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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0451400 |
| Transcript ID | LotjaGi2g1v0451400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT5G13270.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9LYU9|PP378_ARATH Pentatricopeptide repeat-containing protein At5g13270, chloroplastic; TrEMBL-Plants: tr|I1JAN8|I1JAN8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0451400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:94458906..94463654) extracted from Lotus japonicus Gifu genome v1.2.
CAGGTTTGCAAAATCAATCAATTTTTGGGAGAAGCCTAACTTAATGATGTCAGAATTGATTCTAAAAAAAAGAGAAACTG ATCAAAAATATGTTTGATTTGAAATTCCCACAGGGGTGGATCAAACTGATTCTCAAAGACAATTAGTAGTTACTAATTAA TTTTTCTCCTATAACTCTATAAGCTTTTACCTGAATAGCTCTGTGTTCTTTGTGAGAGGCAAGACATGCTGAGCAAAGTG CTCCATTCATACAGTCCAAGCAATACATATTGCATTCACTTTTGTGGGAATCTGAGTGGACTTTGCATTGAACAAAGAAG CTTGTTTGGAGAATTGGCCTCAGCCATGGTGGCCATTTGTTTCCTTCATCATGCTTCACAACATCATCTTCATTGAGAGC TCTCACACCAACTGCACCTTCTCCACCCCCCTAATTCCATATGAACAATAACAAATAACAATTTACAAACAAATGAGGAA GAGAAGAAAAAAGTAATAAAAGATTGAAAAACTAGAAAAAGAAATTCCCATGTGAGTGCATGTGTAAAGGGGTTGCATTG ATTGTTGATACTAGTACTAACCATGATTCTTGGTAGTGTAAATTTGGCTATGATTTCTCTATGGTGTGTTAACAACCAAG TTTTGCTTTGGAGAAAAACAAAAAAGGGAACTTTCTCTCTAAATATTGTATGCTATCTTTGCAGAGAGACAAAAGAGAGA GGAGAGAAGTTTGCAACTTTAGAAGTGGGGTTATAAGATTGTAGTAGTGGGTGGAGGATGATGAAGGGAGAAAGTAAAGG TTGTGTTTATTATCTTTGCCTTCTTCAAAGTCCACAACCAAACCTCACTCCGAACCAAAACCAAATAGCATACCTTATTC ATAAAGAACAATGACTTGACCAGGTGTAGTAACCTTCTGTTTTTTTTCCTTCTTATTATTTAATTTCTATTATTAATAGT GTGTTTGGTTAAGATTATTTTATGTTTGCAACAGTTTATGGCTGCGGAGGGTACTTTTGAGGAAAATTGTTTTTAAAGTT AATTTATTATCAATTTGCCATAAGTTTATGCAAATTTTATTCTAATTTAACATAGTCAAAGTAATTTAGTTTTTTTTTTT AATTAGAAGTTATAGAATTTTAATGTTATGAACTCCCACTTCAATTTTCAGTTCATGAATTATGCATAATTTATATAGAC CTAGTTAAGTAGTGTTGCTCAATTTTGTTTGGCTTACTTTTTGTGGCTGAAAATTTTTGAAGCTGGGACATGGTAGGTTT GGATTTGGCAAGTTGGCTACAATGTTTGTTTCCTTGATGGACACTTGGAAGGTTGAGATGTTGATAGGTGGAGGAATATA AAGATTAGTCAGCATTTATTTATTTAATGGAATATAAATATTGGAAAGTGGATAGCCATCTGTTGGTTTGGTAACACAGC AAGTGGAGCCCTAATTAACACAAATATTTTAATTATAAAATGCATAAAAAACTTTTATTTCAATAAAATTTAAAAAATTA GAAAAATTAATTAAAGATAATTAAATTAGTTTAAAAAAGTATTTATTATTAGATTTTTTTTATAGATATTTATGAAAAAA AGGTTAAGAGTTAACCAAAATGTAGCCTATTTTTCATAGTAGATGAAACCAAGGAATGTTTTCCAGCTTGGGCAAACCAG ACAGAAACCAGCTTCACTCTGATTCGAATCAACATTATAGGAGTGAGGTCCGTCATCTCTAATCTGATCTTATCAATATG TTTTTATATTTTCACTTTCTTTAAATGATTCTAGTGTTGCCACATTTTTCAATTATGAGTAGAATAATGAGTTGCTCTAA ATTATTCTGGGTGGTTAAATGCAAGTGAACTGTGTTGCACGCTACATGTTTGATAAAATGTCTGAACTAAACTAGAGTAT TATTTTTTGTGTGGCAAAATTGTATCTGTGATAAATTAAACATGTTAACAAATGTCAATGCTATTTGGCTTTCTTTATAA CTGTTTACAGTTGTGAGTGGTTCATATTCTAAGCCAGCAAAACTTCATAACCTTTTATCTGACCCCTTATTTTCTGTCTT TTCAGATCATATCAGGCTCTATAACAAAAGAGATCAGATTGAATATTCAGATTGTTCATATATAGTTGGTGCTTGGGTTA TTTGAGTGACTTCCCATCCATTGTCATCCTTATCATTGACTTGTTTTCTCAAGTTGGGTTCTCTTGTTGGATCTGAGAGC AAGGATACAAACAAGCTAAATGTACACAATAACTTGCCGGTGCTCTTGGGTACATTCCAATTCTTCAGTGGTGGCAGTAG CTAATGATAAAATTAATGATGTGAGACAGACTAATTTTGCAAAAATCCCTTCATGGATCTCTTTGAAATGCAGTCAGTCT TCTTTGAAAACCCATAAAAATCAACAAGGCCAAGTTGAAAACTTGCATTTGATTTCCTTAGCCAAAGCTGGTAAGCTTAG AGAAGTGCATGAATTCATCAGAAGCATGGATGAAGCATGTATTTCCATTGATCCCCGATCATACAAACACCTCTTTAAAA TGTGTGGAATGTTGGGAGCTCTGTCTGATGGGAAATTATTTCATAATAGATTGCAGAGAATGGCTAATGGCAATAAGTTC ATTGACAATTGTATACTTCAAATGTATTGCGACTGTAAGAGTTTCACAGCTGCAGAGAGAGTCTTTGATGAAATGGTTGA TCGGGATTTGTTCTCTTGGGCCACCATCATATCTGCTTATGCTGAGGAAGGGCATATGATTGGAGCTATTAGATTGTTCT CGCGTATGCTGGATTTGGGAATCAAGCCGAGCTCTTCTATCTTCTGTACTCTTCTAGGGTCCTTTGCAGATCCTTCGGCG TTGGAGCTTGGTAAACAACTACATTCTCAGCTGATAAGGATTGGATTTACTGCTGATGTTTCAATTGAGACGACACTCTC CAATATGTACATCAAGTGTGGGTGGTTGGATGGTGCTGAAGTCGCCACCAATAAGATGACTACAAAAAATGCTGTGGCTT GCACAGGATTGATGGTAGGCTATACTCAAGCTTTAAGACACACAGATGCTCTGTTATTATTTGCCAAGATGATAAAAGAA GGTGTGAAGTTGGATGAGTTTGTCTTCTCAATTGTGCTAAAAGCGTGTGCTGCTTTAAAAGACATAAACACTGGAAGGCA GATTCATAGTTACAGTGTAAAACTTGGCTTGGAATCTGAGGTCTCAGTTGGTACTCCACTAGTGGACTTTTATTCTAAGT GTGGAAGGTTTGAAGCTGCATGTCAAGCTTTTGAGAGCATACGTGAACCAAATGATTTTTCATGGAGTGCTATAATCACT GGATACTGCCAAAGTGGTAGATTTGATAAGGCTCTTGAAACTTTTAAAAATATAAGAAGTAAAGGAGTGATATTGAATTC ATTCGTCTATACCAACATTTTTCAAGCATGCTCTGCTATCTCAGATTTAGTTTATGGTGCTCAGGTTCACGCAGATGCAA TAAAAAAGGGGCTAGTTCAATACCTTTCCGGGGAGAGTGCTATGATCACGATGTACTCAAAATGCGGAAAATTGGACTAT GCATATCAAGCATTCTTGACTATAGAGAAACCTGATACTATTGCATGGACTGCTATCATATGTGCTTATGCTTACCATGG AAAATCTGAAGCTGTGAAGCTTTTCCACAAGATGCTGAGGTCTGGTGTAAGGCCAAATGCTGTCACATTCATTGGTTTGT TAAATGCTTGTAGTCATTCAGGTTTAGTTAAAGAAGGAAAGCAGTTTTTAGATTCAATGAGTGTGAAATACGGCGTCGAC CCAACAATTGATCATTACAATTGCATGATTGGTGTATACTCTCGTGCTGGATTATTACAGGAGGCTCTGGAGATGATAAG GAGTATGCCATTTGAACCTGATACATTAAGTTGGAAAACTTTACTAGGAGGATGTTGGAGCCATCGGAATCTCGAGACCG CGTCGATTGCAGCTGGAAAAATCTTTCACCTTGACCCACTTGACTCTGCTACTTATGTGACCATGTTCAACTTACATGCT TTGGCTGGGAACTGGGATGAAGCAGCCCAATATAGAAAGATGATGGCTGAAAGGAACTTGAGGAAGGAAGTGAGCTGCAG TTGGATTATTGTGAAGGGTAAAGTGCACCGTTTCGTGGTAGGTGATAGGCACCATCCTCAAACAGAAGAGATATACTCTA AACTAAAACAGCTATATTCTGCTGTCAAAATGGGTGAGGAGAGCCTTCTTAATACAGAGGATGCACTATGCGGCTTTACA GAACGGAAAGAGCAGCTTCTTGATCATAGTGAGAGACTTGCTATAGCCTATGGTCTGATATGCACGGAAGCTGAGACCCC CATTTTGGTGTTCAAGAATACTAGATCATGCAAAGACTGCCATGATTTTGCAAAAAGAGTTTCAACTATAACTGGTCGTG AATTAGTTGTGAGAGATGCCAATAGGTTCCATCATATTAAGTCAGGGGAATGTTCTTGTAATGACTATTGGTAATTTTTA GCTTATTTCTTAAAGCTGCATCAGTTTATGAAATAACAAGGAGATTCGAAGGATTTCATCAGTGAAGTGCGGGCAAAATC CATTAAGTTAATGTTGTTCCCTTGCTTATATTTTATATGTGAACGCATGTAAACAAACTTTCATTTTTAATCCATCATGC GACAATGATTTTTTTTTCTAGGTTGGGAG
CDS sequence (LotjaGi2g1v0451400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTACACAATAACTTGCCGGTGCTCTTGGGTACATTCCAATTCTTCAGTGGTGGCAGTAGCTAATGATAAAATTAATGA TGTGAGACAGACTAATTTTGCAAAAATCCCTTCATGGATCTCTTTGAAATGCAGTCAGTCTTCTTTGAAAACCCATAAAA ATCAACAAGGCCAAGTTGAAAACTTGCATTTGATTTCCTTAGCCAAAGCTGGTAAGCTTAGAGAAGTGCATGAATTCATC AGAAGCATGGATGAAGCATGTATTTCCATTGATCCCCGATCATACAAACACCTCTTTAAAATGTGTGGAATGTTGGGAGC TCTGTCTGATGGGAAATTATTTCATAATAGATTGCAGAGAATGGCTAATGGCAATAAGTTCATTGACAATTGTATACTTC AAATGTATTGCGACTGTAAGAGTTTCACAGCTGCAGAGAGAGTCTTTGATGAAATGGTTGATCGGGATTTGTTCTCTTGG GCCACCATCATATCTGCTTATGCTGAGGAAGGGCATATGATTGGAGCTATTAGATTGTTCTCGCGTATGCTGGATTTGGG AATCAAGCCGAGCTCTTCTATCTTCTGTACTCTTCTAGGGTCCTTTGCAGATCCTTCGGCGTTGGAGCTTGGTAAACAAC TACATTCTCAGCTGATAAGGATTGGATTTACTGCTGATGTTTCAATTGAGACGACACTCTCCAATATGTACATCAAGTGT GGGTGGTTGGATGGTGCTGAAGTCGCCACCAATAAGATGACTACAAAAAATGCTGTGGCTTGCACAGGATTGATGGTAGG CTATACTCAAGCTTTAAGACACACAGATGCTCTGTTATTATTTGCCAAGATGATAAAAGAAGGTGTGAAGTTGGATGAGT TTGTCTTCTCAATTGTGCTAAAAGCGTGTGCTGCTTTAAAAGACATAAACACTGGAAGGCAGATTCATAGTTACAGTGTA AAACTTGGCTTGGAATCTGAGGTCTCAGTTGGTACTCCACTAGTGGACTTTTATTCTAAGTGTGGAAGGTTTGAAGCTGC ATGTCAAGCTTTTGAGAGCATACGTGAACCAAATGATTTTTCATGGAGTGCTATAATCACTGGATACTGCCAAAGTGGTA GATTTGATAAGGCTCTTGAAACTTTTAAAAATATAAGAAGTAAAGGAGTGATATTGAATTCATTCGTCTATACCAACATT TTTCAAGCATGCTCTGCTATCTCAGATTTAGTTTATGGTGCTCAGGTTCACGCAGATGCAATAAAAAAGGGGCTAGTTCA ATACCTTTCCGGGGAGAGTGCTATGATCACGATGTACTCAAAATGCGGAAAATTGGACTATGCATATCAAGCATTCTTGA CTATAGAGAAACCTGATACTATTGCATGGACTGCTATCATATGTGCTTATGCTTACCATGGAAAATCTGAAGCTGTGAAG CTTTTCCACAAGATGCTGAGGTCTGGTGTAAGGCCAAATGCTGTCACATTCATTGGTTTGTTAAATGCTTGTAGTCATTC AGGTTTAGTTAAAGAAGGAAAGCAGTTTTTAGATTCAATGAGTGTGAAATACGGCGTCGACCCAACAATTGATCATTACA ATTGCATGATTGGTGTATACTCTCGTGCTGGATTATTACAGGAGGCTCTGGAGATGATAAGGAGTATGCCATTTGAACCT GATACATTAAGTTGGAAAACTTTACTAGGAGGATGTTGGAGCCATCGGAATCTCGAGACCGCGTCGATTGCAGCTGGAAA AATCTTTCACCTTGACCCACTTGACTCTGCTACTTATGTGACCATGTTCAACTTACATGCTTTGGCTGGGAACTGGGATG AAGCAGCCCAATATAGAAAGATGATGGCTGAAAGGAACTTGAGGAAGGAAGTGAGCTGCAGTTGGATTATTGTGAAGGGT AAAGTGCACCGTTTCGTGGTAGGTGATAGGCACCATCCTCAAACAGAAGAGATATACTCTAAACTAAAACAGCTATATTC TGCTGTCAAAATGGGTGAGGAGAGCCTTCTTAATACAGAGGATGCACTATGCGGCTTTACAGAACGGAAAGAGCAGCTTC TTGATCATAGTGAGAGACTTGCTATAGCCTATGGTCTGATATGCACGGAAGCTGAGACCCCCATTTTGGTGTTCAAGAAT ACTAGATCATGCAAAGACTGCCATGATTTTGCAAAAAGAGTTTCAACTATAACTGGTCGTGAATTAGTTGTGAGAGATGC CAATAGGTTCCATCATATTAAGTCAGGGGAATGTTCTTGTAATGACTATTGGTAA
Protein sequence (LotjaGi2g1v0451400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYTITCRCSWVHSNSSVVAVANDKINDVRQTNFAKIPSWISLKCSQSSLKTHKNQQGQVENLHLISLAKAGKLREVHEFI RSMDEACISIDPRSYKHLFKMCGMLGALSDGKLFHNRLQRMANGNKFIDNCILQMYCDCKSFTAAERVFDEMVDRDLFSW ATIISAYAEEGHMIGAIRLFSRMLDLGIKPSSSIFCTLLGSFADPSALELGKQLHSQLIRIGFTADVSIETTLSNMYIKC GWLDGAEVATNKMTTKNAVACTGLMVGYTQALRHTDALLLFAKMIKEGVKLDEFVFSIVLKACAALKDINTGRQIHSYSV KLGLESEVSVGTPLVDFYSKCGRFEAACQAFESIREPNDFSWSAIITGYCQSGRFDKALETFKNIRSKGVILNSFVYTNI FQACSAISDLVYGAQVHADAIKKGLVQYLSGESAMITMYSKCGKLDYAYQAFLTIEKPDTIAWTAIICAYAYHGKSEAVK LFHKMLRSGVRPNAVTFIGLLNACSHSGLVKEGKQFLDSMSVKYGVDPTIDHYNCMIGVYSRAGLLQEALEMIRSMPFEP DTLSWKTLLGGCWSHRNLETASIAAGKIFHLDPLDSATYVTMFNLHALAGNWDEAAQYRKMMAERNLRKEVSCSWIIVKG KVHRFVVGDRHHPQTEEIYSKLKQLYSAVKMGEESLLNTEDALCGFTERKEQLLDHSERLAIAYGLICTEAETPILVFKN TRSCKDCHDFAKRVSTITGRELVVRDANRFHHIKSGECSCNDYW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 56 | 90 | 35 | 5.097 | ||
| Gene3D | 63 | 261 | 199 | 3.7E-25 | ||
| ProSiteProfiles | 91 | 121 | 31 | 5.514 | ||
| PANTHER | 97 | 200 | 104 | 3.2E-96 | – | |
| ProSiteProfiles | 125 | 155 | 31 | 7.958 | ||
| Pfam | 130 | 156 | 27 | 0.12 | ||
| TIGRFAM | 130 | 157 | 28 | 7.2E-4 | ||
| ProSiteProfiles | 156 | 190 | 35 | 11.794 | ||
| TIGRFAM | 158 | 191 | 34 | 4.4E-6 | ||
| Pfam | 158 | 188 | 31 | 1.4E-4 | ||
| ProSiteProfiles | 191 | 225 | 35 | 6.095 | ||
| PANTHER | 208 | 315 | 108 | 3.2E-96 | – | |
| ProSiteProfiles | 226 | 256 | 31 | 5.185 | ||
| ProSiteProfiles | 257 | 291 | 35 | 8.55 | ||
| Pfam | 259 | 289 | 31 | 0.12 | ||
| Gene3D | 262 | 430 | 169 | 2.7E-30 | ||
| ProSiteProfiles | 292 | 326 | 35 | 7.026 | ||
| PANTHER | 298 | 408 | 111 | 3.2E-96 | – | |
| ProSiteProfiles | 327 | 357 | 31 | 5.985 | ||
| SUPERFAMILY | 339 | 624 | 286 | 8.01E-5 | ||
| Pfam | 357 | 404 | 48 | 1.0E-8 | ||
| ProSiteProfiles | 358 | 392 | 35 | 12.025 | ||
| TIGRFAM | 360 | 393 | 34 | 2.2E-7 | ||
| ProSiteProfiles | 393 | 427 | 35 | 5.985 | ||
| PANTHER | 413 | 621 | 209 | 3.2E-96 | – | |
| Gene3D | 431 | 590 | 160 | 5.3E-38 | ||
| Pfam | 458 | 505 | 48 | 4.8E-11 | ||
| ProSiteProfiles | 459 | 492 | 34 | 9.657 | ||
| TIGRFAM | 462 | 494 | 33 | 0.0013 | ||
| ProSiteProfiles | 493 | 528 | 36 | 8.144 | ||
| ProSiteProfiles | 529 | 559 | 31 | 8.353 | ||
| Pfam | 532 | 556 | 25 | 3.1E-5 | ||
| TIGRFAM | 533 | 556 | 24 | 2.3E-4 | ||
| ProSiteProfiles | 595 | 629 | 35 | 8.901 | ||
| Pfam | 598 | 626 | 29 | 0.074 | ||
| Pfam | 632 | 754 | 123 | 7.3E-28 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi2g1v0451400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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