | 455 | 24 | 0.011 | ||
PANTHER | 454 | 605 | 152 | 2.8E-178 | – | |
ProSiteProfiles | 458 | 492 | 35 | 11.729 | ||
TIGRFAM | 461 | 494 | 34 | 6.1E-8 | ||
Pfam | 465 | 506 | 42 | 1.7E-14 | ||
ProSiteProfiles | 493 | 527 | 35 | 13.285 | ||
TIGRFAM | 495 | 529 | 35 | 7.0E-11 | ||
Gene3D | 520 | 592 | 73 | 3.9E-25 | ||
Pfam | 527 | 576 | 50 | 5.2E-17 | ||
ProSiteProfiles | 528 | 562 | 35 | 12.167 | ||
TIGRFAM | 530 | 564 | 35 | 1.2E-8 | ||
ProSiteProfiles | 563 | 593 | 31 | 10.95 | ||
TIGRFAM | 565 | 591 | 27 | 4.1E-8 | ||
Gene3D | 593 | 678 | 86 | 2.4E-23 | ||
Pfam | 613 | 642 | 30 | 9.2E-11 | ||
PANTHER | 613 | 742 | 130 | 2.8E-178 | – | |
ProSiteProfiles | 614 | 648 | 35 | 13.033 | ||
TIGRFAM | 616 | 649 | 34 | 5.6E-9 | ||
Pfam | 648 | 697 | 50 | 2.3E-14 | ||
ProSiteProfiles | 649 | 683 | 35 | 12.967 | ||
TIGRFAM | 652 | 684 | 33 | 8.5E-7 | ||
Gene3D | 679 | 744 | 66 | 6.0E-20 | ||
PANTHER | 683 | 827 | 145 | 2.8E-178 | – | |
ProSiteProfiles | 684 | 718 | 35 | 10.994 | ||
TIGRFAM | 686 | 720 | 35 | 1.1E-7 | ||
Pfam | 718 | 766 | 49 | 5.9E-18 | ||
ProSiteProfiles | 719 | 753 | 35 | 13.176 | ||
TIGRFAM | 721 | 755 | 35 | 4.9E-9 | ||
Gene3D | 745 | 820 | 76 | 1.0E-25 | ||
ProSiteProfiles | 754 | 788 | 35 | 12.858 | ||
TIGRFAM | 756 | 789 | 34 | 2.1E-10 | ||
Pfam | 784 | 817 | 34 | 4.4E-10 | ||
ProSiteProfiles | 789 | 819 | 31 | 9.712 | ||
Gene3D | 837 | 970 | 134 | 5.0E-17 | ||
PANTHER | 845 | 957 | 113 | 2.8E-178 | – | |
ProSiteProfiles | 857 | 891 | 35 | 7.037 | ||
Pfam | 861 | 885 | 25 | 0.47 | ||
ProSiteProfiles | 894 | 928 | 35 | 10.446 | ||
TIGRFAM | 896 | 928 | 33 | 2.9E-5 | ||
Pfam | 897 | 926 | 30 | 0.009 | ||
ProSiteProfiles | 929 | 963 | 35 | 6.675 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0451300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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