Domain Predictions — View

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cd05904

Source: CDD

Description

4CL

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 24

Transcript	Name	Description	Predicted domains	Domain count
Lj1g3v0129860.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	4-coumarate:CoA ligase isoenzyme 3 [Glycine max] gi\|351723189\|ref\|NP_001237270.1\|	Domains G3DSA:2.30.38.10 G3DSA:3.30.300.30 G3DSA:3.40.50.980 IPR000873 IPR020845 IPR025110 PF00501 PF13193 PS00455 PTHR24096 PTHR24096:SF169 SSF56801 cd05904 mobidb-lite	14
Lj2g3v1536270.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: 4-coumarate--CoA ligase-like 6-like [Glycine max] gi\|356497603\|ref\|XP_003517649.1\|	Domains CYTOPLASMIC_DOMAIN G3DSA:2.30.38.10 G3DSA:3.30.300.30 G3DSA:3.40.50.980 IPR000873 IPR020845 IPR025110 NON_CYTOPLASMIC_DOMAIN PF00501 PF13193 PS00455 PTHR24096 PTHR24096:SF253 SSF56801 TMhelix TRANSMEMBRANE cd05904	17
Lj3g3v2040010.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	4-coumarate:CoA ligase [Amorpha fruticosa] gi\|17063848\|gb\|AAL35216.1\|	Domains G3DSA:2.30.38.10 G3DSA:3.30.300.30 G3DSA:3.40.50.980 IPR000873 IPR020845 IPR025110 PF00501 PF13193 PS00455 PTHR24096 PTHR24096:SF207 SSF56801 cd05904	13
Lj4g3v2093610.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: 4-coumarate--CoA ligase-like isoform X1 [Cicer arietinum] gi\|502150208\|ref\|XP_004507841.1\|	Domains G3DSA:2.30.38.10 G3DSA:3.30.300.30 G3DSA:3.40.50.980 IPR000873 IPR020845 IPR025110 PF00501 PF13193 PS00455 PTHR24096 PTHR24096:SF149 SSF56801 cd05904	13
Lj5g3v0277980.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: 4-coumarate--CoA ligase-like 5-like [Glycine max] gi\|356553319\|ref\|XP_003545004.1\|	Domains CYTOPLASMIC_DOMAIN G3DSA:2.30.38.10 G3DSA:3.30.300.30 G3DSA:3.40.50.980 IPR000873 IPR020845 IPR025110 NON_CYTOPLASMIC_DOMAIN PF00501 PF13193 PS00455 PTHR24096 PTHR24096:SF186 SSF56801 TMhelix TRANSMEMBRANE cd05904	17
Lj5g3v1699020.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: 4-coumarate--CoA ligase-like 5-like [Cicer arietinum] gi\|502118174\|ref\|XP_004496136.1\|	Domains CYTOPLASMIC_DOMAIN G3DSA:2.30.38.10 G3DSA:3.30.300.30 G3DSA:3.40.50.980 IPR000873 IPR020845 IPR025110 NON_CYTOPLASMIC_DOMAIN PF00501 PF13193 PS00455 PTHR24096 PTHR24096:SF213 SSF56801 TMhelix TRANSMEMBRANE cd05904 mobidb-lite	18
Lj6g3v0750030.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: 4-coumarate--CoA ligase-like 1-like [Cicer arietinum] gi\|502177503\|ref\|XP_004516098.1\|	Domains G3DSA:2.30.38.10 G3DSA:3.30.300.30 G3DSA:3.40.50.980 IPR000873 IPR020845 IPR025110 PF00501 PF13193 PS00455 PTHR24096 PTHR24096:SF116 SSF56801 cd05904	13
LotjaGi1g1v0236400.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	4-coumarate:CoA ligase-like protein; TAIR: AT5G63380.1 AMP-dependent synthetase and ligase family protein; Swiss-Prot: sp\|Q84P23\|4CLL9_ARATH 4-coumarate--CoA ligase-like 9; TrEMBL-Plants: tr\|I1JXI1\|I1JXI1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0236400	Domains CYTOPLASMIC_DOMAIN G3DSA:3.30.300.30 G3DSA:3.40.50.12780 IPR000873 IPR020845 IPR025110 IPR042099 NON_CYTOPLASMIC_DOMAIN PF00501 PF13193 PS00455 PTHR24096 PTHR24096:SF251 SSF56801 TRANSMEMBRANE cd05904	16
LotjaGi1g1v0236400.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	4-coumarate:CoA ligase-like protein; TAIR: AT5G63380.1 AMP-dependent synthetase and ligase family protein; Swiss-Prot: sp\|Q84P23\|4CLL9_ARATH 4-coumarate--CoA ligase-like 9; TrEMBL-Plants: tr\|G7J515\|G7J515_MEDTR 4-coumarate:CoA ligase-like protein; Found in the gene: LotjaGi1g1v0236400	Domains G3DSA:3.30.300.30 G3DSA:3.40.50.12780 IPR000873 IPR025110 IPR042099 PF00501 PF13193 PTHR24096 PTHR24096:SF251 SSF56801 cd05904	11
LotjaGi2g1v0340700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	4-coumarate--CoA ligase family protein; TAIR: AT4G19010.1 AMP-dependent synthetase and ligase family protein; Swiss-Prot: sp\|Q84P24\|4CLL6_ARATH 4-coumarate--CoA ligase-like 6; TrEMBL-Plants: tr\|V7CLJ6\|V7CLJ6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0340700	Domains CYTOPLASMIC_DOMAIN G3DSA:3.30.300.30 G3DSA:3.40.50.12780 IPR000873 IPR020845 IPR025110 IPR042099 NON_CYTOPLASMIC_DOMAIN PF00501 PF13193 PS00455 PTHR24096 PTHR24096:SF261 SSF56801 TMhelix TRANSMEMBRANE cd05904	17
LotjaGi2g1v0450000.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	4-coumarate:CoA ligase-like protein; TAIR: AT1G65060.1 4-coumarate:CoA ligase 3; Swiss-Prot: sp\|P31687\|4CL2_SOYBN 4-coumarate--CoA ligase 2; TrEMBL-Plants: tr\|Q8S5C2\|Q8S5C2_SOYBN 4-coumarate:CoA ligase isoenzyme 3; Found in the gene: LotjaGi2g1v0450000	Domains G3DSA:3.30.300.30 G3DSA:3.40.50.12780 IPR000873 IPR020845 IPR025110 IPR042099 PF00501 PF13193 PS00455 PTHR24096 PTHR24096:SF169 SSF56801 cd05904 mobidb-lite	14
LotjaGi3g1v0001800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	4-coumarate:CoA ligase-like protein; TAIR: AT3G21240.1 4-coumarate:CoA ligase 2; Swiss-Prot: sp\|O24145\|4CL1_TOBAC 4-coumarate--CoA ligase 1; TrEMBL-Plants: tr\|G7ZYW6\|G7ZYW6_MEDTR 4-coumarate:CoA ligase-like protein; Found in the gene: LotjaGi3g1v0001800	Domains G3DSA:3.30.300.30 G3DSA:3.40.50.12780 IPR000873 IPR020845 IPR025110 IPR042099 PF00501 PF13193 PS00455 PTHR24096 PTHR24096:SF334 SSF56801 cd05904	13
LotjaGi3g1v0167700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	4-coumarate:CoA ligase; TAIR: AT4G05160.1 AMP-dependent synthetase and ligase family protein; Swiss-Prot: sp\|Q9M0X9\|4CLL7_ARATH 4-coumarate--CoA ligase-like 7; TrEMBL-Plants: tr\|H2BER4\|H2BER4_SOYBN 4-coumarate:CoA ligase; Found in the gene: LotjaGi3g1v0167700	Domains G3DSA:3.30.300.30 G3DSA:3.40.50.12780 IPR000873 IPR018247 IPR020845 IPR025110 IPR042099 PF00501 PF13193 PS00018 PS00455 PTHR24096 PTHR24096:SF357 SSF56801 cd05904	15
LotjaGi3g1v0342800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	4-coumarate:CoA ligase-like protein; TAIR: AT3G21240.1 4-coumarate:CoA ligase 2; Swiss-Prot: sp\|O24145\|4CL1_TOBAC 4-coumarate--CoA ligase 1; TrEMBL-Plants: tr\|Q8W558\|Q8W558_9FABA 4-coumarate:CoA ligase; Found in the gene: LotjaGi3g1v0342800	Domains G3DSA:3.30.300.30 G3DSA:3.40.50.12780 IPR000873 IPR020845 IPR025110 IPR042099 PF00501 PF13193 PS00455 PTHR24096 PTHR24096:SF334 SSF56801 cd05904	13
LotjaGi3g1v0342800.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	4-coumarate:CoA ligase; TAIR: AT3G21240.1 4-coumarate:CoA ligase 2; Swiss-Prot: sp\|O24145\|4CL1_TOBAC 4-coumarate--CoA ligase 1; TrEMBL-Plants: tr\|Q8W558\|Q8W558_9FABA 4-coumarate:CoA ligase; Found in the gene: LotjaGi3g1v0342800	Domains G3DSA:3.30.300.30 G3DSA:3.40.50.12780 IPR000873 IPR020845 IPR025110 IPR042099 PF00501 PF13193 PS00455 PTHR24096 PTHR24096:SF334 SSF56801 cd05904	13
LotjaGi3g1v0342800.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	4-coumarate:CoA ligase; TAIR: AT3G21240.1 4-coumarate:CoA ligase 2; Swiss-Prot: sp\|O24145\|4CL1_TOBAC 4-coumarate--CoA ligase 1; TrEMBL-Plants: tr\|Q8W558\|Q8W558_9FABA 4-coumarate:CoA ligase; Found in the gene: LotjaGi3g1v0342800	Domains G3DSA:3.30.300.30 G3DSA:3.40.50.12780 IPR000873 IPR020845 IPR025110 IPR042099 PF00501 PF13193 PS00455 PTHR24096 PTHR24096:SF334 SSF56801 cd05904	13
LotjaGi3g1v0486700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	4-coumarate:CoA ligase-like protein; TAIR: AT4G05160.1 AMP-dependent synthetase and ligase family protein; Swiss-Prot: sp\|Q9M0X9\|4CLL7_ARATH 4-coumarate--CoA ligase-like 7; TrEMBL-Plants: tr\|U3PIV4\|U3PIV4_PHAVU 4-coumarate:coenzyme A ligase 8; Found in the gene: LotjaGi3g1v0486700	Domains CYTOPLASMIC_DOMAIN G3DSA:3.30.300.30 G3DSA:3.40.50.12780 IPR000873 IPR020845 IPR042099 NON_CYTOPLASMIC_DOMAIN PF00501 PS00455 PTHR24096 PTHR24096:SF357 SSF56801 TMhelix TRANSMEMBRANE cd05904	15
LotjaGi3g1v0542700_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	4-coumarate-CoA ligase; TAIR: AT1G65060.1 4-coumarate:CoA ligase 3; Swiss-Prot: sp\|Q42982\|4CL2_ORYSJ Probable 4-coumarate--CoA ligase 2; TrEMBL-Plants: tr\|H2E8S2\|H2E8S2_VITVI Coumaroyl-CoA ligase; Found in the gene: LotjaGi3g1v0542700_LC	Domains G3DSA:3.30.300.30 G3DSA:3.40.50.12780 IPR000873 IPR025110 IPR042099 PF00501 PF13193 PTHR24096 PTHR24096:SF169 SSF56801 cd05904	11
LotjaGi4g1v0299500.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	4-coumarate:CoA ligase-like protein; TAIR: AT3G21240.1 4-coumarate:CoA ligase 2; Swiss-Prot: sp\|O24145\|4CL1_TOBAC 4-coumarate--CoA ligase 1; TrEMBL-Plants: tr\|A0A075EAU5\|A0A075EAU5_ASTME 4-coumaroyl:CoA-ligase; Found in the gene: LotjaGi4g1v0299500	Domains G3DSA:3.30.300.30 G3DSA:3.40.50.12780 IPR000873 IPR020845 IPR025110 IPR042099 PF00501 PF13193 PS00455 PTHR24096 PTHR24096:SF334 SSF56801 cd05904	13
LotjaGi5g1v0001200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	4-coumarate--CoA ligase family protein; TAIR: AT1G20510.1 OPC-8:0 CoA ligase1; Swiss-Prot: sp\|Q84P21\|4CLL5_ARATH 4-coumarate--CoA ligase-like 5; TrEMBL-Plants: tr\|I1MBZ0\|I1MBZ0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0001200	Domains CYTOPLASMIC_DOMAIN G3DSA:3.30.300.30 G3DSA:3.40.50.12780 IPR000873 IPR020845 IPR025110 IPR042099 NON_CYTOPLASMIC_DOMAIN PF00501 PF13193 PS00455 PTHR24096 PTHR24096:SF305 SSF56801 TMhelix TRANSMEMBRANE cd05904	17
LotjaGi5g1v0254000.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	4-coumarate:CoA ligase 4; TAIR: AT1G20510.1 OPC-8:0 CoA ligase1; Swiss-Prot: sp\|Q84P21\|4CLL5_ARATH 4-coumarate--CoA ligase-like 5; TrEMBL-Plants: tr\|A0A151T0U8\|A0A151T0U8_CAJCA 4-coumarate--CoA ligase-like 5; Found in the gene: LotjaGi5g1v0254000	Domains CYTOPLASMIC_DOMAIN G3DSA:3.30.300.30 G3DSA:3.40.50.12780 IPR000873 IPR020845 IPR025110 IPR042099 NON_CYTOPLASMIC_DOMAIN PF00501 PF13193 PS00455 PTHR24096 PTHR24096:SF305 SSF56801 TMhelix TRANSMEMBRANE cd05904 mobidb-lite	18
LotjaGi5g1v0254000.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	4-coumarate:CoA ligase 4; TAIR: AT1G20510.2 OPC-8:0 CoA ligase1; Swiss-Prot: sp\|Q84P21\|4CLL5_ARATH 4-coumarate--CoA ligase-like 5; TrEMBL-Plants: tr\|A0A151T0U8\|A0A151T0U8_CAJCA 4-coumarate--CoA ligase-like 5; Found in the gene: LotjaGi5g1v0254000	Domains CYTOPLASMIC_DOMAIN G3DSA:3.30.300.30 G3DSA:3.40.50.12780 IPR000873 IPR020845 IPR042099 NON_CYTOPLASMIC_DOMAIN PF00501 PS00455 PTHR24096 PTHR24096:SF305 SSF56801 TMhelix TRANSMEMBRANE cd05904 mobidb-lite	16
LotjaGi6g1v0142900.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	4-coumarate:CoA ligase-like protein; TAIR: AT1G62940.1 acyl-CoA synthetase 5; Swiss-Prot: sp\|Q9LQ12\|4CLL1_ARATH 4-coumarate--CoA ligase-like 1; TrEMBL-Plants: tr\|A0A151S4W7\|A0A151S4W7_CAJCA 4-coumarate--CoA ligase-like 1; Found in the gene: LotjaGi6g1v0142900	Domains G3DSA:3.30.300.30 G3DSA:3.40.50.12780 IPR000873 IPR020845 IPR025110 IPR042099 PF00501 PF13193 PS00455 PTHR24096 PTHR24096:SF366 SSF56801 cd05904	13
LotjaGi6g1v0174900_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	4-coumarate:CoA ligase-like protein; TAIR: AT1G65060.1 4-coumarate:CoA ligase 3; Swiss-Prot: sp\|P31687\|4CL2_SOYBN 4-coumarate--CoA ligase 2; TrEMBL-Plants: tr\|Q8S5C2\|Q8S5C2_SOYBN 4-coumarate:CoA ligase isoenzyme 3; Found in the gene: LotjaGi6g1v0174900_LC	Domains G3DSA:3.30.300.30 G3DSA:3.40.50.12780 IPR000873 IPR025110 IPR042099 PF00501 PF13193 PTHR24096 PTHR24096:SF169 SSF56801 cd05904	11

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
cd05904	CDD	1	4.17