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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0001800 |
| Transcript ID | LotjaGi3g1v0001800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 4-coumarate:CoA ligase-like protein; TAIR: AT3G21240.1 4-coumarate:CoA ligase 2; Swiss-Prot: sp|O24145|4CL1_TOBAC 4-coumarate--CoA ligase 1; TrEMBL-Plants: tr|G7ZYW6|G7ZYW6_MEDTR 4-coumarate:CoA ligase-like protein; Found in the gene: LotjaGi3g1v0001800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:254620..260171) extracted from Lotus japonicus Gifu genome v1.2.
GTCCTTATACCATATTAAGGAGAACGATTAACTAATAGGTACAAAATGGGAGAGTGAGTTTTCTATAAAACATCATACAT AATGTAGATATATGTTCACTTGGCTTATAACCAAATCTCGATCTCCTAATTCACTACATAAACAGATTACCAACCTGTGG CAGGCAGGCAAACACATAACATATGATAATTTCTCATCCCTGGCCCTCAACATTCATTTAATCCCCAATTTGCCCTTCAC CAACTCCCATGGTAACCGATCCTTTATTACAAACTAACAACCAAGGCTCAAACGTAAGTACATATATAACTCACTCATCA CACACACATTCAGATTCAGGTTACTTCCATAAACAACTTGTTGTTGTTTTTGTCTCACCTCTCACCTCTTAAGTCTTACC TGCTCACCAATCCAACCCAACAATAACTTCATTTCTTCAATTCAATGGCAATTCTTGAGAACAAGAAGAACGAGGAGGAA GAGCAATTCATTTTCAGGTCCAAGCTCCCTGACATCTACATCCCCAAACACCTTCCTCTCCACTCTTACTGCTTCCAAAA TCTCCCTGACTTTGCCTCACGACCCTGCCTCATCAACGCCCCCACCGGCGACGTCTACACCTACCACGACGTCGACCTCG CCGCCCGGAGAACCGCCTCCGGCCTCCACAAACTCTGCAACATCCAAAAAGGAGACGTCATCATGATCCTCCTCCCCAAC TCCCCTGAATTCGTCTTCTCCTTCCTCGCCGCATCTCACCTCGGCGCCATGGCCACCGCCGCAAATCCCTTCTTCACCGC CGCGGAAATCGCCAAGCAAGCCAAAGCCTCCAACACCAAGCTCCTCATCACCCAATTTTCCTACCACGACAAGGTCAAGG AATTGCCGGATCACAACGTCAAGCTCGTGTTCATCGACGACGATCGTAACGGTAACCGCCATAACCACCTGCATTTCTCA CAGCTGATGGAAGCTGAGAGTGAATTGGAATTGGAACAGATCGATCCCGACGATGTGGTGGCGCTGCCGTATTCATCAGG GACAACCGGTCTTCCGAAAGGGGTGATGTTAACGCACAAAGGATTGGTAACAAGCATTGCACAGCAAGTAGATGGGGAGA ATCCGAACCTGTTCTACCACTGTGAAGATGTGATTCTTTGTGTTCTTCCTCTGTTTCACATTTACTCTCTGAACTCTGTT TTGCTGTGCGGGCTGAGAGCGAAGGCGGCGATATTGCTGATGCCGAAATTCGAAATCAATGCGTTGCTGAGTTTGGTTGA GAAACACAGGATCACGGTGGCGCCGGTGGTGCCGCCGATTGTTCTGGCGATTGCGAAGTCGCCGGAGCTGAATAAACATG ACTTGTCTTCAATTAGGATATTGAAATCCGGTGGAGCACCGCTGGGTAAAGAAGTCGAACAAGCTCTCACCGCCAAATTC CCCAACGCCAAATTCGGTCAGGTACCTACCATTACCAATACGACCTACAATTATTAATTTTATTCTCAACTCAAGCATTT CATTTCTTTATTTCCTAACTTGTCTCACCAAAAATTTAACTATACATACATGCCTCATGCATTTTCAATGATAAAAATTG ACTTTGATGCACCGTGTGGAGTGGAATCGTGACGCAAGCAAAGTGGGTTGCTTATCTAGTTTAGGATTAAGGACACAAGT TACTACATACTAAATTCAAGATAAAAGAAAATCAAAATCTACTTTTCGACTCAATTAATATTTAAATAGTATATACTTAT GCGTGTGCTCCACATAACTTGTGGACATTTGCTAATAACTTTTGTCTCCATGTTACTTAGGGCCCGTTTTGTGCGACGTA TAGTATAAGGCCTGATAGTATAAGACCTGATAGTATTAGGCCGGATAGTATAAGCCCTGATAACTTTCTTATACTATCCA ACGTTTGGACATACTCTGTATAATTTACCATATCGTTTAAATTAATGCAATTTTATGTTTATTGAAGTATTGAATAATGA TATATAATAAAAATCAAATATGGAGGTGATTATAACGGTGGTGACGGTGGTGATGGAAGTAGTGGTAGGTTGGTGGTGGT GGTGGCAATGGTGGTAGGTTGGTGTTGGTGGCGGTGGTGGTGACAGTGGAGATAGGTTGGTGGTGGTGGTGGCATCGATG GTGGTTGTGGTGGTGACAATGATAGGGTGGTGGTGGTAAGGCGGTGGCGGCTATAGTGGAGGGTGGAGGCAATGGTGGTG GTGTTGGCGATAGAGTGGTGACGACGATTAGGGTGGTGGTGGCAATAGGGTGGTGGTTGTGGTGGCGGTAGGGCGGCGGC GGTGGTGGTGGCGGTGGTGGCAACGATGGTGGTTGTGGTGTTGGCGACGATAGGGTGTGGTGGTGGTGGTAAGGCGGTGG CGGCTTAGTAGGGTGGCGGCGACGGTGGAGGGTGGAGGCAATGGTGGTGGTGGTGGCGATAGGGTGGTGGTTGTGGTGTC TGTGGTGGCAATAGAGTGGTGGCAGCGATTATGGTGGTGGTGGCGATAGGGTTGTGGTGGCGGCGATTATGGTGGTGGTG GCGGTAGAGCGGCGGTGGTGGCAACACCAGTGGTGGCGGCGGCGGCGGTGATCAGGTGGTGGCGGTGGTGGTGCCAATGG TGGTGTAAGTTGGCAGCAATAGAGGGTGGTGGTGATGGTGACTTATACGTCACAACCTTATCATGCCTTATCCATCACTC ACATGATGGATTAAATAATACGTCATTTTAACGTATAAGGGGACTTTGATGGATAAGCTTATACAATACAATGTCATCAC CAAACAATGAATAAACTCATAATGTATTGTATAAGCTTATACTATCATGCCTAATACGGCGTGCTATTATACCAATCTTA ATATGATATGAGTATGACCATTTGATAGAGAATAACACACAAAATAAAAACCATTTCTCTTTATTTTTATAAAGAATAGA GAGTATAATGAAAAAATCTCAATTGGTAGAATGAAAAAAAAAATCACCCAAAAAATAATTTTTCTCTTTATTTTTCTTTT TCTTTTTCTTTTTTCTGTTACATCACATCATATATTACATGTGTAACTTATTTCTTTTATCTTTCTATCTCACTCTAAGC ATCTACATCAAAATAGTATACTTAACATTATTAGTACTATTTTTTTCTTCTACATTGAAAAGTAACACAAGAAACTAAAG TAAATCATTACAAACATGCTCAATAAAATTATAAGAGGAGATTTCCAAATGCGTAAATGAAAGTCATCTCTAAAAATTTG TCTAATCAACATATTTCCAAGTTCCAACTATGTTGCTCTTTTATAAATATGAGCAAGCATAATATGCCAAATCCAACTCC AGTCCCGGTGCTCATGATACTTAAATTAATATTCTTTAGCCAAAATTTTTGGACGTCAACATCATTAATAACTAGCACCA CAGTATGTACAATTTGATTCGAATTTCGAAGCAATCTTCTTATACTAAGTTCCCAAATATGGCGCAATCCCTCCTCCATA GCAAGTAACACAACATGAAGAGGATTGTCATCGATCACTAACACTAAAAAACTGAAAGCCAACATCCATCATGATAAAAT GAGTTAACATGATTAAAATAAATGTAGTGGAAATTATCTCACCTCTTTACTTGAACTTTCATAAATAAAGTTACTTGTTT ACTTATAGTGAAGTTATTTAATCCTTTAAAGTTAAACAAGTCACAAGAAGCAATAAAAAATCTAATGTATTTCCTTGAAA ATTAAAGTTTGATATATAGATGGATGATTGTGTTGAATACAGGGATATGGAATGACAGAGGCAGGGCCAGTGTTAACAAT GTGCTTAGCATTTGCTAAGGAACCAATTGATGTAAAACCAGGTGCATGCGGAACCGTTGTAAGGAATGCAGAGATGAAGA TTGTGGATCCTGAAACTGGCAATTATTTATCTCGAAACCAGTCTGGTGAAATTTGCATAAGAGGTGACCAGATCATGAAA GGTTATCTAAATGATCCAGAGGCTACGGAGAGAACGATAGACAAAGGGGGTTGGTTACATACAGGTGACATTGGTTATAT TGACGATGATGATGAGTTGTTCATCGTTGATAGGTTGAAGGAATTGATCAAATACAAAGGATTTCAGGTTGCTCCAGCTG AACTTGAAGCCCTTCTTCTTTCTCATCCCAAAATCTCTGATGTTGCTGTTGTCCCGTAAGTGCATATATGTGGCATCTTA ATTGAGTCGATTGTGAAATTGGTTGTGTTGAGCATTGTCAAGTTCGTCCCTACAAGAGGAAAATCTCTCGCAGCTTCTCA TAGTGTAAAATGTCATCAAGCAATCAGGAACCGCATGAGTATTTCCTAAATTAAGGGACGAACTTGTCAGTGTCCAACAC TTTCAGGGACCAATTTCACCAATCACTTATCTTAATCTCACTACATTCATTTTACAATTATATAATTGAACAAATAATTA TTTGTCCTAACGTAAAATTCAGGATGAAGGATGAAGCAGCTGGAGAGGTACCAGTTGCATTTGTTGTGAGATCAAATGGT CACACCGACATAAACGAGGATGAAATTAAGCAGTTTATCTCCAAACAGGTTTTTCCTCCCTTCTAGTTTTACAATTTACT AAACACATGTGTTTAATTTACTGAAATAGTACTATTAGATTAGATACATTCTCACACGTCCCTCTCCCACTTCCCACCTA ATTTTGTAATTGAAGGTTTTCTCTTTCAGATATAAGTGTGTATTTATGATGCATGTTATCATTGTCTTCTTGGCTATGTA GACAGATCGAATATAATAAATGAGATGAGTTTGCTATTGCACAGGTGGTATTTTACAAAAGAATAAACAGAGTATTCTTC ATTGATGCAATTCCCAAGTCACCATCAGGCAAAATCTTGCGTAAGAATCTGAGATCAAAGTTAGTAGCTGGTGTTCCAAT TTGAAATCCTCTATTTAATATCGATCCATGTTACATGATGTTTATCATTATCATGCGAAGCTTGCACCAACTTCAACATA CTACAATGGGAGATGCTTGGAGCTTGATCTCTTTAATTCTCCTATATTCTTACATAGTTTATCATGTATAATTCACAAGT GTGTTTTTCTTATTTTGTTTTAGGACAATATTTTGTAAAAAATTGATTAAATAAACAAATTTCATATTCTATATTGAAAG TTGAGGTCTCTTATAGAGCAATTCAACTTCTTAAAGACGTCTCGTAACCAGTTTGTGAGTTTGCCTCGTCAACGAGCACT CTTTTTACGTCACAGTTCACGATTGTGGCTTTTTCACGATGAGATTATTGTGTTCTCCATTGATGTCTTTATTGTCATCC TTGAGGCAAATACGCTCATTTGTGGTGTTTTAGTGCCTATCATGGAACTTGTAATATTTGTTTCTTGTTGGACTCTTCTT TTTAAATGGGATGATCTATAAAATATTGTAGAGTTTGAATTGCATGACATCTCGGTAGATACGCATGAGAAATGAGCGTT GAGGGGTTGCATAATCATTATAGATATCCCCC
CDS sequence (LotjaGi3g1v0001800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAATTCTTGAGAACAAGAAGAACGAGGAGGAAGAGCAATTCATTTTCAGGTCCAAGCTCCCTGACATCTACATCCC CAAACACCTTCCTCTCCACTCTTACTGCTTCCAAAATCTCCCTGACTTTGCCTCACGACCCTGCCTCATCAACGCCCCCA CCGGCGACGTCTACACCTACCACGACGTCGACCTCGCCGCCCGGAGAACCGCCTCCGGCCTCCACAAACTCTGCAACATC CAAAAAGGAGACGTCATCATGATCCTCCTCCCCAACTCCCCTGAATTCGTCTTCTCCTTCCTCGCCGCATCTCACCTCGG CGCCATGGCCACCGCCGCAAATCCCTTCTTCACCGCCGCGGAAATCGCCAAGCAAGCCAAAGCCTCCAACACCAAGCTCC TCATCACCCAATTTTCCTACCACGACAAGGTCAAGGAATTGCCGGATCACAACGTCAAGCTCGTGTTCATCGACGACGAT CGTAACGGTAACCGCCATAACCACCTGCATTTCTCACAGCTGATGGAAGCTGAGAGTGAATTGGAATTGGAACAGATCGA TCCCGACGATGTGGTGGCGCTGCCGTATTCATCAGGGACAACCGGTCTTCCGAAAGGGGTGATGTTAACGCACAAAGGAT TGGTAACAAGCATTGCACAGCAAGTAGATGGGGAGAATCCGAACCTGTTCTACCACTGTGAAGATGTGATTCTTTGTGTT CTTCCTCTGTTTCACATTTACTCTCTGAACTCTGTTTTGCTGTGCGGGCTGAGAGCGAAGGCGGCGATATTGCTGATGCC GAAATTCGAAATCAATGCGTTGCTGAGTTTGGTTGAGAAACACAGGATCACGGTGGCGCCGGTGGTGCCGCCGATTGTTC TGGCGATTGCGAAGTCGCCGGAGCTGAATAAACATGACTTGTCTTCAATTAGGATATTGAAATCCGGTGGAGCACCGCTG GGTAAAGAAGTCGAACAAGCTCTCACCGCCAAATTCCCCAACGCCAAATTCGGTCAGGGATATGGAATGACAGAGGCAGG GCCAGTGTTAACAATGTGCTTAGCATTTGCTAAGGAACCAATTGATGTAAAACCAGGTGCATGCGGAACCGTTGTAAGGA ATGCAGAGATGAAGATTGTGGATCCTGAAACTGGCAATTATTTATCTCGAAACCAGTCTGGTGAAATTTGCATAAGAGGT GACCAGATCATGAAAGGTTATCTAAATGATCCAGAGGCTACGGAGAGAACGATAGACAAAGGGGGTTGGTTACATACAGG TGACATTGGTTATATTGACGATGATGATGAGTTGTTCATCGTTGATAGGTTGAAGGAATTGATCAAATACAAAGGATTTC AGGTTGCTCCAGCTGAACTTGAAGCCCTTCTTCTTTCTCATCCCAAAATCTCTGATGTTGCTGTTGTCCCGATGAAGGAT GAAGCAGCTGGAGAGGTACCAGTTGCATTTGTTGTGAGATCAAATGGTCACACCGACATAAACGAGGATGAAATTAAGCA GTTTATCTCCAAACAGGTGGTATTTTACAAAAGAATAAACAGAGTATTCTTCATTGATGCAATTCCCAAGTCACCATCAG GCAAAATCTTGCGTAAGAATCTGAGATCAAAGTTAGTAGCTGGTGTTCCAATTTGA
Protein sequence (LotjaGi3g1v0001800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAILENKKNEEEEQFIFRSKLPDIYIPKHLPLHSYCFQNLPDFASRPCLINAPTGDVYTYHDVDLAARRTASGLHKLCNI QKGDVIMILLPNSPEFVFSFLAASHLGAMATAANPFFTAAEIAKQAKASNTKLLITQFSYHDKVKELPDHNVKLVFIDDD RNGNRHNHLHFSQLMEAESELELEQIDPDDVVALPYSSGTTGLPKGVMLTHKGLVTSIAQQVDGENPNLFYHCEDVILCV LPLFHIYSLNSVLLCGLRAKAAILLMPKFEINALLSLVEKHRITVAPVVPPIVLAIAKSPELNKHDLSSIRILKSGGAPL GKEVEQALTAKFPNAKFGQGYGMTEAGPVLTMCLAFAKEPIDVKPGACGTVVRNAEMKIVDPETGNYLSRNQSGEICIRG DQIMKGYLNDPEATERTIDKGGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLLSHPKISDVAVVPMKD EAAGEVPVAFVVRSNGHTDINEDEIKQFISKQVVFYKRINRVFFIDAIPKSPSGKILRKNLRSKLVAGVPI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 9 | 549 | 541 | 5.8E-290 | – | |
| PANTHER | 9 | 549 | 541 | 5.8E-290 | – | |
| Gene3D | 14 | 445 | 432 | 1.7E-160 | ||
| SUPERFAMILY | 18 | 546 | 529 | 5.1E-146 | – | |
| CDD | 26 | 541 | 516 | 0.0 | – | |
| Pfam | 45 | 450 | 406 | 1.5E-107 | ||
| ProSitePatterns | 194 | 205 | 12 | - | ||
| Gene3D | 446 | 547 | 102 | 1.2E-29 | – | |
| Pfam | 459 | 535 | 77 | 2.9E-16 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. |
Expression pattern of LotjaGi3g1v0001800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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