Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi2g1v0457000.6

Overview

Field Value
Gene ID LotjaGi2g1v0457000
Transcript ID LotjaGi2g1v0457000.6
Related isoforms 6
Lotus japonicus genome version Gifu v1.2
Description Arm repeat interacting with abf2-like protein; TAIR: AT5G19330.1 ARM repeat protein interacting with ABF2; Swiss-Prot: sp|B9DHT4|ARIA_ARATH ARM REPEAT PROTEIN INTERACTING WITH ABF2; TrEMBL-Plants: tr|A0A151TJY1|A0A151TJY1_CAJCA Vacuolar protein 8; Found in the gene: LotjaGi2g1v0457000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:95049439..95056587) extracted from Lotus japonicus Gifu genome v1.2.

ATGGAACTTGAGGGTCGGCAAGATCAGTGCCTCCCGGAGGCGGAGAGGGAGAAGAAAGGCCAGAAGAGGAAGCTCGAACA CCGTCAGATCTACGTTTCTCCCACCCTATTCTCCGACGTCTTGGATCACGTTTCAATTCTCCACTCCACTTTCTCCTCCA ATGATTCCGATCGAGCTGCTGCTAAGCGCGCCACTCACGCCCTCGCCGATCTTGCTAAAAACGGTATTCATTTATTCCTT TCCTTCATTCCATCGTTCAATTGCGCTGATTCATTCATTCGTTTTGCAGAGGAAGTTGTCAATGTCATCGTTGAAGGAGG CGCCGTTCCGGCTTTGGTTAAGCATCTTCAACCGCCTCCTTTACCGGAAAATGACCGCATCATCATGCCGTTTCAACACG AGGTTGAGAAAGGGAGTGCGTTCGCACTCGGTCTTCTTGCCGTTAAGGTAACTTCACTTTTCTGCTTTCTCGTTGTGACT ATTAGTATTTCTTAGGAATCATTACACCTGAACTTGTTTATGCTTCCAATTCTCCAATTTGCTCAACTCTATAGTACTCA TGTTTGATATCATTCTCCAAACTCAGATTAAGCTTACTAGCTTTGTTTCAAATGCTATTTATTCCCTTTTTCAAAATAAA ATCGTGTGCTTAGTTTATTTTGGCTAAATGATGTGAACGATTTTGGAAGCTTCAAAGATAATGCCAGGGGGAGGTCTAAT TTGTCATGTAATTCCGAACCTGATCTAGCTTTTTTTGTTTCCAAATGCCTTCTACAGCCAGAACATCAACAGCTCATCGT TGACAATGGTGCCTTGAAGCATCTTGTTGATCTTTTGGAGAGGCATAATGATGGCTTAACGTCTCGGGCCATTGCTAGTC TAATTCGTAGGGCTGCAGATGCCATTACGAATCTTGCTCATGAGAACAGCAGTGTTAAAACCCGAGTCAGGTTTGCTTCT TCAAGGACTTCCACGTAATACATACATTTAGTCTGAATTGTTACGAACTTGTGATTATCTGGAGTTAATTTGTAGGATGG AAGGTGGGATTCCACCTCTTGTTCATTTGCTTGAATTTGCCGATATAAAGGTGCAAAGAGCAGCTGCTGGTGCATTGAGA ACTCTGGCCTTTAAAAATGATGAAAATAAAAACCAAGTACGTGGTCTTTTGCTGAAAGTTTGATATATATATTGACTTCC ATTTCCATATGATATGAGTAAGTCATATAACATCTTGACTTGTCAGATTGTTGAATGCAATGCGCTTCCGACTCTGATTC TAATGCTCCGTTCGGAAGATGCTGCTATTCATTATGAAGCGGTATTGCTTTTGTAACCCTAATTTATACCTGCTTAATGT TGCAATATTGTTGAGTTTGGTCTTTACACTTATCTTACCGGGGACATCAATGTTTTTTTTTTTGTACCACAGGTTGGTGT GATTGGAAATCTGGTCCACTCTTCCCCTAATATAAAAAAAGAAGTTCTTCTTGCTGGAGCCTTACAACCTGTTATTGGAT TGCTTAGGTATAATCTCAGCTTAGACCTGGAAAACCACAGTGATCTCTTTACCCCTTTCCAAACCCTGCCCTCAATTTGT AATGGTGTTATAATATCTCTGAAGTTCCTATTTTTCTTGGCAACACATATACTGCTGAAAAGGATATATATCTATTAACC TATGGTGATGATGTTTTATCTAACAGCTCCTGTTGCTCTGAAAGTCAGAGGGAAGCAGCCTTATTACTTGGACAGTTTGC AGCAACTGATTCAGACTGCAAGGTAAGCACAAACTTTAGTTTCTAATTACATCTTTGTGACTTGTCTCAAGGGTACGGGA GTGGGAGGTAGAGAGGGAAACGACCTTGACACCTCTTGCCTATACTTAATGATTAGATGTGGAAGAGGGGTGGGAAAAGG CAACAATAGACGCCTGAACTTTAGTTTGGAGCAATTATTTTATAACTGCATCTTAAAAGGCTGGGTTCTTTGTGCTATTT AATTCTTTATAGGTAGGTGTTAGCTACTGGGTCGATGCTTCACGTATTGTGCGGCACCATTTTTAATTCTCACGTTCTCT CATTTGGTTTTTGTAGATTCACATTGTACAGAGAGGTGCTGTACGACCTTTGATAGAGATGCTTCAGTCCCCTGATGTTC AGCTCAGAGAAATGTCTGCCTTTGCATTGGGAAGATTGGCTCAGGTAACTGTTTTCCTTGTCTTTTCCATGTTATAACTT ATAATTCACGTGTGTAAGTTGAGTAGGTAAAATTATCATTATATCTATGAAAAATATTTGTTGGTCTTTTTCCTCTTTCT AACGTAGTTTTTGAATCCATAACATATATATACTCTAAAGATTTCCATCTTTGTGTTAGACCATAGTTATCGAATTGTGA TTCGTATTGTGTATCGGAAGACCCTAATTTTTGAATCATTAATCATATCGTTTAATGTATCATAAGATGCAGATACAAAA AATTTAAGTCATAAATTGAATAACAAACTGATATATCATATAAATACTTCAAAATAATCAAATATCCAAGCCAAAAAAAA AAATAAGAAGAAAAATAGTTAGTGGTTGCACGAAGTTCAAGTGGTAAACACTTAACCCCTCAAAAACAAATGCAAGAATA GAGCACGTGAATAAGGGGGGACTGAGTGGTGCTGAAGAACAAAGGGCGGGGTACTAGGTTAACCAATTGGTGACAGGGGC GGGGGGAAATGGTGTTAAAGAACATGGGTGGGAGACCAAGCGGTGATAGAAAAACAAATCAGTCCCTGTTTGCAAGGAAG AAAGTGGTGCACATGAGAAGGTTGAGGTTGGACCAAATTAGAGTATTGTTTATAGTATTTTTTAACTTTGGTCATTAGGA GTTGAAGACTTTTGAAAAGAAAATTGAAAAAAAAATAAACCTTAAAGGGTGAGGAAGTAGTGATTCATAAGAGCCAAGTC TCATACGATACATGCTATTCAGGGTGCATTCAGACTCAGATCGATACATACATGCGGCAAACCAAATCGAATCAGGAGGC GTATCGCACGATACAACCGATACTAACTAACATGTGTTAGAAATTATATTTAGTGAGCTTATCTTTGAGCGTCGAAGTCA TCTTATCTTACTTACTAATTTAACATATTACAGCCTTTTAAATCCAAGTTTCACGTGTAAGTTAAATTGCACGTTCCTTT TAGCACCATGAGTAATTCCTCTGGCATGAAAATATTTAATTATAAATTTCAGGACACACATAACCAAGTTTCACGTGTAA GTTGAATTGCACGTTCCTTTTAGCACCATGAGTAATTCCTTTGGCATGAAAATATTTAATTATAATTTTCAGGACACACA TAACCAAGCTGGTATTGCACACAGTGGTGGTTTAGTGCCATTACTGAAGCTTCTTGACTCAAAAAATGGGTCTCTGCAAC ATAATGCTGCTTTTGCTCTTTATGGCCTTGCAGATAATGAGGTAAGCTAAACTGTAAGAATTCTATTGAAGATCTTCTAC CATTATTTACTGAAAACCAAAGTTAATTAACTTTTTTTTGTTGTTGTTTTACTTTGTCACATAGGATAATGTGTCCGATT TTATTAGGGTAGGTGGAATTCAGAGATTGCTGGATGGAGAGTTTATTGTTCAAGTAAGTTTAACTCTATCGTACCTTGGA AGTAGCTCTGGTTTCAGGATTTTTCTGCCTCTAGGCACTTTGTTTCCTATATCAATAGGAATTCAATGCTTCAGATGACT GCGAATTTTATCTTCATGAATTGGAAAAATTAGTCTTCTCGACACACTGATAGGAATTTTTTTGGATTGGAATTGGTTTC TATTTCAGGCAACTAAAGATTGTGTTGCAAAGACATTGAAAAGATTAGAAGAGAAAATTCATGGCCGTGTAAGCACAACT TCAGATTGATTTGTTTCTATATGCTTTATTACTGAAATTGACATGAAAATGACAAGGATGCTATAACTCTATCAATTTTC AGTTCCATAAGTTCTATACAACAACAACTACCAAGCCTCATCTACCAAGTTGAGTTTTATATGATGATAAAATTTGTAAT CTGTTGATTTCTCTTTGTAGGCACTGAACCATTTATTATATCTTATGCGAGTTTCGGAAAAGGCTTTTCAAAGACGAGTT GCTTTGGCACTTGCTCATCTTTGTTCTGCAAATGATCAGAGAAAAATATTTATTGATCACCACGGTAGGCATCTTAGTCA AATCTTTTGCGTAAATGTGATGTATCTTATTTCTAGCTTATAATATCGGTTTTGTGGGTGCTTTATTGCTTGTTCTATTC TATTCGAAGCTGAGCATCTACCCATGCAGGTTTGGAGTTACTTATTGGGCTTCTTGGCTCATCCAGCCCTAAGCCGAAAC TTGATGGGGCTGTGGCTTTATGCAAGTTGGCCAACAAAGCTATGACTTTGTCTCCCATAGATGCCGCCCCCCCTTCTCCA ACACCCCAGGTAGGCTTATATAAAGCTTGACATGTGACATGCCCTCAGTCTTCATTATCATAAGCTCACCTCTAGGCACT AGGAGTCCCCCCCCTCCCCCAAAGATCTCAATGCTTTACCTGTACATTGGTGTTTCTTGTTCACAAATTTCTTTTCATGT CTTATTCTTGATGATATAGGAAAACTCATGCTTCAAAAGCCAAAAGTATTAGCTGTGACTATGAGGCTGTTTACTTATTT GCATCCTATCTCTTAGCCCATATAGTAGTGTGTGGAACAATGCAGACTTTTCCCCCAGTTATGCACATAATATTGGGTTT GGCATGTTTTGATATCTCTTGGTGTTTAAAGTTGGTTTGAATATCTGTGTGATTATGTGTAGTTATAAATATATGCCATA TGGCCCTTTAATTAATTGGCATCTGCTCACTGAATAATCAATAGTTAATACGATCAATGTCTTCCATATTATACGTCTGC TACTTGCATAAGAAGCCAGCTGTCTTGTCTAAATAATTCTGGATAAGGTGTTGTTCAGAGTTGGAATATCTTTCATCCTA GACTCGTCTTCTCGCAGGTCTATTTGGGAGAGCAGTATGTAAACAATGCTACGTTGTCTGATGTTACATTTTTGGTCGAA GGTTGGTGCTTTTCATCCATATTGTTTTTCTCGTAAATGTTGCTTGGAAAATAATTGAAATGAAGTGCTGTAGCTTCAGT TGATATTGGTAGATAACCAGGTATCTTCATACTTTGCTGCAGGCAAACGGTTTTATGCTCACAGAATTTGCCTTCTCGCA TCTTCAGATGCATTTCATGCAATGTTTGATGGTGGTTATAGGGTGGGTATATATTGTTCTCCCCCAGTGAATCACATTCT CCTCCCTCTCCACCAGTATTCTCTTTGTTATTAGTTGAGTATTGGCCAAACGAAGAAAGATCTATTGTTGACCCCTCCTG ATTACATGAGAAGCATTATTTATTACCAATTATTTTGGTTTTAAAATGCTTTCTCTACCTCGTGAAAACTTTAATTGGAA ATTTGATTATTGAATAAACGGTGAATTGAAACATCAAATTAGAAGTTTATTTCTTATTTTATTCTAAGTTAAAAATCTAT GTCTGATATACAATTCATTTGTTGTATGACAGGAAAAGGATGCACGGGACATAGAGATTCCAAATATTAGATGGGAGGTT TTTGAGCTGATGATGAGGTCTGATGACGCCCCTTACAAAAGTTGTAAATTGATAGCTAGTAATGATATGTGGACAACTTA AATCTCATTGTTTCATCTTTGTCCAGATTTATATATACTGGATCAGTTGATGTCACCCTTGATATTGCCCAAGATCTCCT CCGAGCAGCTGATCAATATCTTTTAGAAGGGCTTAAGAGACTCTGCGAATACACAATTGGACAGGTTAGCTAAAAGATGT GGTTTTGTTGCACAACACTATTAAACCTGCACTAGTTTTACACATGAAGGTGGATTCCTCATTATTTGATGTTTTTCGTC GCAGGATATATCGCTGGAGAATGTGTCAAGTATGTATGAACTTTCTGAAGCTTTTCATGCTATATCGTTGAGGAAAACAT GCATCCTTTATATCTTGGAGCACTTTGATAAATTGAGTGCAAGGCCAGGGTATGATCTTACTCCCCCAATTTTGTATTTG CTTCTTGTAGATGTTTCTTTTCCTCTGTAACATATATTGGATTTTTATTATAAACAAATTAATACGCAATCTTAAATAGA ATATGTAAAGAATCTTGGGTAAACTGTAGGCTAGTCGCACTTGCTTTTTTTTACTCACTTTCTTTATGTTCTTTGTAATT TTAGTAAACCATGTGCTGGCCTAAAAGGAATTCAAATATTTTAAGTTTTTGTTCACTGCTTAAACAATGACATTATCTCA TGGAGGTCTAAATAAAAATTATGCATACTATTATCTAGTAATAAATAAGCACTAGCTCTTCAGCATCATGAACTATTTCA CATATTGAGGGGGTGGATGAGTAAAGGTTTCTCAGGTGGCATTTGGGATGGGGATGTGTGTATGGTTTTCGCATACATTT GAAGAAAGTAGTAAACTTGGTTCCCATGATCCTTTTTTTCATTTTAATGATTTAGTGGCAACTAGATAACATATATTTCG CTTGTTTTTTTTTTATAGTTTTAAGATGAGAAATAAAGGCTTTGATTTTTATTTTTTATATATGATCAATTGATCATGAA AATGTGCAAAGTCCATATACTTAATTCATGAATATGTTGATTGAAATACACGTTTTTTAATATTTCATTCATTTTATCTT AATTCTCAAGCTTCTTAAGTTTCTTTTGCACCAACTATTTTGCAGACACTCTCATCTGATTCAGCTTATAATACCCGAGA TCCGCAATTACTTTGTTAAAGCGCTTACAAAGGCCAATCCCAACATCCAGGCGCAGGATCAGCCATTTTATTATTGAAAC CTAACCGATCTCAATGTACATAATGTGATAGATGTCCTTCCTTTATTTTGATCCTGAGAAGGAGGTCTCCTGGATTGAAT ACTGCAAAGCTGAAACTTGAAAGAAATAACTAACACCAGGTCATGTACGTTTTTCTGATGCTGTACCCTTATGGCTGCAA CGTTATTGTGATTGATGTAGCATATATGA 

CDS sequence (LotjaGi2g1v0457000.6) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAACTTGAGGGTCGGCAAGATCAGTGCCTCCCGGAGGCGGAGAGGGAGAAGAAAGGCCAGAAGAGGAAGCTCGAACA CCGTCAGATCTACGTTTCTCCCACCCTATTCTCCGACGTCTTGGATCACGTTTCAATTCTCCACTCCACTTTCTCCTCCA ATGATTCCGATCGAGCTGCTGCTAAGCGCGCCACTCACGCCCTCGCCGATCTTGCTAAAAACGAGGAAGTTGTCAATGTC ATCGTTGAAGGAGGCGCCGTTCCGGCTTTGGTTAAGCATCTTCAACCGCCTCCTTTACCGGAAAATGACCGCATCATCAT GCCGTTTCAACACGAGGTTGAGAAAGGGAGTGCGTTCGCACTCGGTCTTCTTGCCGTTAAGAGGCATAATGATGGCTTAA CGTCTCGGGCCATTGCTAGTCTAATTCGTAGGGCTGCAGATGCCATTACGAATCTTGCTCATGAGAACAGCAGTGTTAAA ACCCGAGTCAGGATGGAAGGTGGGATTCCACCTCTTGTTCATTTGCTTGAATTTGCCGATATAAAGGTGCAAAGAGCAGC TGCTGGTGCATTGAGAACTCTGGCCTTTAAAAATGATGAAAATAAAAACCAAATTGTTGAATGCAATGCGCTTCCGACTC TGATTCTAATGCTCCGTTCGGAAGATGCTGCTATTCATTATGAAGCGGTTGGTGTGATTGGAAATCTGGTCCACTCTTCC CCTAATATAAAAAAAGAAGTTCTTCTTGCTGGAGCCTTACAACCTGTTATTGGATTGCTTAGCTCCTGTTGCTCTGAAAG TCAGAGGGAAGCAGCCTTATTACTTGGACAGTTTGCAGCAACTGATTCAGACTGCAAGATTCACATTGTACAGAGAGGTG CTGTACGACCTTTGATAGAGATGCTTCAGTCCCCTGATGTTCAGCTCAGAGAAATGTCTGCCTTTGCATTGGGAAGATTG GCTCAGGACACACATAACCAAGCTGGTATTGCACACAGTGGTGGTTTAGTGCCATTACTGAAGCTTCTTGACTCAAAAAA TGGGTCTCTGCAACATAATGCTGCTTTTGCTCTTTATGGCCTTGCAGATAATGAGGATAATGTGTCCGATTTTATTAGGG TAGGTGGAATTCAGAGATTGCTGGATGGAGAGTTTATTGTTCAAGCAACTAAAGATTGTGTTGCAAAGACATTGAAAAGA TTAGAAGAGAAAATTCATGGCCGTGCACTGAACCATTTATTATATCTTATGCGAGTTTCGGAAAAGGCTTTTCAAAGACG AGTTGCTTTGGCACTTGCTCATCTTTGTTCTGCAAATGATCAGAGAAAAATATTTATTGATCACCACGGTTTGGAGTTAC TTATTGGGCTTCTTGGCTCATCCAGCCCTAAGCCGAAACTTGATGGGGCTGTGGCTTTATGCAAGTTGGCCAACAAAGCT ATGACTTTGTCTCCCATAGATGCCGCCCCCCCTTCTCCAACACCCCAGGTCTATTTGGGAGAGCAGTATGTAAACAATGC TACGTTGTCTGATGTTACATTTTTGGTCGAAGGCAAACGGTTTTATGCTCACAGAATTTGCCTTCTCGCATCTTCAGATG CATTTCATGCAATGTTTGATGGTGGTTATAGGGAAAAGGATGCACGGGACATAGAGATTCCAAATATTAGATGGGAGGTT TTTGAGCTGATGATGAGATTTATATATACTGGATCAGTTGATGTCACCCTTGATATTGCCCAAGATCTCCTCCGAGCAGC TGATCAATATCTTTTAGAAGGGCTTAAGAGACTCTGCGAATACACAATTGGACAGGATATATCGCTGGAGAATGTGTCAA GTATGTATGAACTTTCTGAAGCTTTTCATGCTATATCGTTGAGGAAAACATGCATCCTTTATATCTTGGAGCACTTTGAT AAATTGAGTGCAAGGCCAGGACACTCTCATCTGATTCAGCTTATAATACCCGAGATCCGCAATTACTTTGTTAAAGCGCT TACAAAGGCCAATCCCAACATCCAGCATATATGA 

Protein sequence (LotjaGi2g1v0457000.6) extracted from Lotus japonicus Gifu v1.2 Proteins.

MELEGRQDQCLPEAEREKKGQKRKLEHRQIYVSPTLFSDVLDHVSILHSTFSSNDSDRAAAKRATHALADLAKNEEVVNV IVEGGAVPALVKHLQPPPLPENDRIIMPFQHEVEKGSAFALGLLAVKRHNDGLTSRAIASLIRRAADAITNLAHENSSVK TRVRMEGGIPPLVHLLEFADIKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDAAIHYEAVGVIGNLVHSS PNIKKEVLLAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKIHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL AQDTHNQAGIAHSGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVSDFIRVGGIQRLLDGEFIVQATKDCVAKTLKR LEEKIHGRALNHLLYLMRVSEKAFQRRVALALAHLCSANDQRKIFIDHHGLELLIGLLGSSSPKPKLDGAVALCKLANKA MTLSPIDAAPPSPTPQVYLGEQYVNNATLSDVTFLVEGKRFYAHRICLLASSDAFHAMFDGGYREKDARDIEIPNIRWEV FELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIGQDISLENVSSMYELSEAFHAISLRKTCILYILEHFD KLSARPGHSHLIQLIIPEIRNYFVKALTKANPNIQHI 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite 1 25 25 -
PANTHER 21 669 649 0.0
PANTHER 21 669 649 0.0
Gene3D 42 136 95 3.7E-7
SMART 74 154 81 11.0
Gene3D 137 239 103 4.4E-29
SUPERFAMILY 141 478 338 3.52E-54
SMART 156 196 41 2.9E-7
Pfam 163 195 33 2.5E-7
ProSiteProfiles 167 202 36 12.267
Pfam 198 237 40 3.7E-7
SMART 198 238 41 4.6E-6
ProSiteProfiles 209 251 43 9.537
SMART 240 280 41 1.5
Gene3D 240 395 156 1.4E-27
SMART 282 322 41 0.0014
Pfam 282 321 40 2.7E-5
ProSiteProfiles 293 335 43 10.867
SMART 323 363 41 5.4
ProSiteProfiles 334 376 43 9.887
Gene3D 396 478 83 2.4E-5
SMART 438 478 41 22.0
CDD 497 612 116 2.18511E-78
Gene3D 501 645 145 1.1E-42
SUPERFAMILY 502 603 102 1.61E-29
Pfam 503 603 101 1.6E-25
ProSiteProfiles 510 577 68 18.307
SMART 510 607 98 8.2E-24
CDD 606 669 64 5.77221E-27

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0457000.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…