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LotjaGi2g1v0453500.1

Overview

Field Value
Gene ID LotjaGi2g1v0453500
Transcript ID LotjaGi2g1v0453500.1
Lotus japonicus genome version Gifu v1.2
Description ATP-dependent RNA helicase; TAIR: AT4G14790.1 ATP-dependent RNA helicase; Swiss-Prot: sp|Q9SMX1|SUV3M_ARATH DExH-box ATP-dependent RNA helicase DExH16, mitochondrial; TrEMBL-Plants: tr|I1LFV4|I1LFV4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0453500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:94675469..94681464) extracted from Lotus japonicus Gifu genome v1.2.

CCAGAAGAGAAGCAAAATAATGTTATGTTGCGTGTTTGAAGAGGCGGAGAGTGAGGTTCGGTGATCGTGTGGCCAAACTC AACAACCGCCGCCACCGCAATCGCAATCGCGCTTTATTCTATTCTTTCCATTTCTCTTCCTCTTCTTCCCCTATTTGACT TCCTTCTATCACATTCACACTCTCTTCTCTTTCCAACAACAATCAATGTCTTCCTTTTTCCTCCGCCGCAGCACTGTCTT CTTCTCTCGCGCTCTAACCGGTTCGCTCCTCATTACTATCTTCCAAATTCCCTTTGAATTATCATGTAATTGACTTTGAA CCCAATCCCAATGTTGTTTATATTTCAGGTAATAGGGAGCGTTTTCATCTCTACTTTCAGTTCAAGGTACATCCATATAG CACCCGTACTGCTTCCATCAGAAACGATTTTACTGACTTGACGTAAGTATACAATAATACATGTCTGGAAACTGCTGTCT GTCTTCTATTATTCCAAATTTTGTTGTAAATGCTTGCTCATGGTTAATTCCTGCCTGTTTTAGTTCCCCTCATACATGGT ATCCACAAGCCAGGAGTAAACGTCGCAGGGTTATCCTGCATGTTGGTCCCACAAATAGTGGTAAAACATATCATGCTTTG AAGCAACTTGAATCAAGTGCTTCTGGTAAATAACTTCTCTATTCTTTAAATAGGTAAAGCTTATCAGTAATGTGTATATA TGGGATGATTAAAACTTAGTAAGGAGAATAAGTATTTCTTTTTTTTTACTTTCTAGGCATATATTGTGGTCCTTTGAGAT TGTTGGCATGGGAGATAGCAAAACGGTTGAACAAGGCAAATGTTCCTTGTGATCTGATTACTGGCCAGGAGAGAGAGGAA GTTGACGGTGCAAATCATAGGGCTGCTACAGTTGAAATGGCTGATGTATCCTCTGATTACCAATGCGCTGTTATTGATGA AATTCAGGCAAGTCAATTTTTTACTGAGATTCCTTTCTAGAGCGCTCTCGTAGTAATATATTTTGGTTTATATGAGCCAA GATAAACAATCTTCACTTTCGGGTAAGGTCATGTTTTAACTTCTTATAACAATCCTTCATGTCAAGGATTCAATTTTAGT GGTATTACTAATTGAGAAGTAAAATTATTATTTTTCATGATTGAAGCATCTGCATTTGACATGACATTGATAGCTTCGCT AGTCATTATTCCATATCTTCTTGTTGATAGGCTTTCCTTGGTCTGCTTGTTATGTTGACTTCTATTCCACTCTAATTTAT ATTTCTTTCTGCATTTAGATGTTGGGGTGTAGTACAAGGGGCTATTCATTTACACGTGCTTTATTAGGCATTGCTGCAGA TGAACTTCACCTTTGCGGTGATCCAGCTGCAGTTCCCCTTGTTCAGGAGATGTTGAAAATTACTGGTGACGAAGTTGAGG TACTGAAACTTGTGTTTTTTCATTTCACCTTCAAACATTCACTAAGAACTTTCTTCCTTTTTTTTCTGGACGGGTTAGGT TAATGGGGCAGAAAGATTACACAACTTATTTCTTATAGTAATTTCATTCTCATTGAGGCCCTGTGCTTAGTCATGGTTTT TTATTATAATGTAGTTGTACTCTCTTCGACTAAATTTTCTTCTTCATGTGCGCTTCAGGTTAAGTTTTATGAGAGATTGT CACCTTTAGTCCCACTGAAGGTTCCTCTTGGATCCTTCTCTAATGTAAGAAATGGTGATTGCATTGTAACCTTTTCACGT AAAGACATATACGGATTGAAGGTAGGCTTTTACATTTTTCAGATGATTTGAAATTGTGTTTCTATACTATGGCCTAACTT GTAAAAGTCGACCTCATATTTTTCAGAAGAAAATTGAAAGAGAAGGAAGGCATCTTTGTTCAGTAGTTTATGGTTCACTG CCACCAGAGACTCGTACAAGGCAGGTGTGAGGTCCTACCTCTCTAAGAAGTTTTTGGCTTCATTTTTGAATTAAACTTGT TACAGGGGAATGTGTTCTTTAAAATTTTAATGCTTACAGCCCAGATAAAAAATTTCGCTGTGTTTTTTTCTCTTGTGACT TTTGTATTTCTCATTCTAGCAAAAACTGTCATACTGACTTAGAATTTGGGTTAGGCCTAACTCTACGCCAAAAGCTAGCT CAGGGGTAAGGGTTGCTCTACATTTTATAAACACTTATTTGGTCATATCTCTAGTCAATGTGAGATTTTTTAACACACCC CTTACGCCCAAGGCTAGACATTTTAAGCATAGAATTTGCATATATGAACATCTGTGGGTGACCCATATATGAGAGGTCTC CAGTAAACGGAACTAGGATGGACTCTGATACAATAAAAAATAAAGAGAGCGATAGTGCAGAGAAAAAGATTTCTGAATAT TAATTGTTTCAAATGAATGATTGTTACACAGAAAATAGCTCTTCTATAGAAGAACAGAGAAAACAAAGCTTGCAGGAGAA GCTAGATTAATTTACTAACTACTGAATCAAACAGAAAAAGACAGCTGGCACAAAACTAACTAATTACTATAGAAAATGTT ACTGATAATCAGTAAATACACAATTCTTCAATACTGACCATGACCAGTTTATCTGATTTCAGATAAAATTCATGTGTCTG TTTGGAAATTCCTTCTCTTCTTTCACTTGTAGTTTTTAAGTTATTAGTATATTTGATCAGTATTTTTACTTTTCCTTTGT ATTGTCCCTCTATGCCAAGGATTTACTGAGCTAATAGTTTCACTAGGACTGCAGGCAACCATGTTCAATGATGCAAGTAG CGAGTTTGATGTTCTTGTGGCCAGTGATGCCATTGGAATGGGTCTTAATCTAAACATCTCTAGGATCATTTTCTCAACCA TGAAGAAGTTTGATGGTTTTGAGATGCGGGACCTGACTGTACCTGAGATCAAACAGATAGCAGGTAGCATGAAATTCGTA AAAGCAGATTGACCTTGTTCCAGAATTTGCTCAAGGGACTGTATCGGATATATAACAACACTGATAATTTGTTATTTTGA ACTTTTCATTTGTCAATAACTGATGTTGAAGTCAACATACACGTTTTTTTTTTTGGTTTGGAAATTCCGCATATTTTTCA ATTGCATAACTTTTCTGCACTTAACTTTTACCATGAGGCATGCCAGCTCTTCTTGTGTATTAAATTTGAAGCAACTTATT TAGCTCAGTTAGGCCAACGTTGAAGAATCCTTATAAATATGCCAATGTTCTATGTGGGACCGTCAAATATGTGTGTCTTA GAAAAACCCGTGCTACATCATAAAAAAGAATTTTAACTTCTTGTTCAAGTTTATTTTTGTTCCCAACCTCTGTAGGCTTT AGCATGCCCCTTCTTCATCTCTCATTCCTTCTACCAGCAAGACTATTAATGTTGATGTTTTTTGTATTGTTTTCTAGATT TTCATCAATCCAATTTTAATGTTGTCTAATGAATTTGGCATCTGCTTTAGGTTTTAAAAGCTCTATTAAATGTGGTCTTG GTTGTAATATGTCCTAAGTATTTGGATCATATCTGATTCTTGGTTGCCTTGAATGCATATATTCTTGCAGGGAGAGCTGG CAGATATGGATCAAATTTTCCTGTAGGAGAAGTAACCTGCATGGATGCTGACGATCTACCCTTGTTGCATTCATCATTGA ACTCCCCATCACCCATTTTAGAGGTAACCTATTGCCTAATTTCCCTGTTCTAATAAGGATGCACCTTCATCTGAACTTGA TTTACTTTATCTCAAATCTTTCATTGATGATTTGTGTATAATATCCATTCTAATACAGCGTGCTGGGTTGCTTCCTACCT ATGAACTGATGTATATGTATTCAAGATTGCACCCAAAGTATGGTTTCTGTCAAGTACTGGTAAGTTACATTTGTAGTCTA TATATTGTATCTGGGGTTCCGGCTCCTCTAAAGTAAAAGAGTCACTTTAGAAGGTTAGGTAGGTCTTCACAACTATTGGT TGAATTGTTTTATTGACTTTTCAAAGTAGGTAATCATTATTAATGGTTGTGATGACTTACTTTACCCTCTAAAGTGACTC TCTCAGTTTAGAGGAGTCACAAATCCATGGACAAGCGTCTATGTCCTCTTCCCGTCATGTGTCAAATTATGAAAGCTGAA CATCCCTATATGTCTTAACATTGAAAACTACATAATTACTAATCTATCTTTCATATTGCAGGAGCATTTTATTGACAATG CCAAATTATCCGAAAATTATTTCATTGTTAATTGTGAACAAGTATTGGTATGTCTATTAATAGCTGTCTTGTTATTAAAT CATGGACATTTCATATCAGTTATCAAACACCTCCATTATTTGATTATTATTTACTGGCTTCCATTTAATTATTTTGTGGG GTGTTATTTCTACACGCTGGCACCACCAGAAAGTGGCTGCTGTTATTGATGGGTTTCCACTCGGGCTGCATGAGAAGTAC CTTTTCTGTATCAGGTACATTCTTACCTTTTCAGAAAATAATATTTTTAGAATGTAATGCCCAAGTCTCAAGGACAATTC TATTAATAGAAACCCTAGCAAAATGATCAAATTAGGGTGTATGTATTTTATATCACTTAACCTTATCAGGTGCTTTTTAA CTGATACCTGTAATATTCAGTCCAGCTGACATGGATGATGATATTTCATCTCAAGGCCTGGTACAGGTAACTAACATATA GTTAGTATGAAATATTTTGATGCTAGTTTGAATGGTTATAGAAGTGATGTATCATATGATGAACCAGTTTGCAGAGAATT ATGCAAAGAAAGGCCTTGTCCGGCTGCGGGAAATATTTACGCCAGGGACACTGACAGTGCCCAAGACACCAGCTGCTCTT AAGGAGCTGGAGTCCATCCACAAGGTTTCTTTTGTTACTTCAATTTTTTGAGTTCACTTGAATGGTTGTCATGGGCCAAT CAATATACAGTTTCATGATTTCAATTCCAATCGTCATTTTGACCAGCATTTTGGAAATTCCTCTAAAGCCAAAATCAAAT TTGGAAAGAAACTCTTGTGAGTTAACTTCTGGGTACCAGAATTGGTTTTGAAGAAAAATAAGCTAATCATCCAATCATGT ACCATGAGCCTTGTACAAAATTGGCAATATTTTCCCTCTTGGTTTGATGGAAAATGTTGATTAACCCATTTTCTAAACTG ATTTTGAACTAAAGAGCTTCTGAATTTATTGAGATTTTTAATTGGTGCCAAAACTGCAGGTCTTGGACCTCTACGTCTGG TTGAGTTTCCGGTTGGACGAATCTTTCCCAGACCGGGAGCTGGCTTCATCTCAAAAGTCCATTTGCAGCATGTGAGTGTT GCTCAGTTTCTATGTGATTAACTGCTCTCTTTTTTCGTTTCCATTTTATGCATGTACTATATAGTTATCCATTTCAATTT CTAGGTTGATAGAGGAATTCCTAGAAAGATTCGGGTGGCAGAAGCCAACGGATAGAAGGTTGCCTTCGCGGGTGTCAAAT TCTCTATTATCCCCCCACATGAGGCAATATTTATAGAGGATATTCCCTTTCCATGCCAGCACCGTGACCCCTGCCAACAC TTAGACCCGTTTGGATTCATACCAAAGAGCATTAATTGAATCTTATTTACTGCGATTTTTGTAGTGGTGAAACTTGAATA AGTGTTCATTGGTCCATAGCCAAACAGGCTCTTATATGCTCAACAATCGGCATTGTACAAGTTGGCACGAAACAGTGTCA AGTCTTCTGTACATTTCTAGGTTCTTTTACACCTCCTGGGTGGTTTTATCATATAAGTTCATCAGGACTTGTGATTCTAC AATGTATGACAGAAGTAAATTATAATGGACTCGAGATTCTTTTTTCCTTGGAATACTTTTTTTCTATTCATTTTCAAATG ACTGTAAACGCCACTTGATATTAAGTGATGAGTGTTTTGGATAATTTACATAAGATTATAAATTCGAACTTATGAC
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0453500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCTTCCTTTTTCCTCCGCCGCAGCACTGTCTTCTTCTCTCGCGCTCTAACCGGTAATAGGGAGCGTTTTCATCTCTA CTTTCAGTTCAAGGTACATCCATATAGCACCCGTACTGCTTCCATCAGAAACGATTTTACTGACTTGACTTCCCCTCATA CATGGTATCCACAAGCCAGGAGTAAACGTCGCAGGGTTATCCTGCATGTTGGTCCCACAAATAGTGGTAAAACATATCAT GCTTTGAAGCAACTTGAATCAAGTGCTTCTGGCATATATTGTGGTCCTTTGAGATTGTTGGCATGGGAGATAGCAAAACG GTTGAACAAGGCAAATGTTCCTTGTGATCTGATTACTGGCCAGGAGAGAGAGGAAGTTGACGGTGCAAATCATAGGGCTG CTACAGTTGAAATGGCTGATGTATCCTCTGATTACCAATGCGCTGTTATTGATGAAATTCAGATGTTGGGGTGTAGTACA AGGGGCTATTCATTTACACGTGCTTTATTAGGCATTGCTGCAGATGAACTTCACCTTTGCGGTGATCCAGCTGCAGTTCC CCTTGTTCAGGAGATGTTGAAAATTACTGGTGACGAAGTTGAGGTTAAGTTTTATGAGAGATTGTCACCTTTAGTCCCAC TGAAGGTTCCTCTTGGATCCTTCTCTAATGTAAGAAATGGTGATTGCATTGTAACCTTTTCACGTAAAGACATATACGGA TTGAAGAAGAAAATTGAAAGAGAAGGAAGGCATCTTTGTTCAGTAGTTTATGGTTCACTGCCACCAGAGACTCGTACAAG GCAGGCAACCATGTTCAATGATGCAAGTAGCGAGTTTGATGTTCTTGTGGCCAGTGATGCCATTGGAATGGGTCTTAATC TAAACATCTCTAGGATCATTTTCTCAACCATGAAGAAGTTTGATGGTTTTGAGATGCGGGACCTGACTGTACCTGAGATC AAACAGATAGCAGGGAGAGCTGGCAGATATGGATCAAATTTTCCTGTAGGAGAAGTAACCTGCATGGATGCTGACGATCT ACCCTTGTTGCATTCATCATTGAACTCCCCATCACCCATTTTAGAGCGTGCTGGGTTGCTTCCTACCTATGAACTGATGT ATATGTATTCAAGATTGCACCCAAAGTATGGTTTCTGTCAAGTACTGGAGCATTTTATTGACAATGCCAAATTATCCGAA AATTATTTCATTGTTAATTGTGAACAAGTATTGAAAGTGGCTGCTGTTATTGATGGGTTTCCACTCGGGCTGCATGAGAA GTACCTTTTCTGTATCAGTCCAGCTGACATGGATGATGATATTTCATCTCAAGGCCTGGTACAGTTTGCAGAGAATTATG CAAAGAAAGGCCTTGTCCGGCTGCGGGAAATATTTACGCCAGGGACACTGACAGTGCCCAAGACACCAGCTGCTCTTAAG GAGCTGGAGTCCATCCACAAGGTCTTGGACCTCTACGTCTGGTTGAGTTTCCGGTTGGACGAATCTTTCCCAGACCGGGA GCTGGCTTCATCTCAAAAGTCCATTTGCAGCATGTTGATAGAGGAATTCCTAGAAAGATTCGGGTGGCAGAAGCCAACGG ATAGAAGGTTGCCTTCGCGGGTGTCAAATTCTCTATTATCCCCCCACATGAGGCAATATTTATAG
Download CDS Sequence

Protein sequence (LotjaGi2g1v0453500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSSFFLRRSTVFFSRALTGNRERFHLYFQFKVHPYSTRTASIRNDFTDLTSPHTWYPQARSKRRRVILHVGPTNSGKTYH ALKQLESSASGIYCGPLRLLAWEIAKRLNKANVPCDLITGQEREEVDGANHRAATVEMADVSSDYQCAVIDEIQMLGCST RGYSFTRALLGIAADELHLCGDPAAVPLVQEMLKITGDEVEVKFYERLSPLVPLKVPLGSFSNVRNGDCIVTFSRKDIYG LKKKIEREGRHLCSVVYGSLPPETRTRQATMFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGFEMRDLTVPEI KQIAGRAGRYGSNFPVGEVTCMDADDLPLLHSSLNSPSPILERAGLLPTYELMYMYSRLHPKYGFCQVLEHFIDNAKLSE NYFIVNCEQVLKVAAVIDGFPLGLHEKYLFCISPADMDDDISSQGLVQFAENYAKKGLVRLREIFTPGTLTVPKTPAALK ELESIHKVLDLYVWLSFRLDESFPDRELASSQKSICSMLIEEFLERFGWQKPTDRRLPSRVSNSLLSPHMRQYL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR12131:SF2
42 551 510 4.4E-287 –
PANTHER
PTHR12131
42 551 510 4.4E-287 –
Gene3D
G3DSA:1.20.272.40
46 431 386 7.8E-156 –
Gene3D
G3DSA:3.40.50.300
52 206 155 7.8E-156 –
ProSiteProfiles
PS51192
58 174 117 8.428
IPR014001
SUPERFAMILY
SSF52540
62 333 272 2.97E-25
IPR027417
CDD
cd17913
64 205 142 4.50856E-86 –
ProSiteProfiles
PS51194
200 380 181 10.016
IPR001650
Gene3D
G3DSA:3.40.50.300
207 358 152 7.8E-156 –
CDD
cd18805
209 343 135 1.34295E-78 –
Pfam
PF00271
224 331 108 2.4E-10
IPR001650
SMART
SM00490
243 331 89 6.0E-14
IPR001650
Pfam
PF18147
413 454 42 8.3E-10
IPR041082
Gene3D
G3DSA:1.20.58.1080
433 534 102 1.7E-20 –
Pfam
PF12513
479 526 48 1.1E-17
IPR022192

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0016817
Molecular function Hydrolase activity, acting on acid anhydrides Catalysis of the hydrolysis of any acid anhydride.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0453500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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