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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0457800 |
| Transcript ID | LotjaGi2g1v0457800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Homeobox-leucine zipper family protein; TAIR: AT4G21750.1 Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein; Swiss-Prot: sp|Q8RWU4|ATML1_ARATH Homeobox-leucine zipper protein MERISTEM L1; TrEMBL-Plants: tr|E0CVM0|E0CVM0_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi2g1v0457800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:95137552..95141292) extracted from Lotus japonicus Gifu genome v1.2.
CAGACTGCAACAATGTTTAACTCCAACGTGTTTGATCCTCACCATCCCATGCTTGATATGTCACCCCCCAACAATTCCTC TGGGAGTGGTCAGGTAAGGCGCAGAGAAGAGGATGACATTGATGCCAAATCTGGTGGCACCGGCATGGAGACCATTGACG TTCCTTTCACTGATGAGCAACAAGACTCCAACCAGCGACCCCGGAAGAAGGGCTACCACCGCCACACCACGCACCAGATT CACCAAATGGAATTGTAAGAATCATAATTTTTCTAATGCAAAACTTTAACTCATAACATATATCATGCTTGTTTGCTTAT GTAATTTTCTGATTCAATTTTGTGTTTCTTAAACTTGGCTTTATCAGGTTCTACAAGCATTGTCCTCACCCGGATGACAA GCAAAGAAAAGAGCTGAGCGGCGAGCTGGGGTTAGCGCCTTTGCAAATCAAGTTTTGGTTCCAGAACAAGCGCACTCAGA TGAAGGTAAACAAAATTAAAGAGCCTATCTATATTCAATTCCTTTAAATTATTTGTATTCAAGTTGCATCGGACCATTAA TTAATGCTTCTGGTTATACAGGCTCAAAGTGAACGCCAGGAGAATGCGCATTTGAAGGCTGAGAATGAAAAACTCCTCGT TGAGAACATGCGGTACAAGGAGGCCTTTAGTAAGGCTACATGTACCACCTGTGGAGGCCCTGCTTCGCCTGGCGAAATGT CCTATGACGAGCAGTTTATGAAGTTGGAGAATGCTAGATTGAGAGAAGAGGTACCACCAATAACCATAACACAAGATTTA ACTGTTAATTATTTAATAGCAATACTTTCATTCCCTATGCTAATAAAAATTTCTCATATTTCAGATTGAGAGGATTTCAG GAATTGTGGCAAAATATGCTGGGAAGTCCACAACATCCTACTCCAGCCTTTTATCTCAAAATTACAATCAAATGCCTTCT TCTTCGCGAGCATTTGATCTCGGAGTAGGAAACTATGGTGGTGATGGCAATGACCTTCTTAGGTCATCACTCCCCCCAAT TCTTGCTGATGCTGACAAACCTATCATTGTGGAGGTTGCTGTTGCTGCAATGGAGGAGCTAGTAAGGTTAGCTCGTGCTG GACACCCTTTATGGGTCCTCAGCAACAACCACAATGCTGAGATACTGAATGAAGAGGAATACCTCAGGGTGTTTCCTAGG GGTACAGGTTCCAAACCCTTCGGCGTAAGGTCTGAATCTTCAAGAGATTCAGCTATTATTATGATGAACCCAGCCAACTT AGTTGATATGTTAATGAACGTGGTGAGTGTCAATGTCCTTAAAAACTTTTATGTGTTGTTGTTATAATTTTCCTAGTGAG GCATTTGAAATAGATATATAATTTGTCTTTGGACTGTTTGCAGAACCAATGGGCAAGTTTCTTTTGCCACATTGTGTCCA AGGCATCAACACTGGAAGTGCTCTCAACAGGCGTGGCAGGAAACTACAATGGCGCATTACAAGTGGTACTCAATTTTTCC CCTTTCTCCTCTCAAGGAAATTAATTTGGTCTAAATGTATATGAGTGTTACCAAGCTTACAACAAAACAAGCGAGTCAAA ATTGCTTGAAAAATTTTGTATTCCAACCATTAGCTGGATAGTAGTGTTTACATAGTACTAATTATAATGTTAATATGTTC ACATCAATAATATATAGATGTGTAATATTAATATGCATTTCATCTATCTAACAATTGAAGTTTTTTGTTTCAGATTCAAG CTGAGTTCCAGCTGCCTACACCACTTGTTTCTACTCGTGAGAACTATTTGGTGAGATACTGTAAGCAGCATCCAGATGGG ATATGGGCTGTGGTTGATGTGTCCTTGGATAATCTGCGACCCAGTACAATATCAAGAAACCGAAGAAGGCCCTCTGGTTG TGTGATTCAACCATTGCCAAGTGGCTACTCCAAGGTGACATTGTCCATCAATTGAGCTTCTATTTAATGTCCATATTGTT CATAACCTTCTTTTAATTTCCCTTTGAAACTAAACCAAAATCACTCCAACTCAATTAGTTATCTTTTAATGTTTCACAGA TTACTTGGGTAGAGCATGTAGAGGTTGATGATAGAGCGGTGAATAGCATATATAGGCCTCTAGTTGGGTCTGGCCTTCCC TTTGGAGCTAAACGCTGGGTAGCTACATTAGATAGACAGTGTGAACGTCTTGCTAGTTCAATGGCCAGCATCATACCAGC AGGGGACATTTGTCGTATGTGGCATCGATCTCTACTTTCTTATCCTTTTTTTTTTGTTCTAATTATCCCTTTCCTACTTG AAGAATCATCTTAAAATGTTATCTATCATATACACTCAAACTCAAACATATAGATGATTAATTAAGACTGAATTTCTGAT CCTTATATACAGCGGTAACCGATGCTGATGGAAGAAAGAGTATTCTGAATCTGGCAGAGAAAATGGTGATGGGCTATTGT ACTGGTGTTGGTGCTTCATCTACTTGGTCAACGCTAGTCGGAAGCAATGATATAAGGGTGATGACCCGAAATGGTGTGGA TGAACCGGGCAGAGACCCCAGTCTTGTGCTGAGTGCTGCAACTTCCTTATGGCTTCCAGTCCCTCCAAAGAGGGTTTTTG ATTTCCTTCGTGATGCAAACAGTAGGAGTCAGGTATGTATGTTTGTATCTATGTATACAGGAATATGAATTTGTACACTG ACTAATAAAAAGAATCAGTACTGAGGAATTTGAATTTATACATGAAGTGCTTTCATTGTTGAAGCTTACACATTGAATTG CATTGACAGTGGGATATTCTCTCCAATGGGGGTCTAACTGAAGAACTGGTACACATAGCAAATGGGCGTAACCCTGGCAA CTATGTCTCTATACTTCGTAACAATGTAAGTTATATATAGGTAGTAGTAGTAGTAGTAGTACAAAAACAATTATCATATA CATGTTATAACTTTGTGTTTTGGATGCATGCAGAATGCTGAAACCACCAACATGGTGGTACTTCAAGAAAGTTGCACTGA TTCAACTGGGTCATATGTTATTTATGCACCTGTGGATGTTAGTGCCATGAATTTAGTTCTGACCGGTGGGGATCCAAGTT ATGTTGCCCTGCTACCCTCAGGCTTTGCAATTCTTCCTGATGGGCCACCTAGAGTGAATAATGAAGGACTCATACTTGAA GTTGGAGGTGGAGGTACTTTACTCACAGTTGCATTTCAGATCTTGGCTAATTCAGCCCCGGATGCAAAGCTAACTATTAC TTCAGTGCCGACTGTTCGTGATTTGATTAAGTGCACAATTGAAAGGATCAGTTCTGCCGTGATGGATCCAATCCCCTAAG ATGCATGTGGTAAGTAATTTAATTGCATTACACAGCACTCAACACAACACTATGATGATTAGAAATTAGTACTGAAATTG ATTTGCATGTTCTGATATGTAGGGTGACAAGCTTGGAGTGGTGCAACCTTAGTTTTCAACAAAATGGAGAACAAGTCAAT AAACGCACCTTGGAGAATCTCTAGCTCTTAGGTTCGAGTATTGACTTTCACTATTGAAGACCAAAGGAGTTCCGCCCGGG CTGCACAATGTTTCATTTTTTGCTTTGAATAAACTGCTGTTTCAGCATTTGGAATTTTCACCACAATTTTGTAAACTTGC CTCAAGTGGTGTAATAAATAATTATCGAATTTTGCGGTTATATTTATATATGGTTATGGTT
CDS sequence (LotjaGi2g1v0457800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTAACTCCAACGTGTTTGATCCTCACCATCCCATGCTTGATATGTCACCCCCCAACAATTCCTCTGGGAGTGGTCA GGTAAGGCGCAGAGAAGAGGATGACATTGATGCCAAATCTGGTGGCACCGGCATGGAGACCATTGACGTTCCTTTCACTG ATGAGCAACAAGACTCCAACCAGCGACCCCGGAAGAAGGGCTACCACCGCCACACCACGCACCAGATTCACCAAATGGAA TTGTTCTACAAGCATTGTCCTCACCCGGATGACAAGCAAAGAAAAGAGCTGAGCGGCGAGCTGGGGTTAGCGCCTTTGCA AATCAAGTTTTGGTTCCAGAACAAGCGCACTCAGATGAAGGCTCAAAGTGAACGCCAGGAGAATGCGCATTTGAAGGCTG AGAATGAAAAACTCCTCGTTGAGAACATGCGGTACAAGGAGGCCTTTAGTAAGGCTACATGTACCACCTGTGGAGGCCCT GCTTCGCCTGGCGAAATGTCCTATGACGAGCAGTTTATGAAGTTGGAGAATGCTAGATTGAGAGAAGAGATTGAGAGGAT TTCAGGAATTGTGGCAAAATATGCTGGGAAGTCCACAACATCCTACTCCAGCCTTTTATCTCAAAATTACAATCAAATGC CTTCTTCTTCGCGAGCATTTGATCTCGGAGTAGGAAACTATGGTGGTGATGGCAATGACCTTCTTAGGTCATCACTCCCC CCAATTCTTGCTGATGCTGACAAACCTATCATTGTGGAGGTTGCTGTTGCTGCAATGGAGGAGCTAGTAAGGTTAGCTCG TGCTGGACACCCTTTATGGGTCCTCAGCAACAACCACAATGCTGAGATACTGAATGAAGAGGAATACCTCAGGGTGTTTC CTAGGGGTACAGGTTCCAAACCCTTCGGCGTAAGGTCTGAATCTTCAAGAGATTCAGCTATTATTATGATGAACCCAGCC AACTTAGTTGATATGTTAATGAACGTGAACCAATGGGCAAGTTTCTTTTGCCACATTGTGTCCAAGGCATCAACACTGGA AGTGCTCTCAACAGGCGTGGCAGGAAACTACAATGGCGCATTACAAGTGATTCAAGCTGAGTTCCAGCTGCCTACACCAC TTGTTTCTACTCGTGAGAACTATTTGGTGAGATACTGTAAGCAGCATCCAGATGGGATATGGGCTGTGGTTGATGTGTCC TTGGATAATCTGCGACCCAGTACAATATCAAGAAACCGAAGAAGGCCCTCTGGTTGTGTGATTCAACCATTGCCAAGTGG CTACTCCAAGATTACTTGGGTAGAGCATGTAGAGGTTGATGATAGAGCGGTGAATAGCATATATAGGCCTCTAGTTGGGT CTGGCCTTCCCTTTGGAGCTAAACGCTGGGTAGCTACATTAGATAGACAGTGTGAACGTCTTGCTAGTTCAATGGCCAGC ATCATACCAGCAGGGGACATTTGTCCGGTAACCGATGCTGATGGAAGAAAGAGTATTCTGAATCTGGCAGAGAAAATGGT GATGGGCTATTGTACTGGTGTTGGTGCTTCATCTACTTGGTCAACGCTAGTCGGAAGCAATGATATAAGGGTGATGACCC GAAATGGTGTGGATGAACCGGGCAGAGACCCCAGTCTTGTGCTGAGTGCTGCAACTTCCTTATGGCTTCCAGTCCCTCCA AAGAGGGTTTTTGATTTCCTTCGTGATGCAAACAGTAGGAGTCAGTGGGATATTCTCTCCAATGGGGGTCTAACTGAAGA ACTGGTACACATAGCAAATGGGCGTAACCCTGGCAACTATGTCTCTATACTTCGTAACAATAATGCTGAAACCACCAACA TGGTGGTACTTCAAGAAAGTTGCACTGATTCAACTGGGTCATATGTTATTTATGCACCTGTGGATGTTAGTGCCATGAAT TTAGTTCTGACCGGTGGGGATCCAAGTTATGTTGCCCTGCTACCCTCAGGCTTTGCAATTCTTCCTGATGGGCCACCTAG AGTGAATAATGAAGGACTCATACTTGAAGTTGGAGGTGGAGGTACTTTACTCACAGTTGCATTTCAGATCTTGGCTAATT CAGCCCCGGATGCAAAGCTAACTATTACTTCAGTGCCGACTGTTCGTGATTTGATTAAGTGCACAATTGAAAGGATCAGT TCTGCCGTGATGGATCCAATCCCCTAA
Protein sequence (LotjaGi2g1v0457800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFNSNVFDPHHPMLDMSPPNNSSGSGQVRRREEDDIDAKSGGTGMETIDVPFTDEQQDSNQRPRKKGYHRHTTHQIHQME LFYKHCPHPDDKQRKELSGELGLAPLQIKFWFQNKRTQMKAQSERQENAHLKAENEKLLVENMRYKEAFSKATCTTCGGP ASPGEMSYDEQFMKLENARLREEIERISGIVAKYAGKSTTSYSSLLSQNYNQMPSSSRAFDLGVGNYGGDGNDLLRSSLP PILADADKPIIVEVAVAAMEELVRLARAGHPLWVLSNNHNAEILNEEEYLRVFPRGTGSKPFGVRSESSRDSAIIMMNPA NLVDMLMNVNQWASFFCHIVSKASTLEVLSTGVAGNYNGALQVIQAEFQLPTPLVSTRENYLVRYCKQHPDGIWAVVDVS LDNLRPSTISRNRRRPSGCVIQPLPSGYSKITWVEHVEVDDRAVNSIYRPLVGSGLPFGAKRWVATLDRQCERLASSMAS IIPAGDICPVTDADGRKSILNLAEKMVMGYCTGVGASSTWSTLVGSNDIRVMTRNGVDEPGRDPSLVLSAATSLWLPVPP KRVFDFLRDANSRSQWDILSNGGLTEELVHIANGRNPGNYVSILRNNNAETTNMVVLQESCTDSTGSYVIYAPVDVSAMN LVLTGGDPSYVALLPSGFAILPDGPPRVNNEGLILEVGGGGTLLTVAFQILANSAPDAKLTITSVPTVRDLIKCTIERIS SAVMDPIP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 72 | 72 | - | – | |
| PANTHER | 33 | 724 | 692 | 0.0 | – | |
| PANTHER | 33 | 724 | 692 | 0.0 | ||
| SUPERFAMILY | 50 | 122 | 73 | 1.42E-16 | ||
| Gene3D | 57 | 125 | 69 | 1.4E-16 | – | |
| ProSiteProfiles | 62 | 122 | 61 | 14.738 | ||
| SMART | 64 | 126 | 63 | 4.2E-16 | ||
| CDD | 65 | 123 | 59 | 2.3613E-15 | ||
| Pfam | 65 | 120 | 56 | 7.8E-15 | ||
| ProSitePatterns | 97 | 120 | 24 | - | ||
| Coils | 114 | 148 | 35 | - | – | |
| ProSiteProfiles | 244 | 476 | 233 | 45.064 | ||
| SUPERFAMILY | 245 | 475 | 231 | 1.69E-37 | – | |
| CDD | 248 | 472 | 225 | 5.81157E-115 | – | |
| SMART | 253 | 473 | 221 | 1.5E-64 | ||
| Pfam | 253 | 473 | 221 | 3.7E-49 | ||
| Gene3D | 308 | 477 | 170 | 4.0E-6 | ||
| SUPERFAMILY | 502 | 719 | 218 | 1.14E-20 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Lipid binding | Interacting selectively and non-covalently with a lipid. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi2g1v0457800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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