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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0454600 |
| Transcript ID | LotjaGi2g1v0454600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT4G14820.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820; TrEMBL-Plants: tr|G7K3N9|G7K3N9_MEDTR Organelle transcript processing protein, putative; Found in the gene: LotjaGi2g1v0454600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:94791077..94795771) extracted from Lotus japonicus Gifu genome v1.2.
TGGAGATGGCCATGGTCACCATGACCCACACCCCTCTTCCTCTTCCTCAGCTCAATCATCTGTTGACAGCGTCCACAACA TTAACACTCTCCCAACTCAAGCAAATCCACGCTCAAATCCTCCGCTCAAACCCTTCAAACTCTCTCCTCTCCAAACTCGT CATCTCCTCTTGCTCCCTCTCCTCCTCCTCTTCTGGACTCCACTACGCCCTCTCCGTTTTCTCCCAAATCCCAAACCCAG ACACCCATTTCTGCAACCAACTCCTCCGTCTTCTTTCTCGCAGCCCCACACCGCAAAACACCCTCTTCCTCTATCAGAAG CTCAGGAGAGTTGGCTCCCCTCTCGACCCCTTCAGCTTCCCCCCACTATTGAAGGCCGTGTCAAAAGCTTCTGCATTGTA TCTCGGCTTGGAGATTCATGGCCTTGCTTCCAAGCTTGGATTCCATTCAGACCCATTTATTCAGACGGGGTTGATTGCCA TGTACTCTGCTTGTCGCCGCATTATGGATGCACGGTTGGTGTTTGACAAAATGTCTCATCGGGATGCCGTTACCTGGAAC ATTATGATTGATGGGTATGTATGTTATAAGCATGTGATTATTTATTGCCTTTAATTACGAAAATGATGCTACTTTGCTGA GTAAGATTTTTACTTTTTGGCATTTTGAATCAGGTACTGCCAGAGTGGTAACTATGATCAAGTTTTGAAGCTGTATGAAG AAATGAAGACCTCTGATACGAAGCCAGATGGTGTTATCCTTTGTACCGTGCTTTCTGCATGTGGTCATTCCGGAAACTTA AGCTATGGCAAAGCAATTCATGAGTTCATTATGGATAATGGTCTTGCTCTTAGTGCTCATTTACAGTCTGCTCTTGTGAA CATGTATGTGAATTGTGGTGCAATGGATTTGGCTCGGGAGCTCTATGATAAACTCTCGTCAAAGCATTTGGTTGTTTCAA CTGCAATGCTTTCAGGTTATGCTAAACATGGAATGGTTAAAGATGCTCGCTTCATATTTGACCAGATTGTTGAAAAGGAC TTGGTGTGTTGGAGTGCAATGATATCTGGTTATGCTGAAAGTGACCAGCCTCAGGAGGCTCTTAAATTGTTCAATGAAAT GCAACTGCGGAACATAGTGCCAGATCAGATCACCATGTTGAGTGCAATTTCTGCTTGTGCTAATGTGGGCGCACTTGCTC AGGCGAGATGGATTCATACTTATGCAGATAAAAATGGGTTTGGAAGGTCTCTATCTGTCAACAATGCCCTGATTGATATG TACGCCAAATGTGGGAACTTGATCAGAGCAAAAGAGGTATTTGAGAATATGCCAAGAAAAAATGTGATATCTTGGTCCAG TATGATCAATGCTTTTGCCATGCATGGGTATGCCAATAGTGCCATGAACCTTTTCCATAGGATGAAAGAAGAAGATATTG AGCCTAATGGGGTTACATTTATTGGTGTCCTTTATGCGTGCAGCCATGCTGGTTTAGTTGAGGAGGGGCAGAAATTATTT TCATCCATGATTAATGAGCATGGCATCGCTCCTAGACATGAGCACTATGGTTGCATGGTTGACCTGTATTGTAGAGCCAA TCTCTTGAGAAAAGCTATGGAGCTCATTGAGTCAATGCCTTTTGCGCCAAATGTTATCATCTGGGGATCCCTTATGTCAG CTTGTCAAGTCCATGGCGAGGTTGAGTTAGGGGAATTTGCTGCCAAACAAATTCTTGAGTTAGAGCCTGATCATGATGGA GCCCTTGTGGTATTGTCAAACATTTATGCCAAAGAAAGAAGGTGGAATGATGTTGGACTCATCAGGCAATCAATGGCAAA TAAAGGTATCTCAAAGGAGAAGGCATCTAGTAGGGTTGAAATCAACAATGAGGTGCATGTCTTTATGATGGCCGATAGAT ATCATAAACAATCGCGTGAAATCTATAAGAAGTTAGAGGAGGTAGTCAGTGAATTGAAGTTGGTCAGCTACACACCAAGT ACCTCTGGCATTTTGATTGATTTAGAAGAGGAAGATAAAAAAGAACTAGTTCTCTGGCATAGCGAAAAGTTAGCACTCTG CTATGGGCTAATCAGTAAGCGGAGGAAAGAATCATGCATTCGCATTGTTAAAAATCTTAGAATATGTGAGGATTGTCATT CCTTTATGAAGTTGGTCTCAAAGGTGTATCAGATAGAGATTGTTGTGAGAGATAGGACTAGGTTTCACCATTTCAATAGT GGTACTTGTTCTTGTAGAGATTATTGGTGATTTATTTCTACTAGTAAATTGAAGTGCCTGTTACATCCTTATTTTTTGGC TTGCCCTCCAATAGAGATGTGCATATCAGAAAAGTTTTTAGTACTAGCAGTGTCACTCGTGTTTCATTATAATTTATAAT CATGATTTGGTAATAATTCAAACAAATGATGATTCTAATTAAGTACTTTAATGATCACAATCCTGAAGCCATCTTCAGCC GCAACGAATCTCATTAGTGTCTTCTCAACTTGATGTTACTTTGTATAATGGATCCTTGAAGATTGTGCATAACTGTATAT CATTATCAACCTCACGAAAACTATCATCACCCACATAACGTAGCAATATGAAATATGAAAGATTGCAAACTATCATTGTT GAAGGCAAGTTGAGATGAAGTCATTCTCCATTATAGTGCACTAATAAAAGTTCACAGTTGTTTGTGTTGAAAGTCGAGGG TAATGGCATAGACTAATAAATTAGTTAAATGCTCAGCTAAGTTTGTGGTTGAGAAGCCTTAGTAATACATTTGTACATTT TTTATATTTTTTTTAAATTATTGTTACTATTGAGTGAAATCTTATCTTATGTTGTCCCTGTTAATAAGATAATGATCCAA AGTCAGTGGTGGTAGCAACATAAGATACTTGAGAGTGTTGCTATCATTTGTTATTTGTGGATTACCTAACAATTGAAATC CGTCAAATGCCACTTAACTTGCAAAGCACGCTAGCTTCATCTAGATGTTTTGAAAAGAGAAATGGATGCAAAATCTTGTT TCCTGAGAATTATTTCGAGGGTAATGTTTTAGATGATGCCCTTTCGTTGAAGGAATGCAAAGATGGATAGCGCAGTAGAA AATAACCCAAAACGTCAAAAACACCTTTTGAATAAATGGAATAGTCATTTAATATGCTAAGTTGTGTGTGGTGTGTGTGG ACTACTTTTAGTTTTAGGAGGGCGATAGTTATTAAAGTTCAAGTTAGATCTAACTCTACTCTAAAATTAAAAGTATTTAT ATGCCCTGACTCTACTTGTAGGAAATATAAAACGACATTTGGAACGTGAAAATTCAACTAAAATTGGTGAGACAATTTGA AAATGGTATTTACTTGTTCCATAATCAATTAGCTTTCCCTTGAATCATTGAGTTCAGACATTATTCATAGTTGGAATGAT ACTGAGGATTGTAGTTATAACAATGTTGACTACAAAGTTCATATTAGTTTTTCCTCAAACAATAGTGAGTTAGGTTCAAT TAATTGATCTAAGATAAACTCTTGTATCATCTTAAAATTCATATCAAACCTAACTCTTTCCAAATGCTAATTTAGGTTCT ATCAAAAATAATTTTAGTCATATCTCTAGAGACCATAGTAATTTTTTTTATGCATAGGCATGAAGTTATGATTTACTTTG TTTTCATGAAAACTAGTTCTCAGTTGCCATGCTAAGGAAGGAAAACAAGCTAGGGAGAAAGCAAAGAAAAATGAGAAGAA AGAAAGTTCCTGTACAAAGACAAAGAGAATCAAGCATTGCCACATCAAACTAACCATGAAATTTATCCCATCCGACCATA CCAAAACAGAGTGATGGAGTGCCCTGTTCCCACCTTTCAACCTCCTCTGTTTTCTTTGCTTCCAACCTTCTTTGTTTTCC TCTATCTCACCATTACAATTGAAAAGTGGTTGAATCATCACCCACTTGAGAAGTGGTAGTTGACCTCGTACCGTGTTTCT CTGATGAAGTTGACCTTCTTCTCAGCATCTGCCTCATGCCATCAGCGACCTTAACCGCAGGATTCGATTTAATCTTACCA CAGAACGACATGTGAGCTTTCACAGCTTCTTCCATGGCGTATGGCATTTTCCCTCTGCTAACTTCATCCCTCACCGCTTC TGAACACAACCCACATAACCATTTGCCATCAAATTTGGACTTCACGTCGTTGATATAATCATGGGTGCAATCCTCTTTCA AGCCACAGCACTCACACTTGGCTGATTCAATTTCCATACTCTGTCTTTTGACTCTGTTTCTTATCACCCTTAGACAGTTT TATAGAAGGACGATGAGAATATTTATAGAACCCCACGTGTGGTCTCTGTTGGTTGGATTCGACCGCAACGATGAGTGATG ACAGAACAGGTTTTATTAATTTACTTTATTGTGGCAAGTTTTCTCACTTGGGATTGATGGTGTTGTTGCTTCAAGAACTA GTAAGTGTGTGTTTTGTTCAACGGGAGTTTTTATGGTGTTTGGGATGGGAGAGAGAATGCAATCATGCAAGTTTATGTAG GGAACATGCCATAATTTCCTCCATGTTCTAAGGGATATGGTATGAGAGCTGTGGAAAATATGACTAGTGTGGTCGGAGGG GCCTTCCCTTAACCTTGTTGACATTTAATTCTTGAAAATGATTTTGTATATCCGC
CDS sequence (LotjaGi2g1v0454600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCATGGTCACCATGACCCACACCCCTCTTCCTCTTCCTCAGCTCAATCATCTGTTGACAGCGTCCACAACATTAAC ACTCTCCCAACTCAAGCAAATCCACGCTCAAATCCTCCGCTCAAACCCTTCAAACTCTCTCCTCTCCAAACTCGTCATCT CCTCTTGCTCCCTCTCCTCCTCCTCTTCTGGACTCCACTACGCCCTCTCCGTTTTCTCCCAAATCCCAAACCCAGACACC CATTTCTGCAACCAACTCCTCCGTCTTCTTTCTCGCAGCCCCACACCGCAAAACACCCTCTTCCTCTATCAGAAGCTCAG GAGAGTTGGCTCCCCTCTCGACCCCTTCAGCTTCCCCCCACTATTGAAGGCCGTGTCAAAAGCTTCTGCATTGTATCTCG GCTTGGAGATTCATGGCCTTGCTTCCAAGCTTGGATTCCATTCAGACCCATTTATTCAGACGGGGTTGATTGCCATGTAC TCTGCTTGTCGCCGCATTATGGATGCACGGTTGGTGTTTGACAAAATGTCTCATCGGGATGCCGTTACCTGGAACATTAT GATTGATGGGTACTGCCAGAGTGGTAACTATGATCAAGTTTTGAAGCTGTATGAAGAAATGAAGACCTCTGATACGAAGC CAGATGGTGTTATCCTTTGTACCGTGCTTTCTGCATGTGGTCATTCCGGAAACTTAAGCTATGGCAAAGCAATTCATGAG TTCATTATGGATAATGGTCTTGCTCTTAGTGCTCATTTACAGTCTGCTCTTGTGAACATGTATGTGAATTGTGGTGCAAT GGATTTGGCTCGGGAGCTCTATGATAAACTCTCGTCAAAGCATTTGGTTGTTTCAACTGCAATGCTTTCAGGTTATGCTA AACATGGAATGGTTAAAGATGCTCGCTTCATATTTGACCAGATTGTTGAAAAGGACTTGGTGTGTTGGAGTGCAATGATA TCTGGTTATGCTGAAAGTGACCAGCCTCAGGAGGCTCTTAAATTGTTCAATGAAATGCAACTGCGGAACATAGTGCCAGA TCAGATCACCATGTTGAGTGCAATTTCTGCTTGTGCTAATGTGGGCGCACTTGCTCAGGCGAGATGGATTCATACTTATG CAGATAAAAATGGGTTTGGAAGGTCTCTATCTGTCAACAATGCCCTGATTGATATGTACGCCAAATGTGGGAACTTGATC AGAGCAAAAGAGGTATTTGAGAATATGCCAAGAAAAAATGTGATATCTTGGTCCAGTATGATCAATGCTTTTGCCATGCA TGGGTATGCCAATAGTGCCATGAACCTTTTCCATAGGATGAAAGAAGAAGATATTGAGCCTAATGGGGTTACATTTATTG GTGTCCTTTATGCGTGCAGCCATGCTGGTTTAGTTGAGGAGGGGCAGAAATTATTTTCATCCATGATTAATGAGCATGGC ATCGCTCCTAGACATGAGCACTATGGTTGCATGGTTGACCTGTATTGTAGAGCCAATCTCTTGAGAAAAGCTATGGAGCT CATTGAGTCAATGCCTTTTGCGCCAAATGTTATCATCTGGGGATCCCTTATGTCAGCTTGTCAAGTCCATGGCGAGGTTG AGTTAGGGGAATTTGCTGCCAAACAAATTCTTGAGTTAGAGCCTGATCATGATGGAGCCCTTGTGGTATTGTCAAACATT TATGCCAAAGAAAGAAGGTGGAATGATGTTGGACTCATCAGGCAATCAATGGCAAATAAAGGTATCTCAAAGGAGAAGGC ATCTAGTAGGGTTGAAATCAACAATGAGGTGCATGTCTTTATGATGGCCGATAGATATCATAAACAATCGCGTGAAATCT ATAAGAAGTTAGAGGAGGTAGTCAGTGAATTGAAGTTGGTCAGCTACACACCAAGTACCTCTGGCATTTTGATTGATTTA GAAGAGGAAGATAAAAAAGAACTAGTTCTCTGGCATAGCGAAAAGTTAGCACTCTGCTATGGGCTAATCAGTAAGCGGAG GAAAGAATCATGCATTCGCATTGTTAAAAATCTTAGAATATGTGAGGATTGTCATTCCTTTATGAAGTTGGTCTCAAAGG TGTATCAGATAGAGATTGTTGTGAGAGATAGGACTAGGTTTCACCATTTCAATAGTGGTACTTGTTCTTGTAGAGATTAT TGGTGA
Protein sequence (LotjaGi2g1v0454600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAMVTMTHTPLPLPQLNHLLTASTTLTLSQLKQIHAQILRSNPSNSLLSKLVISSCSLSSSSSGLHYALSVFSQIPNPDT HFCNQLLRLLSRSPTPQNTLFLYQKLRRVGSPLDPFSFPPLLKAVSKASALYLGLEIHGLASKLGFHSDPFIQTGLIAMY SACRRIMDARLVFDKMSHRDAVTWNIMIDGYCQSGNYDQVLKLYEEMKTSDTKPDGVILCTVLSACGHSGNLSYGKAIHE FIMDNGLALSAHLQSALVNMYVNCGAMDLARELYDKLSSKHLVVSTAMLSGYAKHGMVKDARFIFDQIVEKDLVCWSAMI SGYAESDQPQEALKLFNEMQLRNIVPDQITMLSAISACANVGALAQARWIHTYADKNGFGRSLSVNNALIDMYAKCGNLI RAKEVFENMPRKNVISWSSMINAFAMHGYANSAMNLFHRMKEEDIEPNGVTFIGVLYACSHAGLVEEGQKLFSSMINEHG IAPRHEHYGCMVDLYCRANLLRKAMELIESMPFAPNVIIWGSLMSACQVHGEVELGEFAAKQILELEPDHDGALVVLSNI YAKERRWNDVGLIRQSMANKGISKEKASSRVEINNEVHVFMMADRYHKQSREIYKKLEEVVSELKLVSYTPSTSGILIDL EEEDKKELVLWHSEKLALCYGLISKRRKESCIRIVKNLRICEDCHSFMKLVSKVYQIEIVVRDRTRFHHFNSGTCSCRDY W
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 36 | 36 | - | – | |
| Phobius | 1 | 18 | 18 | - | – | |
| Phobius | 19 | 31 | 13 | - | – | |
| Phobius | 32 | 36 | 5 | - | – | |
| Phobius | 37 | 721 | 685 | - | – | |
| PANTHER | 56 | 239 | 184 | 2.7E-114 | – | |
| ProSiteProfiles | 79 | 113 | 35 | 6.248 | ||
| ProSiteProfiles | 114 | 148 | 35 | 5.305 | ||
| Gene3D | 121 | 236 | 116 | 1.7E-22 | ||
| ProSiteProfiles | 149 | 179 | 31 | 6.511 | ||
| Pfam | 180 | 226 | 47 | 1.8E-11 | ||
| ProSiteProfiles | 180 | 214 | 35 | 14.184 | ||
| TIGRFAM | 182 | 215 | 34 | 7.5E-11 | ||
| SUPERFAMILY | 184 | 339 | 156 | 6.02E-5 | – | |
| ProSiteProfiles | 215 | 249 | 35 | 6.774 | ||
| PANTHER | 235 | 308 | 74 | 2.7E-114 | – | |
| Gene3D | 237 | 371 | 135 | 9.2E-28 | ||
| ProSiteProfiles | 250 | 280 | 31 | 6.774 | ||
| ProSiteProfiles | 281 | 311 | 31 | 7.903 | ||
| TIGRFAM | 286 | 315 | 30 | 2.7E-4 | ||
| PANTHER | 299 | 367 | 69 | 2.7E-114 | – | |
| Pfam | 311 | 359 | 49 | 2.6E-11 | ||
| ProSiteProfiles | 312 | 346 | 35 | 12.299 | ||
| TIGRFAM | 314 | 347 | 34 | 7.6E-9 | ||
| ProSiteProfiles | 347 | 381 | 35 | 6.095 | ||
| PANTHER | 365 | 577 | 213 | 2.7E-114 | – | |
| ProSiteProfiles | 382 | 412 | 31 | 8.528 | ||
| Gene3D | 385 | 615 | 231 | 6.0E-43 | ||
| TIGRFAM | 387 | 413 | 27 | 0.003 | ||
| Pfam | 412 | 459 | 48 | 1.1E-9 | ||
| ProSiteProfiles | 413 | 447 | 35 | 11.707 | ||
| TIGRFAM | 415 | 448 | 34 | 8.7E-7 | ||
| ProSiteProfiles | 448 | 483 | 36 | 8.616 | ||
| ProSiteProfiles | 484 | 514 | 31 | 7.103 | ||
| Pfam | 487 | 511 | 25 | 0.0013 | ||
| ProSiteProfiles | 516 | 546 | 31 | 5.272 | ||
| ProSiteProfiles | 550 | 584 | 35 | 5.185 | ||
| Pfam | 588 | 710 | 123 | 8.6E-34 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi2g1v0454600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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