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LotjaGi2g1v0457000.3

Overview

Field Value
Gene ID LotjaGi2g1v0457000
Transcript ID LotjaGi2g1v0457000.3
Related isoforms 6
Lotus japonicus genome version Gifu v1.2
Description ARM repeat protein interacting WITH ABF2 protein; TAIR: AT5G19330.1 ARM repeat protein interacting with ABF2; Swiss-Prot: sp|B9DHT4|ARIA_ARATH ARM REPEAT PROTEIN INTERACTING WITH ABF2; TrEMBL-Plants: tr|A0A151TJY1|A0A151TJY1_CAJCA Vacuolar protein 8; Found in the gene: LotjaGi2g1v0457000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:95049427..95056587) extracted from Lotus japonicus Gifu genome v1.2.

ATTCAAGTGTGGATGGAACTTGAGGGTCGGCAAGATCAGTGCCTCCCGGAGGCGGAGAGGGAGAAGAAAGGCCAGAAGAG GAAGCTCGAACACCGTCAGATCTACGTTTCTCCCACCCTATTCTCCGACGTCTTGGATCACGTTTCAATTCTCCACTCCA CTTTCTCCTCCAATGATTCCGATCGAGCTGCTGCTAAGCGCGCCACTCACGCCCTCGCCGATCTTGCTAAAAACGGTATT CATTTATTCCTTTCCTTCATTCCATCGTTCAATTGCGCTGATTCATTCATTCGTTTTGCAGAGGAAGTTGTCAATGTCAT CGTTGAAGGAGGCGCCGTTCCGGCTTTGGTTAAGCATCTTCAACCGCCTCCTTTACCGGAAAATGACCGCATCATCATGC CGTTTCAACACGAGGTTGAGAAAGGGAGTGCGTTCGCACTCGGTCTTCTTGCCGTTAAGGTAACTTCACTTTTCTGCTTT CTCGTTGTGACTATTAGTATTTCTTAGGAATCATTACACCTGAACTTGTTTATGCTTCCAATTCTCCAATTTGCTCAACT CTATAGTACTCATGTTTGATATCATTCTCCAAACTCAGATTAAGCTTACTAGCTTTGTTTCAAATGCTATTTATTCCCTT TTTCAAAATAAAATCGTGTGCTTAGTTTATTTTGGCTAAATGATGTGAACGATTTTGGAAGCTTCAAAGATAATGCCAGG GGGAGGTCTAATTTGTCATGTAATTCCGAACCTGATCTAGCTTTTTTTGTTTCCAAATGCCTTCTACAGCCAGAACATCA ACAGCTCATCGTTGACAATGGTGCCTTGAAGCATCTTGTTGATCTTTTGGAGAGGCATAATGATGGCTTAACGTCTCGGG CCATTGCTAGTCTAATTCGTAGGGCTGCAGATGCCATTACGAATCTTGCTCATGAGAACAGCAGTGTTAAAACCCGAGTC AGGTTTGCTTCTTCAAGGACTTCCACGTAATACATACATTTAGTCTGAATTGTTACGAACTTGTGATTATCTGGAGTTAA TTTGTAGGATGGAAGGTGGGATTCCACCTCTTGTTCATTTGCTTGAATTTGCCGATATAAAGGTGCAAAGAGCAGCTGCT GGTGCATTGAGAACTCTGGCCTTTAAAAATGATGAAAATAAAAACCAAGTACGTGGTCTTTTGCTGAAAGTTTGATATAT ATATTGACTTCCATTTCCATATGATATGAGTAAGTCATATAACATCTTGACTTGTCAGATTGTTGAATGCAATGCGCTTC CGACTCTGATTCTAATGCTCCGTTCGGAAGATGCTGCTATTCATTATGAAGCGGTATTGCTTTTGTAACCCTAATTTATA CCTGCTTAATGTTGCAATATTGTTGAGTTTGGTCTTTACACTTATCTTACCGGGGACATCAATGTTTTTTTTTTTGTACC ACAGGTTGGTGTGATTGGAAATCTGGTCCACTCTTCCCCTAATATAAAAAAAGAAGTTCTTCTTGCTGGAGCCTTACAAC CTGTTATTGGATTGCTTAGGTATAATCTCAGCTTAGACCTGGAAAACCACAGTGATCTCTTTACCCCTTTCCAAACCCTG CCCTCAATTTGTAATGGTGTTATAATATCTCTGAAGTTCCTATTTTTCTTGGCAACACATATACTGCTGAAAAGGATATA TATCTATTAACCTATGGTGATGATGTTTTATCTAACAGCTCCTGTTGCTCTGAAAGTCAGAGGGAAGCAGCCTTATTACT TGGACAGTTTGCAGCAACTGATTCAGACTGCAAGGTAAGCACAAACTTTAGTTTCTAATTACATCTTTGTGACTTGTCTC AAGGGTACGGGAGTGGGAGGTAGAGAGGGAAACGACCTTGACACCTCTTGCCTATACTTAATGATTAGATGTGGAAGAGG GGTGGGAAAAGGCAACAATAGACGCCTGAACTTTAGTTTGGAGCAATTATTTTATAACTGCATCTTAAAAGGCTGGGTTC TTTGTGCTATTTAATTCTTTATAGGTAGGTGTTAGCTACTGGGTCGATGCTTCACGTATTGTGCGGCACCATTTTTAATT CTCACGTTCTCTCATTTGGTTTTTGTAGATTCACATTGTACAGAGAGGTGCTGTACGACCTTTGATAGAGATGCTTCAGT CCCCTGATGTTCAGCTCAGAGAAATGTCTGCCTTTGCATTGGGAAGATTGGCTCAGGTAACTGTTTTCCTTGTCTTTTCC ATGTTATAACTTATAATTCACGTGTGTAAGTTGAGTAGGTAAAATTATCATTATATCTATGAAAAATATTTGTTGGTCTT TTTCCTCTTTCTAACGTAGTTTTTGAATCCATAACATATATATACTCTAAAGATTTCCATCTTTGTGTTAGACCATAGTT ATCGAATTGTGATTCGTATTGTGTATCGGAAGACCCTAATTTTTGAATCATTAATCATATCGTTTAATGTATCATAAGAT GCAGATACAAAAAATTTAAGTCATAAATTGAATAACAAACTGATATATCATATAAATACTTCAAAATAATCAAATATCCA AGCCAAAAAAAAAAATAAGAAGAAAAATAGTTAGTGGTTGCACGAAGTTCAAGTGGTAAACACTTAACCCCTCAAAAACA AATGCAAGAATAGAGCACGTGAATAAGGGGGGACTGAGTGGTGCTGAAGAACAAAGGGCGGGGTACTAGGTTAACCAATT GGTGACAGGGGCGGGGGGAAATGGTGTTAAAGAACATGGGTGGGAGACCAAGCGGTGATAGAAAAACAAATCAGTCCCTG TTTGCAAGGAAGAAAGTGGTGCACATGAGAAGGTTGAGGTTGGACCAAATTAGAGTATTGTTTATAGTATTTTTTAACTT TGGTCATTAGGAGTTGAAGACTTTTGAAAAGAAAATTGAAAAAAAAATAAACCTTAAAGGGTGAGGAAGTAGTGATTCAT AAGAGCCAAGTCTCATACGATACATGCTATTCAGGGTGCATTCAGACTCAGATCGATACATACATGCGGCAAACCAAATC GAATCAGGAGGCGTATCGCACGATACAACCGATACTAACTAACATGTGTTAGAAATTATATTTAGTGAGCTTATCTTTGA GCGTCGAAGTCATCTTATCTTACTTACTAATTTAACATATTACAGCCTTTTAAATCCAAGTTTCACGTGTAAGTTAAATT GCACGTTCCTTTTAGCACCATGAGTAATTCCTCTGGCATGAAAATATTTAATTATAAATTTCAGGACACACATAACCAAG TTTCACGTGTAAGTTGAATTGCACGTTCCTTTTAGCACCATGAGTAATTCCTTTGGCATGAAAATATTTAATTATAATTT TCAGGACACACATAACCAAGCTGGTATTGCACACAGTGGTGGTTTAGTGCCATTACTGAAGCTTCTTGACTCAAAAAATG GGTCTCTGCAACATAATGCTGCTTTTGCTCTTTATGGCCTTGCAGATAATGAGGTAAGCTAAACTGTAAGAATTCTATTG AAGATCTTCTACCATTATTTACTGAAAACCAAAGTTAATTAACTTTTTTTTGTTGTTGTTTTACTTTGTCACATAGGATA ATGTGTCCGATTTTATTAGGGTAGGTGGAATTCAGAGATTGCTGGATGGAGAGTTTATTGTTCAAGTAAGTTTAACTCTA TCGTACCTTGGAAGTAGCTCTGGTTTCAGGATTTTTCTGCCTCTAGGCACTTTGTTTCCTATATCAATAGGAATTCAATG CTTCAGATGACTGCGAATTTTATCTTCATGAATTGGAAAAATTAGTCTTCTCGACACACTGATAGGAATTTTTTTGGATT GGAATTGGTTTCTATTTCAGGCAACTAAAGATTGTGTTGCAAAGACATTGAAAAGATTAGAAGAGAAAATTCATGGCCGT GTAAGCACAACTTCAGATTGATTTGTTTCTATATGCTTTATTACTGAAATTGACATGAAAATGACAAGGATGCTATAACT CTATCAATTTTCAGTTCCATAAGTTCTATACAACAACAACTACCAAGCCTCATCTACCAAGTTGAGTTTTATATGATGAT AAAATTTGTAATCTGTTGATTTCTCTTTGTAGGCACTGAACCATTTATTATATCTTATGCGAGTTTCGGAAAAGGCTTTT CAAAGACGAGTTGCTTTGGCACTTGCTCATCTTTGTTCTGCAAATGATCAGAGAAAAATATTTATTGATCACCACGGTAG GCATCTTAGTCAAATCTTTTGCGTAAATGTGATGTATCTTATTTCTAGCTTATAATATCGGTTTTGTGGGTGCTTTATTG CTTGTTCTATTCTATTCGAAGCTGAGCATCTACCCATGCAGGTTTGGAGTTACTTATTGGGCTTCTTGGCTCATCCAGCC CTAAGCCGAAACTTGATGGGGCTGTGGCTTTATGCAAGTTGGCCAACAAAGCTATGACTTTGTCTCCCATAGATGCCGCC CCCCCTTCTCCAACACCCCAGGTAGGCTTATATAAAGCTTGACATGTGACATGCCCTCAGTCTTCATTATCATAAGCTCA CCTCTAGGCACTAGGAGTCCCCCCCCTCCCCCAAAGATCTCAATGCTTTACCTGTACATTGGTGTTTCTTGTTCACAAAT TTCTTTTCATGTCTTATTCTTGATGATATAGGAAAACTCATGCTTCAAAAGCCAAAAGTATTAGCTGTGACTATGAGGCT GTTTACTTATTTGCATCCTATCTCTTAGCCCATATAGTAGTGTGTGGAACAATGCAGACTTTTCCCCCAGTTATGCACAT AATATTGGGTTTGGCATGTTTTGATATCTCTTGGTGTTTAAAGTTGGTTTGAATATCTGTGTGATTATGTGTAGTTATAA ATATATGCCATATGGCCCTTTAATTAATTGGCATCTGCTCACTGAATAATCAATAGTTAATACGATCAATGTCTTCCATA TTATACGTCTGCTACTTGCATAAGAAGCCAGCTGTCTTGTCTAAATAATTCTGGATAAGGTGTTGTTCAGAGTTGGAATA TCTTTCATCCTAGACTCGTCTTCTCGCAGGTCTATTTGGGAGAGCAGTATGTAAACAATGCTACGTTGTCTGATGTTACA TTTTTGGTCGAAGGTTGGTGCTTTTCATCCATATTGTTTTTCTCGTAAATGTTGCTTGGAAAATAATTGAAATGAAGTGC TGTAGCTTCAGTTGATATTGGTAGATAACCAGGTATCTTCATACTTTGCTGCAGGCAAACGGTTTTATGCTCACAGAATT TGCCTTCTCGCATCTTCAGATGCATTTCATGCAATGTTTGATGGTGGTTATAGGGTGGGTATATATTGTTCTCCCCCAGT GAATCACATTCTCCTCCCTCTCCACCAGTATTCTCTTTGTTATTAGTTGAGTATTGGCCAAACGAAGAAAGATCTATTGT TGACCCCTCCTGATTACATGAGAAGCATTATTTATTACCAATTATTTTGGTTTTAAAATGCTTTCTCTACCTCGTGAAAA CTTTAATTGGAAATTTGATTATTGAATAAACGGTGAATTGAAACATCAAATTAGAAGTTTATTTCTTATTTTATTCTAAG TTAAAAATCTATGTCTGATATACAATTCATTTGTTGTATGACAGGAAAAGGATGCACGGGACATAGAGATTCCAAATATT AGATGGGAGGTTTTTGAGCTGATGATGAGGTCTGATGACGCCCCTTACAAAAGTTGTAAATTGATAGCTAGTAATGATAT GTGGACAACTTAAATCTCATTGTTTCATCTTTGTCCAGATTTATATATACTGGATCAGTTGATGTCACCCTTGATATTGC CCAAGATCTCCTCCGAGCAGCTGATCAATATCTTTTAGAAGGGCTTAAGAGACTCTGCGAATACACAATTGGACAGGTTA GCTAAAAGATGTGGTTTTGTTGCACAACACTATTAAACCTGCACTAGTTTTACACATGAAGGTGGATTCCTCATTATTTG ATGTTTTTCGTCGCAGGATATATCGCTGGAGAATGTGTCAAGTATGTATGAACTTTCTGAAGCTTTTCATGCTATATCGT TGAGGAAAACATGCATCCTTTATATCTTGGAGCACTTTGATAAATTGAGTGCAAGGCCAGGGTATGATCTTACTCCCCCA ATTTTGTATTTGCTTCTTGTAGATGTTTCTTTTCCTCTGTAACATATATTGGATTTTTATTATAAACAAATTAATACGCA ATCTTAAATAGAATATGTAAAGAATCTTGGGTAAACTGTAGGCTAGTCGCACTTGCTTTTTTTTACTCACTTTCTTTATG TTCTTTGTAATTTTAGTAAACCATGTGCTGGCCTAAAAGGAATTCAAATATTTTAAGTTTTTGTTCACTGCTTAAACAAT GACATTATCTCATGGAGGTCTAAATAAAAATTATGCATACTATTATCTAGTAATAAATAAGCACTAGCTCTTCAGCATCA TGAACTATTTCACATATTGAGGGGGTGGATGAGTAAAGGTTTCTCAGGTGGCATTTGGGATGGGGATGTGTGTATGGTTT TCGCATACATTTGAAGAAAGTAGTAAACTTGGTTCCCATGATCCTTTTTTTCATTTTAATGATTTAGTGGCAACTAGATA ACATATATTTCGCTTGTTTTTTTTTTATAGTTTTAAGATGAGAAATAAAGGCTTTGATTTTTATTTTTTATATATGATCA ATTGATCATGAAAATGTGCAAAGTCCATATACTTAATTCATGAATATGTTGATTGAAATACACGTTTTTTAATATTTCAT TCATTTTATCTTAATTCTCAAGCTTCTTAAGTTTCTTTTGCACCAACTATTTTGCAGACACTCTCATCTGATTCAGCTTA TAATACCCGAGATCCGCAATTACTTTGTTAAAGCGCTTACAAAGGCCAATCCCAACATCCAGGCGCAGGATCAGCCATTT TATTATTGAAACCTAACCGATCTCAATGTACATAATGTGATAGATGTCCTTCCTTTATTTTGATCCTGAGAAGGAGGTCT CCTGGATTGAATACTGCAAAGCTGAAACTTGAAAGAAATAACTAACACCAGGTCATGTACGTTTTTCTGATGCTGTACCC TTATGGCTGCAACGTTATTGTGATTGATGTAGCATATATGA 

CDS sequence (LotjaGi2g1v0457000.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAACTTGAGGGTCGGCAAGATCAGTGCCTCCCGGAGGCGGAGAGGGAGAAGAAAGGCCAGAAGAGGAAGCTCGAACA CCGTCAGATCTACGTTTCTCCCACCCTATTCTCCGACGTCTTGGATCACGTTTCAATTCTCCACTCCACTTTCTCCTCCA ATGATTCCGATCGAGCTGCTGCTAAGCGCGCCACTCACGCCCTCGCCGATCTTGCTAAAAACGAGGAAGTTGTCAATGTC ATCGTTGAAGGAGGCGCCGTTCCGGCTTTGGTTAAGCATCTTCAACCGCCTCCTTTACCGGAAAATGACCGCATCATCAT GCCGTTTCAACACGAGGTTGAGAAAGGGAGTGCGTTCGCACTCGGTCTTCTTGCCGTTAAGCCAGAACATCAACAGCTCA TCGTTGACAATGGTGCCTTGAAGCATCTTGTTGATCTTTTGGAGAGGCATAATGATGGCTTAACGTCTCGGGCCATTGCT AGTCTAATTCGTAGGGCTGCAGATGCCATTACGAATCTTGCTCATGAGAACAGCAGTGTTAAAACCCGAGTCAGGATGGA AGGTGGGATTCCACCTCTTGTTCATTTGCTTGAATTTGCCGATATAAAGGTGCAAAGAGCAGCTGCTGGTGCATTGAGAA CTCTGGCCTTTAAAAATGATGAAAATAAAAACCAAATTGTTGAATGCAATGCGCTTCCGACTCTGATTCTAATGCTCCGT TCGGAAGATGCTGCTATTCATTATGAAGCGGTTGGTGTGATTGGAAATCTGGTCCACTCTTCCCCTAATATAAAAAAAGA AGTTCTTCTTGCTGGAGCCTTACAACCTGTTATTGGATTGCTTAGCTCCTGTTGCTCTGAAAGTCAGAGGGAAGCAGCCT TATTACTTGGACAGTTTGCAGCAACTGATTCAGACTGCAAGATTCACATTGTACAGAGAGGTGCTGTACGACCTTTGATA GAGATGCTTCAGTCCCCTGATGTTCAGCTCAGAGAAATGTCTGCCTTTGCATTGGGAAGATTGGCTCAGGACACACATAA CCAAGCTGGTATTGCACACAGTGGTGGTTTAGTGCCATTACTGAAGCTTCTTGACTCAAAAAATGGGTCTCTGCAACATA ATGCTGCTTTTGCTCTTTATGGCCTTGCAGATAATGAGGATAATGTGTCCGATTTTATTAGGGTAGGTGGAATTCAGAGA TTGCTGGATGGAGAGTTTATTGTTCAAGCAACTAAAGATTGTGTTGCAAAGACATTGAAAAGATTAGAAGAGAAAATTCA TGGCCGTGCACTGAACCATTTATTATATCTTATGCGAGTTTCGGAAAAGGCTTTTCAAAGACGAGTTGCTTTGGCACTTG CTCATCTTTGTTCTGCAAATGATCAGAGAAAAATATTTATTGATCACCACGGTTTGGAGTTACTTATTGGGCTTCTTGGC TCATCCAGCCCTAAGCCGAAACTTGATGGGGCTGTGGCTTTATGCAAGTTGGCCAACAAAGCTATGACTTTGTCTCCCAT AGATGCCGCCCCCCCTTCTCCAACACCCCAGGTCTATTTGGGAGAGCAGTATGTAAACAATGCTACGTTGTCTGATGTTA CATTTTTGGTCGAAGGCAAACGGTTTTATGCTCACAGAATTTGCCTTCTCGCATCTTCAGATGCATTTCATGCAATGTTT GATGGTGGTTATAGGGAAAAGGATGCACGGGACATAGAGATTCCAAATATTAGATGGGAGGTTTTTGAGCTGATGATGAG ATTTATATATACTGGATCAGTTGATGTCACCCTTGATATTGCCCAAGATCTCCTCCGAGCAGCTGATCAATATCTTTTAG AAGGGCTTAAGAGACTCTGCGAATACACAATTGGACAGGATATATCGCTGGAGAATGTGTCAAGTATGTATGAACTTTCT GAAGCTTTTCATGCTATATCGTTGAGGAAAACATGCATCCTTTATATCTTGGAGCACTTTGATAAATTGAGTGCAAGGCC AGGACACTCTCATCTGATTCAGCTTATAATACCCGAGATCCGCAATTACTTTGTTAAAGCGCTTACAAAGGCCAATCCCA ACATCCAGCATATATGA 

Protein sequence (LotjaGi2g1v0457000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MELEGRQDQCLPEAEREKKGQKRKLEHRQIYVSPTLFSDVLDHVSILHSTFSSNDSDRAAAKRATHALADLAKNEEVVNV IVEGGAVPALVKHLQPPPLPENDRIIMPFQHEVEKGSAFALGLLAVKPEHQQLIVDNGALKHLVDLLERHNDGLTSRAIA SLIRRAADAITNLAHENSSVKTRVRMEGGIPPLVHLLEFADIKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR SEDAAIHYEAVGVIGNLVHSSPNIKKEVLLAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKIHIVQRGAVRPLI EMLQSPDVQLREMSAFALGRLAQDTHNQAGIAHSGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVSDFIRVGGIQR LLDGEFIVQATKDCVAKTLKRLEEKIHGRALNHLLYLMRVSEKAFQRRVALALAHLCSANDQRKIFIDHHGLELLIGLLG SSSPKPKLDGAVALCKLANKAMTLSPIDAAPPSPTPQVYLGEQYVNNATLSDVTFLVEGKRFYAHRICLLASSDAFHAMF DGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIGQDISLENVSSMYELS EAFHAISLRKTCILYILEHFDKLSARPGHSHLIQLIIPEIRNYFVKALTKANPNIQHI 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite 1 25 25 -
PANTHER 21 690 670 0.0
PANTHER 21 690 670 0.0
SUPERFAMILY 44 402 359 6.04E-56
Gene3D 50 162 113 1.3E-11
SMART 74 126 53 33.0
ProSiteProfiles 85 139 55 8.732
SMART 127 175 49 2.3E-5
ProSiteProfiles 138 188 51 10.657
Gene3D 163 264 102 1.5E-29
SMART 177 217 41 2.9E-7
Pfam 184 216 33 2.6E-7
ProSiteProfiles 188 223 36 12.267
Pfam 219 258 40 3.8E-7
SMART 219 259 41 4.6E-6
ProSiteProfiles 230 272 43 9.537
SMART 261 301 41 1.5
Gene3D 265 409 145 1.5E-26
Pfam 303 342 40 2.9E-5
SMART 303 343 41 0.0014
ProSiteProfiles 314 356 43 10.867
SMART 344 384 41 5.4
ProSiteProfiles 355 397 43 9.887
Gene3D 410 506 97 3.4E-9
SUPERFAMILY 429 604 176 8.25E-8
SMART 459 499 41 22.0
CDD 518 633 116 2.93694E-78
Gene3D 522 666 145 1.1E-42
SUPERFAMILY 523 624 102 1.69E-29
Pfam 524 624 101 1.7E-25
ProSiteProfiles 531 598 68 18.307
SMART 531 628 98 8.2E-24
CDD 627 690 64 6.65188E-27

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0457000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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