Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0453700 |
| Transcript ID | LotjaGi2g1v0453700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing family protein; TAIR: AT3G22690.2 LOW protein: PPR containing-like protein; Swiss-Prot: sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690; TrEMBL-Plants: tr|I1LFV1|I1LFV1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0453700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:94683437..94685970) extracted from Lotus japonicus Gifu genome v1.2.
TGCTCGAGCAACTTGTATTGCATCAGCCACCAATGGCAATGGCCACAACCCTTCATCCATCTTCTACTCTCTTAGTCCCC ACAGGCCAAAAAGAATCTAAACCCATAGCCACAAACCCATCACCCAAAACCCTGAAAGAGTTGAAGCAGTTACACTGTGA CATGATGAAGAAAGGCCTGTGTCACAAGGCTAGTACTGAACTTAACAAGCTTGTTGCTTCCTGTGTCAAGATAGGTATCC ATGAGAGCTTGGACTATGCTCAAAATGCTATCATGGATGCTGAAGGTAGCATGGGTAATTCATTGTTCATGTGCAACTCT CTCATTAGAGGTTATGCTTCAGCTGGGCTAGGTGACCAAGCAATCTTGTTTTACATTCACATGGTGGTAGTCATGGGCAT TGTCCCTGACAAGTTCACTTTCCCATTTTTGCTCAGTGCATGTTCTAAGATTATGGCACTTTCTGAGGGTGTTCAAGTTC ATGGGGTTGTTGTCAAGATGGGTTTGGAGGAAGATATCTTTATCAGGAACTCTTTGATACACTTTTATGCTGAGTGTGGG AAACTTGGGTTAGGACGAAAGGTGTTTGACGGAATGCCTGAGAGAAATGTTGTGTCTTGGACTAGTTTGATCAATGGTTA TGTTGGGAGGGACATGGCTAAGGAGGCTGTTTCTCTGTTCTTTGAGATGGTTGAAGCTGGTGTTGAACCCAATCCTGTGA CCATGGTTTGTGTTATATCTGCTTGTGCCAAGTTGAAGGATTTTGAATTGGGTAAAAAAGTGAGCTCTTTTATTAGTGAG TTGGGTGTGAAACTAAATACACTCATGGTGAATGCACTGGCTGATATGTACATGAAATGTGGAGATATATCCACTGCCAG ACGAGTTTTTGATGAATGTACTGATAAGAATCTGGTTATGTACAATACTGTCATGTCAAATTATGTGCACCATGGGCTGG CCAGTGAAGTGCTACTGATTTTGGATGAAATGCTGCAAACAGGACCAAGGCCGGATAAGGTAACGATGTTATCTACTATT GCAGCCTGTGCACAGTTAGGTGATCTTTCTGTTGGGAGGTCTTCCCATGCTTTTGTTTTGCGGAATGGACTTGAAGGTTG GGATAACATTTCCAACGCCATCATTGACATGTACATGAAATGTGGCAAAAGAGAAACTGCTTGTAAAGTTTTTGAGCACA TGTCAAACAAGACGGTGGTGACATGGAACTCCTTAATTGCAGGTTTGGTTAGAGACGGTGATCTGGAATTAGCTTGGAGA ATCTTTGATGAGATGCCAGAAAGGGATCTCGTCTCCTGGAACACCATGATTGGTGCCATGGTTCAAGCAAGCATGTTTGT GGAAGCAATTGAGCTATTCAGGGAGATGCAGAACCAGGGCATTGGAGGAGATAGAGTGACAATGGTGGGCATTGCTTCTG CTTGTGGATATTTAGGAGCTCTTGATCTTGCTAAGTGGATCTATACTTACATTGAGAAAAATGATATTCACATTGACATG CAGCTTGGCACAGCCTTGGTTGACATGTTTTCAAAGTGTGGCGATCCTCCAAGCTCTATGCATGTGTTCAAAAAAATGGA AAAACGCGATGTCTCTGCGTGGACTGCTGCCATCAGAATTATGGCAGTGGAGGGAAATGCAAAAGGGGCCATTGAGCTTT TCAATGAAATGCTCAAGCAAGGAGTGACACCAGACGATTTTGTTTTTGTGGCACTATTGACAGCATGTAGTCATGGTGGA TATGTGGACCAAGGGAGACAACTTTTTCAGTCAATGGAAAAGAACTACAGAATAAGCCCTCAAATCGTTCACTATGGATG CATGATTGATTTGCTTGGTCGAGCTGGGTTGCTGGAAGAGGCTCTTGATCTCATACAGAGCATGCCAATGGAACCTAATG ATGTTGTGTGGGGATCTTTTCTAGCAGCTTGTCGGAAACACAAGAATGTTGAATTGGCTCATTATGCAGCTGAGAAGTTA ACTCAATTGGCCCCTGAAAGAGTGGGGATTCAGGTGCTGTTATCTAATATCTATGCATCAGCTGGAAAATGGACTGATGT AGCAAGAGTAAGGTTGCAAATGAAGGAGAAAGGGGTTCAGAAAGTGCCTGGATCAAGCTCAATAGAGGTTCAAGGTCTGA TTCACGAGTTCACATCTGGTGACGAATCACATGCAGAGAACAAGCAAATTGAATTAATGCTACAAGAAATAAACTGCAGG CTGAGCCAGGCAGGGTTTGTTCCTGATACAACCAATGTCTTGGTCGACGTCGATGAGCGCGAGAAGGAGCATTTGCTCGC CAGGCATAGTGAGAAGCTAGCCATGGCTTATGGATTAATCACTACTGCTCAAGGCATACCTATACGGGTAGTGAAAAATC TTAGAATGTGTTCTGATTGTCACTCATTTGCGAAGCTAGTATCAAAACTATACCATAGGGAAATTACTATTAGAGATAAT AACAGGTATCATTTTTTCAAGGAAGGATCATGTTCTTGTAGAGATTTTTGGTGA
CDS sequence (LotjaGi2g1v0453700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAATGGCCACAACCCTTCATCCATCTTCTACTCTCTTAGTCCCCACAGGCCAAAAAGAATCTAAACCCATAGCCAC AAACCCATCACCCAAAACCCTGAAAGAGTTGAAGCAGTTACACTGTGACATGATGAAGAAAGGCCTGTGTCACAAGGCTA GTACTGAACTTAACAAGCTTGTTGCTTCCTGTGTCAAGATAGGTATCCATGAGAGCTTGGACTATGCTCAAAATGCTATC ATGGATGCTGAAGGTAGCATGGGTAATTCATTGTTCATGTGCAACTCTCTCATTAGAGGTTATGCTTCAGCTGGGCTAGG TGACCAAGCAATCTTGTTTTACATTCACATGGTGGTAGTCATGGGCATTGTCCCTGACAAGTTCACTTTCCCATTTTTGC TCAGTGCATGTTCTAAGATTATGGCACTTTCTGAGGGTGTTCAAGTTCATGGGGTTGTTGTCAAGATGGGTTTGGAGGAA GATATCTTTATCAGGAACTCTTTGATACACTTTTATGCTGAGTGTGGGAAACTTGGGTTAGGACGAAAGGTGTTTGACGG AATGCCTGAGAGAAATGTTGTGTCTTGGACTAGTTTGATCAATGGTTATGTTGGGAGGGACATGGCTAAGGAGGCTGTTT CTCTGTTCTTTGAGATGGTTGAAGCTGGTGTTGAACCCAATCCTGTGACCATGGTTTGTGTTATATCTGCTTGTGCCAAG TTGAAGGATTTTGAATTGGGTAAAAAAGTGAGCTCTTTTATTAGTGAGTTGGGTGTGAAACTAAATACACTCATGGTGAA TGCACTGGCTGATATGTACATGAAATGTGGAGATATATCCACTGCCAGACGAGTTTTTGATGAATGTACTGATAAGAATC TGGTTATGTACAATACTGTCATGTCAAATTATGTGCACCATGGGCTGGCCAGTGAAGTGCTACTGATTTTGGATGAAATG CTGCAAACAGGACCAAGGCCGGATAAGGTAACGATGTTATCTACTATTGCAGCCTGTGCACAGTTAGGTGATCTTTCTGT TGGGAGGTCTTCCCATGCTTTTGTTTTGCGGAATGGACTTGAAGGTTGGGATAACATTTCCAACGCCATCATTGACATGT ACATGAAATGTGGCAAAAGAGAAACTGCTTGTAAAGTTTTTGAGCACATGTCAAACAAGACGGTGGTGACATGGAACTCC TTAATTGCAGGTTTGGTTAGAGACGGTGATCTGGAATTAGCTTGGAGAATCTTTGATGAGATGCCAGAAAGGGATCTCGT CTCCTGGAACACCATGATTGGTGCCATGGTTCAAGCAAGCATGTTTGTGGAAGCAATTGAGCTATTCAGGGAGATGCAGA ACCAGGGCATTGGAGGAGATAGAGTGACAATGGTGGGCATTGCTTCTGCTTGTGGATATTTAGGAGCTCTTGATCTTGCT AAGTGGATCTATACTTACATTGAGAAAAATGATATTCACATTGACATGCAGCTTGGCACAGCCTTGGTTGACATGTTTTC AAAGTGTGGCGATCCTCCAAGCTCTATGCATGTGTTCAAAAAAATGGAAAAACGCGATGTCTCTGCGTGGACTGCTGCCA TCAGAATTATGGCAGTGGAGGGAAATGCAAAAGGGGCCATTGAGCTTTTCAATGAAATGCTCAAGCAAGGAGTGACACCA GACGATTTTGTTTTTGTGGCACTATTGACAGCATGTAGTCATGGTGGATATGTGGACCAAGGGAGACAACTTTTTCAGTC AATGGAAAAGAACTACAGAATAAGCCCTCAAATCGTTCACTATGGATGCATGATTGATTTGCTTGGTCGAGCTGGGTTGC TGGAAGAGGCTCTTGATCTCATACAGAGCATGCCAATGGAACCTAATGATGTTGTGTGGGGATCTTTTCTAGCAGCTTGT CGGAAACACAAGAATGTTGAATTGGCTCATTATGCAGCTGAGAAGTTAACTCAATTGGCCCCTGAAAGAGTGGGGATTCA GGTGCTGTTATCTAATATCTATGCATCAGCTGGAAAATGGACTGATGTAGCAAGAGTAAGGTTGCAAATGAAGGAGAAAG GGGTTCAGAAAGTGCCTGGATCAAGCTCAATAGAGGTTCAAGGTCTGATTCACGAGTTCACATCTGGTGACGAATCACAT GCAGAGAACAAGCAAATTGAATTAATGCTACAAGAAATAAACTGCAGGCTGAGCCAGGCAGGGTTTGTTCCTGATACAAC CAATGTCTTGGTCGACGTCGATGAGCGCGAGAAGGAGCATTTGCTCGCCAGGCATAGTGAGAAGCTAGCCATGGCTTATG GATTAATCACTACTGCTCAAGGCATACCTATACGGGTAGTGAAAAATCTTAGAATGTGTTCTGATTGTCACTCATTTGCG AAGCTAGTATCAAAACTATACCATAGGGAAATTACTATTAGAGATAATAACAGGTATCATTTTTTCAAGGAAGGATCATG TTCTTGTAGAGATTTTTGGTGA
Protein sequence (LotjaGi2g1v0453700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAMATTLHPSSTLLVPTGQKESKPIATNPSPKTLKELKQLHCDMMKKGLCHKASTELNKLVASCVKIGIHESLDYAQNAI MDAEGSMGNSLFMCNSLIRGYASAGLGDQAILFYIHMVVVMGIVPDKFTFPFLLSACSKIMALSEGVQVHGVVVKMGLEE DIFIRNSLIHFYAECGKLGLGRKVFDGMPERNVVSWTSLINGYVGRDMAKEAVSLFFEMVEAGVEPNPVTMVCVISACAK LKDFELGKKVSSFISELGVKLNTLMVNALADMYMKCGDISTARRVFDECTDKNLVMYNTVMSNYVHHGLASEVLLILDEM LQTGPRPDKVTMLSTIAACAQLGDLSVGRSSHAFVLRNGLEGWDNISNAIIDMYMKCGKRETACKVFEHMSNKTVVTWNS LIAGLVRDGDLELAWRIFDEMPERDLVSWNTMIGAMVQASMFVEAIELFREMQNQGIGGDRVTMVGIASACGYLGALDLA KWIYTYIEKNDIHIDMQLGTALVDMFSKCGDPPSSMHVFKKMEKRDVSAWTAAIRIMAVEGNAKGAIELFNEMLKQGVTP DDFVFVALLTACSHGGYVDQGRQLFQSMEKNYRISPQIVHYGCMIDLLGRAGLLEEALDLIQSMPMEPNDVVWGSFLAAC RKHKNVELAHYAAEKLTQLAPERVGIQVLLSNIYASAGKWTDVARVRLQMKEKGVQKVPGSSSIEVQGLIHEFTSGDESH AENKQIELMLQEINCRLSQAGFVPDTTNVLVDVDEREKEHLLARHSEKLAMAYGLITTAQGIPIRVVKNLRMCSDCHSFA KLVSKLYHREITIRDNNRYHFFKEGSCSCRDFW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 30 | 30 | - | – | |
| Gene3D | 26 | 140 | 115 | 4.9E-7 | ||
| PANTHER | 38 | 150 | 113 | 3.9E-130 | – | |
| ProSiteProfiles | 90 | 125 | 36 | 8.659 | ||
| TIGRFAM | 93 | 126 | 34 | 8.0E-4 | ||
| Pfam | 93 | 118 | 26 | 0.012 | ||
| ProSiteProfiles | 126 | 160 | 35 | 6.719 | ||
| Gene3D | 141 | 252 | 112 | 1.9E-23 | ||
| PANTHER | 144 | 249 | 106 | 3.9E-130 | – | |
| ProSiteProfiles | 161 | 191 | 31 | 7.761 | ||
| Pfam | 191 | 240 | 50 | 3.6E-12 | ||
| ProSiteProfiles | 192 | 226 | 35 | 11.816 | ||
| TIGRFAM | 194 | 227 | 34 | 2.5E-7 | ||
| ProSiteProfiles | 227 | 261 | 35 | 7.235 | ||
| Gene3D | 253 | 359 | 107 | 3.2E-19 | ||
| ProSiteProfiles | 262 | 292 | 31 | 7.235 | ||
| SUPERFAMILY | 263 | 421 | 159 | 7.4E-5 | ||
| PANTHER | 265 | 349 | 85 | 3.9E-130 | – | |
| Pfam | 266 | 293 | 28 | 0.33 | ||
| ProSiteProfiles | 293 | 327 | 35 | 10.38 | ||
| TIGRFAM | 295 | 328 | 34 | 1.1E-4 | ||
| Pfam | 295 | 322 | 28 | 5.8E-4 | ||
| ProSiteProfiles | 328 | 362 | 35 | 5.678 | ||
| PANTHER | 348 | 421 | 74 | 3.9E-130 | – | |
| Gene3D | 360 | 467 | 108 | 2.1E-28 | ||
| ProSiteProfiles | 363 | 393 | 31 | 6.489 | ||
| Pfam | 368 | 392 | 25 | 0.099 | ||
| Pfam | 393 | 425 | 33 | 7.0E-9 | ||
| ProSiteProfiles | 394 | 428 | 35 | 12.101 | ||
| TIGRFAM | 396 | 427 | 32 | 2.8E-8 | ||
| PANTHER | 426 | 484 | 59 | 3.9E-130 | – | |
| TIGRFAM | 427 | 457 | 31 | 6.0E-8 | ||
| Pfam | 427 | 457 | 31 | 1.9E-7 | ||
| ProSiteProfiles | 429 | 459 | 31 | 7.574 | ||
| ProSiteProfiles | 460 | 494 | 35 | 5.722 | ||
| Gene3D | 468 | 570 | 103 | 3.3E-19 | ||
| PANTHER | 481 | 699 | 219 | 3.9E-130 | – | |
| ProSiteProfiles | 495 | 525 | 31 | 7.355 | ||
| Pfam | 526 | 573 | 48 | 2.6E-8 | ||
| ProSiteProfiles | 526 | 560 | 35 | 10.698 | ||
| TIGRFAM | 529 | 561 | 33 | 7.7E-5 | ||
| ProSiteProfiles | 561 | 591 | 31 | 8.035 | ||
| Gene3D | 571 | 713 | 143 | 4.9E-20 | ||
| ProSiteProfiles | 597 | 627 | 31 | 7.837 | ||
| Pfam | 599 | 625 | 27 | 1.9E-4 | ||
| TIGRFAM | 600 | 624 | 25 | 6.6E-4 | ||
| ProSiteProfiles | 663 | 697 | 35 | 6.16 | ||
| Pfam | 699 | 823 | 125 | 2.8E-38 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi2g1v0453700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…