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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0458400 |
| Transcript ID | LotjaGi2g1v0458400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING zinc finger protein, putative; TAIR: AT1G01350.1 Zinc finger (CCCH-type/C3HC4-type RING finger) family protein; Swiss-Prot: sp|Q8GX84|C3H1_ARATH Zinc finger CCCH domain-containing protein 1; TrEMBL-Plants: tr|A0A151SCN7|A0A151SCN7_CAJCA Zinc finger CCCH domain-containing protein 1; Found in the gene: LotjaGi2g1v0458400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:95205486..95207719) extracted from Lotus japonicus Gifu genome v1.2.
TATTTTTTTAGAACATTTTCTAATCCAATTTATCTATTTTTTATATATTTTTTCACCCAACTCGCGAGGCAGCCCAACAA CCCGCGAGCTCGTTGACCCCGTTTTTAACCCAACCCATACGGGCTGACCCATATGGGCCGGAGTGGCCCGTATTGACAGG TCTAGGGTTGAGGTTGAAAAACATTAATCCAAAAACTGAATCAGAAATCACAGGCGCTTGCTAATCTGTCTCTCTTGCGG CGAAATTAAATCGAACGAAAACAGTTAGTGAGTGTCTCTTGTTCTTCTCTCGCCTTTTAGGGTTTTTCTTTCAATTACGA TCTTCTTTTGCTGTTCGTTCGAGGAAATCCTTGAACTGATTTCTGATTTTATGCAACTTGGTTATTTTCTTTTTAAACTT TAGTCTTGTTTCTCATTTTGATCTGGATTTGTAATTGTCACAGCTTGTACAAATCAAATTCTAAGCATGGGTGATTCTGA TGAACAAGGTATGTCTGCTTATTGCAATTTTATGTGTGAATTGTCATCTGTTCAACTTTTTAGTTTGCTTCTGTTCTCTC TATAAGTATTTCTGCTTATTTTTCCTTGCTTTCTTTTCAGTGTGTAGTTTCTTCAGAAAACCTGTCAATAAGAAGAATAT AAGGAAACGAACTACTGATCATCAAGAAGATGATGAGGATGACACAAACACTGAAACCTCTTTATTACACACCCAGAGAA AGACCTTCAAGCCAGACAATAAGTTGTACTTTTCCACTGGCTCTACAAAACCCTCTACAGCTGCAGAACCAACTCAAGAA TTTCAGTTCGAGTCTTCAAAAGAGATTCAAGTTCAACATGATAGCAAAGCAACCGCAACTCTAGAGACTGAGACTGACTT TTCCACAGATGCCCGAGCCATACGTGAAAGGGCTCTCAAGCAAGCAGCCACTAGTCTCAAGGGGAAAGCCAAAACTTCTG AGGATGATAAGTTGTACAAGGGAATCAACAATTACAAAGACTACAAGGCTGGCTTCCGTAGAGAGCAAACAATTGCTAGT GAAAAAGCTGGCGGGGCACATGGTCCTCTCAGGGCTTCAGCTCATATAAGAGTTTCAGCTAGATTTGATTATCAGCCTGA CATATGTAAGGATTACAAGGAAACTGGTTACTGTGGGTATGGTGATTCCTGCAAGTTTATGCATGATCGAGGGGACTACA AGTCTGGATGGCAATTGGAGAAAGACTGGGATGATGCTGAGAAAGCAAGGAAGATGAGATTGGCTGCGGGTGAGGATGCA GTTGAGGAGGGTGCTAATGTCACGGATGAAGAGGACGATGATTCATTACCATTTGCGTGTTTCATCTGTAGACAGCCATT TGTGGATCCTGTTGTAACCAAGTGCAAGCACTACTTCTGCGAGCATTGTGCATTGAAGGTATACCCTTACAGCTGTTGCA ATTAGGTTTCAATTTTTAACAGATTCATGTTATCAAGTGTTTTGAGCAAGTGACTCAATATTTTTAGTTCAGATTTTTTT GTTACTCATTCAAGTTAGATTACATTCTGTTGCTGTTGTTATATGATATGTGACTGATTAATTAGTCTGGTGGATTAAAT GGTTCAGCTCTGTAGGAATTGTAGAATTACCAGACATGTAATTAGGGGATACTATATGTTATCTTCTAATATTTTTTTCC TTGATGCAGACCATTAGACTTGTGATTTGTCTAATGTAGCAGTGCTCAACTTCTATCTATTATATGATGTCTAACTTTCT GTTCGTTTTATTTGCAGCATCACGCAAAGAATAAAAAGTGTTTTGTCTGCAACCAGCCAACACTCGGCACTTTTAATGTT GCTCAGGAGATACGCAAGAAGATGGCTGAGGATAATAAATAATCTCACTCAACAGGATCTATGATCTCTCTGCTTAGAGG AAGTTATCTTTCTCTTTCCATTTTAATTCTGTGTTGAAGAGTGATGCTGGGAACTATGGAAAGAGTTGAAAACATCCGGA GGTTAAAACGGTGGGGTTAGGTCTTATTCATATTGCTTTATTTTCTTGACTAATAGATCCCAGAATATCTAATAGTGATA TGTATCACATGTTGATAGCACACACTGGTTCTTTTTGCAGTGTTACACAGTTTGATACTAATTTAATTTCCAGTTACAGA TTTTTCTTAACTGAGGTACAAGATAACAAAACATTCTTTAATATTGTGGGTCATCCATCATTAAGTCCAGTGTT
CDS sequence (LotjaGi2g1v0458400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGATTCTGATGAACAAGTGTGTAGTTTCTTCAGAAAACCTGTCAATAAGAAGAATATAAGGAAACGAACTACTGA TCATCAAGAAGATGATGAGGATGACACAAACACTGAAACCTCTTTATTACACACCCAGAGAAAGACCTTCAAGCCAGACA ATAAGTTGTACTTTTCCACTGGCTCTACAAAACCCTCTACAGCTGCAGAACCAACTCAAGAATTTCAGTTCGAGTCTTCA AAAGAGATTCAAGTTCAACATGATAGCAAAGCAACCGCAACTCTAGAGACTGAGACTGACTTTTCCACAGATGCCCGAGC CATACGTGAAAGGGCTCTCAAGCAAGCAGCCACTAGTCTCAAGGGGAAAGCCAAAACTTCTGAGGATGATAAGTTGTACA AGGGAATCAACAATTACAAAGACTACAAGGCTGGCTTCCGTAGAGAGCAAACAATTGCTAGTGAAAAAGCTGGCGGGGCA CATGGTCCTCTCAGGGCTTCAGCTCATATAAGAGTTTCAGCTAGATTTGATTATCAGCCTGACATATGTAAGGATTACAA GGAAACTGGTTACTGTGGGTATGGTGATTCCTGCAAGTTTATGCATGATCGAGGGGACTACAAGTCTGGATGGCAATTGG AGAAAGACTGGGATGATGCTGAGAAAGCAAGGAAGATGAGATTGGCTGCGGGTGAGGATGCAGTTGAGGAGGGTGCTAAT GTCACGGATGAAGAGGACGATGATTCATTACCATTTGCGTGTTTCATCTGTAGACAGCCATTTGTGGATCCTGTTGTAAC CAAGTGCAAGCACTACTTCTGCGAGCATTGTGCATTGAAGCATCACGCAAAGAATAAAAAGTGTTTTGTCTGCAACCAGC CAACACTCGGCACTTTTAATGTTGCTCAGGAGATACGCAAGAAGATGGCTGAGGATAATAAATAA
Protein sequence (LotjaGi2g1v0458400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGDSDEQVCSFFRKPVNKKNIRKRTTDHQEDDEDDTNTETSLLHTQRKTFKPDNKLYFSTGSTKPSTAAEPTQEFQFESS KEIQVQHDSKATATLETETDFSTDARAIRERALKQAATSLKGKAKTSEDDKLYKGINNYKDYKAGFRREQTIASEKAGGA HGPLRASAHIRVSARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQLEKDWDDAEKARKMRLAAGEDAVEEGAN VTDEEDDDSLPFACFICRQPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVCNQPTLGTFNVAQEIRKKMAEDNK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 313 | 313 | 2.9E-139 | ||
| MobiDBLite | 1 | 44 | 44 | - | – | |
| PANTHER | 1 | 313 | 313 | 2.9E-139 | – | |
| MobiDBLite | 53 | 72 | 20 | - | – | |
| Gene3D | 176 | 209 | 34 | 2.7E-6 | – | |
| SUPERFAMILY | 176 | 208 | 33 | 1.83E-9 | ||
| ProSiteProfiles | 177 | 205 | 29 | 14.878 | ||
| SMART | 177 | 204 | 28 | 1.1E-7 | ||
| Pfam | 178 | 203 | 26 | 4.7E-10 | ||
| CDD | 252 | 292 | 41 | 5.42789E-25 | – | |
| Gene3D | 252 | 311 | 60 | 3.3E-15 | ||
| Pfam | 253 | 294 | 42 | 1.6E-8 | – | |
| SUPERFAMILY | 253 | 296 | 44 | 4.62E-13 | – | |
| ProSiteProfiles | 254 | 292 | 39 | 10.409 | ||
| SMART | 254 | 291 | 38 | 1.8E-4 | ||
| ProSitePatterns | 269 | 278 | 10 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of LotjaGi2g1v0458400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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