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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0455600 |
| Transcript ID | LotjaGi2g1v0455600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT2G25580.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q680H3|PP170_ARATH Pentatricopeptide repeat-containing protein At2g25580; TrEMBL-Plants: tr|V7CR32|V7CR32_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0455600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:94864409..94867868) extracted from Lotus japonicus Gifu genome v1.2.
TGCTCTTCAAAGTCGCTTCTCTTCTCCCTTTCGCCACTCTTGGTACAGTTGGGTTTTTCCTTCATTTTTCATGCTGTTTT TCTTATCTTTTGTTTCATTGAACATCGTATGCCATTTATTCTTCTCATGAATCGTCACCTCTTTTGATTCTGTTGTTGGG GTGCAAGAGCTAAGTAAAAATCTAACCTCTGTGTTTGAACATTTGAAACCCTTATTGGGGTTTTATCACTTTCGCAAGAG CGACCCCTTGGTTTGTTCGGTTGGGGTTTTTCTGTTGCGTGATTTTCCTGATGATGTGACTGAATGTGTATTCTAGGATT TCATTGTAATTCATAGGATAGCATTGATTATTCAATCTGCTTGGAATTCTATATGTGAGTAGATTACTGTTAGTCTTGAG TGATTGCTTGGTTTTCTCCCTCATAATATACCACTGATTTTTTTTTATTTATTCCAATTTGTCCCTTTTTGCAGATTATG CTAAGTCCCAAATAATGTCTTCCAGGAGTGCCTCACTAGTTACAATTAATTCTCTTTTGAGGCAGTTCTCAAAATGTGAG ATTGCGGATTCTGTCAAAGGCCTTAACACATTTTGCACTGCTTCTGCTCAAAGGTGTGATTTTCACTATTCTGGTGGGGA TCAACAAAATAGTGCTGGGTCTCATCACCAAAGTGCAGGTCAGTCTTATAGGAATAGTCATGCTTACCAAAATGTAGCTC AAAGTAATTTGGCTGCGCATAATGGAAGTGTCAATGGGTACTACGGTCAAAGCAACGCGAAAGTGCCACAGGATGTTGGG GTAGTGGATAATTCTAGGGGATTTGGGATGCATCCAAATGCTTTTGTCGAGAAACATAATGATACACGAGAACCTGGGCA AAGGGTGCAACATCCCAATGCATTTAGTTCACCTAGGCCTTTAGAGTACCAGGGAAATATTCAAGGGGACCTCACTCAGA ACACGAGTCCTTCGTGGCAATCACGGAAGCACTCGGGTTATGGACAATTTCAGCAGAGTCTAATAGATGGTCGGTATCCT CCAAACTTGGATGGTGTGCAGAGATCAATTGCTGGCTCTCATCTATCAAGTAATGCAAAGCCTGATGGCGAATCAGTTGA GGCATCTACTGATAATCCATATAGAGGTACACTTGAGGAGCTAGATGGTTTCTGCATGGAGGGAAAACTGAAGGAAGCAG TTGAAGTTTTGGAATTGTTGGTTAAGCTTCAAATTCATGTGGATTTGCCTCGATATTTGCGATTGATGCATCAGTGTGCA GAAGCTAAATCTCTTGAAGAGGCAAGGACTGTACACAGTCATGCTTTGTCACATCTGTCACCTCTAGAAGTTAGCACCTA CAATAAAATACTGGAAATGTATTTTAAATGCGGTTCTGTAGATGACGCAATCAAGGTGTTCGATAATATGCCAGAGCGCA ATTTGACTACTTGGGATACTATGATAACGCAACTTGCTAAGAATGGGTTTGCAGAAGACTCAATTGATCTATTCACTCAA TTTAAAAAATTGGGACAACCTGATGGTCAGATGTTCATTGCGGTTTTTGCTGTATGCAGTATGCTGGGAGATCTTGATGA GGGAATGCTGCACTTTGAATCCATGAGCAAGGATTATGGAATTGTACCATCTATGGCTCATTTTGTCAGTGTAGTAGACA TGATTGGTAGTATTGGGCATCTTGATGAAGCCTTTGAATTCATTGAAAAGATGCCAATTGAACCAAGTGTTGATGTATGG AAGACTTTGATGAATTTTTGTAGAGTTCATGGAAACACTGAGCTCGGCGATCGTTGTGCTGAACTAGTTGAGCAGCTGGA TCCCACTCTCTTGAATGAGGAGTCAAAGGTTGGCCTTTTACCGGTAGAACCTTCAGACTCGATAAAAGAGAGAGAAAAGA AATTAGCAAGTAAAAATCTGCTAGAAGTTAGGAGCCGAGTCCATGAATATCGAGCAGGAGATACTTCTCATCCTGAAAAT GACAAGATTTATGCTCTTCTTAGAGGTCTGAGGACACAAATGAAAGAAGCTGGCTATATTCCAGAGGTAAAGTTTGTGCT GCATGACATTGACCAGGAAAGCAAAGAAGATGCTCTTCTTGCTCACAGTGAGAGACTTGCTGTTGCTTATGGTCTGATTA GCAGTTCTGCTCGCTCTCCTATTAGGGTGATTAAGAATCTCCGTGTTTGCGGTGATTGCCATACTGCACTGAAGATTATT TCTAAGATTGTGGGAAGAGAGTTCATCATTCGAGATGCTAAAAGGTTCCACCACTTTAAAGATGGGCTATGCTCCTGCCG GGATTATTGGTGAATGTTACCAAAGGTACTGGTATTCCCCTTTTTTTATACATTTCATCTTCAGTAATATTAAATCTGTC CAGCAACTACTACGTCTCTATCGTATGTGCTTCTATTTTTTCTCTTCCACAGCCAGGGAGCTTCACAAACACGCCTCTAT TCTTTCTTTTATTTCTATTTCCCCAATTTCTCTCAGACTACACTGTATATTATCTAAGCTTTCATTCTATCTCATCCTTA TTTCTCAAAGATCTTTCTTGCTCTCTCTTCCTGCGTTTCTTCTTTAATTTCATTTTATTCAAACTGCATCTTTTTCTTGC TCTCTCACAAAAAAAACTATTATTTCTTGCTCTTTTACTTTCAGTTTTTCTTTTTCTTTCGTCTCTACTTTGCTATTTCA AAAATATTTCATATTACGATCGGCAGCTTTCATGCGGTTCCTGGGTTTTGATTTTCTTACATCATTTTTCTCCAAATGTT ATTTTTTCAATTTTAAATATTTGTCTTAATGGTTATGGTTACTGTTTGACAGGAAGCTTCAAATGATAGTTTCAATAGAT TCTCTTAATTCTTTTGAGACAGAGTTTGCTTTTTGGGATCATCATAATGCAGGTAACTCTTTCTATCTTCTCCTTTGTTC CAGTATCGGGAAAAATGTTTCATTGGGTTTTCAAACTTATTTTGCTGTTTTCACTTGACTTGCAGCTTTGTTATGACAAG TTCACTAGAACGTACTGGCAATTTTGGTGTGAGGAGCTTTTCCTACGCCCCTGGATGTGTTAGTCTAAATAATCACAATT GTTGAGAATCATGACTATTAGGAATATTTAAAATATATTTGACATGCCTAAAAAATATTATTTCCGCCTTCCATAAAATT TTTGTACTGCCTTTTTTTTACTAGTGACTGTTAATTTTATTTAATATGTTAAATTTTTGCCCCCTCTGATTCTGTCCCTG CCTGAAGTGTTGGTTTCTGTTGAATGCTTCTTCTCTCTCCATTGCATGAAACCAATGAACTATGTTTAAAATACATGTAC GTATACATCTGGGGTTTAGTCTTAATTTCTTATTGATGGATACCCTTGTGAGTTTATTGGACCATGGTTCATGGTGATAG CAGACCTCTTGGCTGTGTTT
CDS sequence (LotjaGi2g1v0455600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTTCCAGGAGTGCCTCACTAGTTACAATTAATTCTCTTTTGAGGCAGTTCTCAAAATGTGAGATTGCGGATTCTGT CAAAGGCCTTAACACATTTTGCACTGCTTCTGCTCAAAGGTGTGATTTTCACTATTCTGGTGGGGATCAACAAAATAGTG CTGGGTCTCATCACCAAAGTGCAGGTCAGTCTTATAGGAATAGTCATGCTTACCAAAATGTAGCTCAAAGTAATTTGGCT GCGCATAATGGAAGTGTCAATGGGTACTACGGTCAAAGCAACGCGAAAGTGCCACAGGATGTTGGGGTAGTGGATAATTC TAGGGGATTTGGGATGCATCCAAATGCTTTTGTCGAGAAACATAATGATACACGAGAACCTGGGCAAAGGGTGCAACATC CCAATGCATTTAGTTCACCTAGGCCTTTAGAGTACCAGGGAAATATTCAAGGGGACCTCACTCAGAACACGAGTCCTTCG TGGCAATCACGGAAGCACTCGGGTTATGGACAATTTCAGCAGAGTCTAATAGATGGTCGGTATCCTCCAAACTTGGATGG TGTGCAGAGATCAATTGCTGGCTCTCATCTATCAAGTAATGCAAAGCCTGATGGCGAATCAGTTGAGGCATCTACTGATA ATCCATATAGAGGTACACTTGAGGAGCTAGATGGTTTCTGCATGGAGGGAAAACTGAAGGAAGCAGTTGAAGTTTTGGAA TTGTTGGTTAAGCTTCAAATTCATGTGGATTTGCCTCGATATTTGCGATTGATGCATCAGTGTGCAGAAGCTAAATCTCT TGAAGAGGCAAGGACTGTACACAGTCATGCTTTGTCACATCTGTCACCTCTAGAAGTTAGCACCTACAATAAAATACTGG AAATGTATTTTAAATGCGGTTCTGTAGATGACGCAATCAAGGTGTTCGATAATATGCCAGAGCGCAATTTGACTACTTGG GATACTATGATAACGCAACTTGCTAAGAATGGGTTTGCAGAAGACTCAATTGATCTATTCACTCAATTTAAAAAATTGGG ACAACCTGATGGTCAGATGTTCATTGCGGTTTTTGCTGTATGCAGTATGCTGGGAGATCTTGATGAGGGAATGCTGCACT TTGAATCCATGAGCAAGGATTATGGAATTGTACCATCTATGGCTCATTTTGTCAGTGTAGTAGACATGATTGGTAGTATT GGGCATCTTGATGAAGCCTTTGAATTCATTGAAAAGATGCCAATTGAACCAAGTGTTGATGTATGGAAGACTTTGATGAA TTTTTGTAGAGTTCATGGAAACACTGAGCTCGGCGATCGTTGTGCTGAACTAGTTGAGCAGCTGGATCCCACTCTCTTGA ATGAGGAGTCAAAGGTTGGCCTTTTACCGGTAGAACCTTCAGACTCGATAAAAGAGAGAGAAAAGAAATTAGCAAGTAAA AATCTGCTAGAAGTTAGGAGCCGAGTCCATGAATATCGAGCAGGAGATACTTCTCATCCTGAAAATGACAAGATTTATGC TCTTCTTAGAGGTCTGAGGACACAAATGAAAGAAGCTGGCTATATTCCAGAGGTAAAGTTTGTGCTGCATGACATTGACC AGGAAAGCAAAGAAGATGCTCTTCTTGCTCACAGTGAGAGACTTGCTGTTGCTTATGGTCTGATTAGCAGTTCTGCTCGC TCTCCTATTAGGGTGATTAAGAATCTCCGTGTTTGCGGTGATTGCCATACTGCACTGAAGATTATTTCTAAGATTGTGGG AAGAGAGTTCATCATTCGAGATGCTAAAAGGTTCCACCACTTTAAAGATGGGCTATGCTCCTGCCGGGATTATTGGTGA
Protein sequence (LotjaGi2g1v0455600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSRSASLVTINSLLRQFSKCEIADSVKGLNTFCTASAQRCDFHYSGGDQQNSAGSHHQSAGQSYRNSHAYQNVAQSNLA AHNGSVNGYYGQSNAKVPQDVGVVDNSRGFGMHPNAFVEKHNDTREPGQRVQHPNAFSSPRPLEYQGNIQGDLTQNTSPS WQSRKHSGYGQFQQSLIDGRYPPNLDGVQRSIAGSHLSSNAKPDGESVEASTDNPYRGTLEELDGFCMEGKLKEAVEVLE LLVKLQIHVDLPRYLRLMHQCAEAKSLEEARTVHSHALSHLSPLEVSTYNKILEMYFKCGSVDDAIKVFDNMPERNLTTW DTMITQLAKNGFAEDSIDLFTQFKKLGQPDGQMFIAVFAVCSMLGDLDEGMLHFESMSKDYGIVPSMAHFVSVVDMIGSI GHLDEAFEFIEKMPIEPSVDVWKTLMNFCRVHGNTELGDRCAELVEQLDPTLLNEESKVGLLPVEPSDSIKEREKKLASK NLLEVRSRVHEYRAGDTSHPENDKIYALLRGLRTQMKEAGYIPEVKFVLHDIDQESKEDALLAHSERLAVAYGLISSSAR SPIRVIKNLRVCGDCHTALKIISKIVGREFIIRDAKRFHHFKDGLCSCRDYW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 112 | 169 | 58 | - | – | |
| MobiDBLite | 129 | 169 | 41 | - | – | |
| MobiDBLite | 195 | 216 | 22 | - | – | |
| Gene3D | 219 | 377 | 159 | 3.0E-24 | ||
| Pfam | 223 | 245 | 23 | 0.14 | ||
| PANTHER | 237 | 444 | 208 | 8.6E-37 | – | |
| ProSiteProfiles | 250 | 280 | 31 | 5.415 | ||
| SUPERFAMILY | 260 | 447 | 188 | 2.51E-6 | ||
| ProSiteProfiles | 285 | 319 | 35 | 10.918 | ||
| Pfam | 287 | 316 | 30 | 2.5E-4 | ||
| TIGRFAM | 288 | 316 | 29 | 7.1E-6 | ||
| Pfam | 319 | 347 | 29 | 0.019 | ||
| ProSiteProfiles | 350 | 385 | 36 | 6.127 | ||
| ProSiteProfiles | 386 | 416 | 31 | 6.073 | ||
| Pfam | 482 | 602 | 121 | 3.2E-40 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi2g1v0455600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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