Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi3g1v0003600 |
Transcript ID | LotjaGi3g1v0003600.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT1G80880.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9SAH2|PP137_ARATH Pentatricopeptide repeat-containing protein At1g80880, mitochondrial; TrEMBL-Plants: tr|K7M423|K7M423_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0003600 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:446613..453741) extracted from Lotus japonicus Gifu genome v1.2.
GTCAAACTAAAAAGAGCAAAAGTAAAAAAAAGTTCCAATGAATCATGACATATGACTCAAGGCACACGTGCGGGACCTAA CTAAGAAGCTAAACATTCCATTTTGGAGTATTCAGTCACCACACTACACTAAGGCAGCAATCCATCATCTAACACTCAAC ACTATAAACAATAAGCAGGTCGGTGAAGGTTCACTCCCACTTGTCAAAATGGCTCAACATTTACACCACTACTACCTTCA CCTTTCAAGAGGATTGCATGCTAATGCTATTGCAATTGTCAAACGTCCACACCATGTGGTTCCATTTACATTCTCCTTCT CTCAGGCATTTCATCAAACACCTTCATCACACTCTCACTCTCAGCCTCAGATTCAGCACACACCCTTCAACTTCAACTTC AACCTGGGTTTGGACGACCCAGCTCTACCCCAGTTCCTCGAATTGCTCAAAAATGAAGATCATTTCCTACCGCAAGAAGC AGATTTACGACCAAACAGAGATTTGATATGTTCTGCTATTTGGGCTTTGAGGGAAGAGTGGAAACCTGCGCTCCGAGCCT TCAAATTGATTGACTACGATGAGAAAGTTTGCAACTTGATCATATGGGTCTTGGGAACTCATGCAAAATTTTCCACTGCC TGGAGCATCATTCGGGAAATGCATCGTTCTTCTCTGTCCACACGCCAGGCCATGCTTATTATGATTGATAGGTGAGGTAA CATCAAACTCTATCTTTGAATTTCTGTTGAACTCTATCAAATTCTTATTTCTCCCGTTAGTATATTGAGATATGTGAAAT CACGTTTGTGTTAGCATCGACGCAAAAACTAACATTTATTTAACCATGATAAGTTTCACCAATTAGTTAAGTTCCATATC AACTCTATTGATAACTGATGATTTTCATTTTCCCCCCTTTTTACTTGTGGCATTTTATTTCAATCAGATATGCAGCTGCA AATAACTCAGCCAAGGCTATTCAAACATTCAATTTTATGGACAATTTCAGATTGAGTCCAGATCAGGAAGCATTCCATGC ACTTTTGACTGCGCTTTGTAAATATGGTAACGTCGAAGAGGCTGAAGAGTTTATGCTGGTGAACAAGAAGCTCTTCCCAC TTGAGACAGAGAGCTTTAACATTATTCTTAATGGATGGTGTAACATTACACATGATGTGTATGAAGCAAAAAGAGTTTGG AGGGAAATGTCAAAACAATGTATAACACCAGATGCTACTTCATATAGCCACATGATTTCCTGCTTTTCAAAGGAAGGGAA TCTCTTTGACTCTCTCAGACTCTATGATCAGATGAAGAAAAGGGGATGGATCCCTGGGATAGAGGTTTATAATTCTTTAG TGTATGTTTTAACTCGTGAAAATTGCTTGAAGGAAGCTCTCAAGACCATAGATAAGTTGAAAGAGCAAGGTTTGCAGCCA GATTATGCCACCTTTAACTCCATGATACTCCCTCTCTGTGAAGCTGGAAAACTAGCAGAGGCAAGAATAATATTAAACAC AATGGTGGATGAGAATATCAGTCCAACCATTGAGACCTACCATGCTTTTTTGGAGGGAACAGATTACCAAGGAGTATTAG AATTTCTAAGTAGGATGAAAGGTTCTGGTTTAGGTCCAAATAAGGATTCCTTTCTCATAATTCTGGTAAAATTCTTAAAG TTGAAGCAGCCTGTAAATGCACTGAACATTTGGATGGAAATGAAGACGTATGGTGTGGTGCCCAGTTGTATGCATTACCA AATAATGGTTGAAGGGCTTGTAACATGTAAGTGGTTCATAAAGGCCAGGGATTTTTATGAGGAGATGATTTCAAATGGAT GTTCAGAAGATCCAAAGCTTAATAAGCTCTTCGAGAAAGAAGTCCTTGACAGCGGTGATCAAGGAAAACAGAATGTAAAA AAGGCTAAAAATGTGAGCATTCTGAAAAGTAATAAGATGAAATTGAAAAATAGTTGAGACCTGTCAAGAAAGAAGGCATT GTCTAATTGTGGTGGGGTTTCTCGTAAAATTCACTTGGTCATATTCCTGGAAACTCAGGCACTCTGGCTGTAGCCCCTTG TCAACCTGTCCAAGTTTTGAATTTTATTATTGGAGCAGATGTACAGAAGACATGGAAGTGTTGGGTGAATCCATCGTTGT CTGATCTTCACATAAATACTTGAGGGTTTTGGTTGCTGCTGCATGCCCTGGACCTCATACTCCCTTGTTTTGATTGTGTG GTTCATATTTCAACAAAGCATGAAGTTCATATTCTGGTTTTGTTTCTTCCTGGAGTTCCCCATTGATGGTTGGTAAGCTA TATCTTAACAAAATTGTGAAAATGAGTCTAATAGCACTCCCTCCCAACCTAATATCTATATAAAAAAGGAGCATATGTTA TGCAATAACTAGTAACTACATGTTTTCTTCCGCAGTCTATTAGGTAAAGATAAATTTAGTTAAAGATTGATAGTATTTTA GCAGTTTTTATGTGCAAAACTGTAGTGTATTATATTCTCCTTCTGCTATATCATCAGGGAGCTATAATCGTGTCTTATAT TGGGAGGACAGGTCTTCATATCATGGTATTAGAGCCATACCATCCTTTGTGATCTCTCCAATCACAATTTAGCTGCTAAG TTCTTTAAAGTTTGGAACTATTATAACAATAGATTCTTTCACAAATAAGCAATCTAATTGATCGTTGTTATCCCCGTTTT TTGAAGTATTCTAATTTTGTTTGTATCTTTGCTTTTTGGGTTCCATCTGCTAGCGCTAACCCTTCATACATTGTCGTGGT TAGTACCCTTTTTTTGTTATTTAGTTTTAAGGTTTCAACTGCTGTTAGCGTTAGCTCTATAGTCATCAGGAGCCTCAGGT GACATAAGTTGTCTTAGTAGCCACTGATCAACTGATCCTCAGTGTATCGTCATCTCCATCCAATGTTCTTAGGGCTTCAA TCGCTATAAGTGTTGCCCCAATCATCAGGTGCCCCCTTGTCAATCTTAAAAGCCATCAACTGACCGATCTCCCAAGCGTC TCCGCCAGATCCTGCCAGATGCTATGCCATTCACCCCCAAGCTTTTGCCAGCGTGTGAGGTTGGTGCGCCACCTTAATGG CCTCTGTTGACGCTGCTTCTTTTATGTCCTTGGCTCCTCTTGATTCTATTTTTGGTGTTTTTGTTTGTGGTTGTTGTTGT TTCACCCCTATTTTGTTTTTGGACGTTGTTGGTTTTTAGCCCTAGCTCATAGTCTACTTTTGTTCCTTGAATTAGCTGAC TTCACAACAATCTTAGAGAATCTGTTTGGCCTTACAACAACCCAAGATAATTAGTATGGCTCCATCATTATTTATCTTTT TTTTAAAGGATATATTTGTAACAAGCTATCAACTAAGTAAACTTTAGATTGAGGGAGTTGCTAGAATGTGTAAAGATATC TTACAAATATCTTGATTATATCGTTGAGTAGCTTCAACTAGATTATTATGTAAGATTAATTTCTTTATTTATATGGATTT GTTTCCATAGTTAATTAGGATTAGAAACCTTAATTAGTTTTCGTACCTGACTGAATTAGGAACCTTCACCACAATAAAAA TAAGGGTGAACCTTTTGTCAAACCAACTAATGGGAATAATACCAAGGGACAGAATGAGCACTCTTGTCTAATGCGTACCG TTTTAATAGTGACACCTTTAGACTTTTTGATTCACACTGACTCCTGTGGTCCATAACTACATGACTAATCAACTAACAAC ATACCAGAAGAAGTGACTGTACAATCAAATAATTTTTAGGTGTGAGAATTGTTTCTTAACCAAAAACCAACTTAGTTGTT AGCTCTCCAATATCTAGCCGACCAATGCAGCAATGAATCTTTGTTGTAGTAGCTTATAGTGTCAAATCCAATTAGATGTG GTGTTATTGTTTTGTCTTCTTGTCTCGAGTAAGTTTGACTGCCATTTCACAAAGCCAATTCAGAAAGTTTTGGTGGATCA TTGGACAGCATTCAGAAGCTTGATTCGGTTTAACTACTGCTTTTGTTTTAGTATGTAAAAAATGGGATGCATATCAACAT ATGATGAACAGAGTGAAAATCACAACAGAAGTAATTTTTTTTCTGAAGATAGAAAACGAATATACAATATCATTCTATCA TAGTAAAAACTCAAGTGTGAGAAAGTCATGGAAAGCCTACCAAACTCAATCTCCTAAAAACAACTGCAACTAACACAAAC CCTTTTGCTCTCATCTATTACAATGAATAGCTAAGCTAACCATCCCAAACTCAGTTTACCTGTGACTCTTCGCTTCTGAG GGAGACAGTCAATGCAACATTCTAATATAGCTAGCACACTGAGGACAAACAAGGAAATTGAGTCATCAAATCAAGTTGAT GCAACTTTTATTGGAGAAATGCACAAATAACTTATCTGATATACATTTTAAACATAAATCTCACAGCAAGTGTATTACTA TTAGGTCCCAAATGCAAACATTTTTAATGATCTGTCCCATACTGCTCTCATCTTTACATGATCTTTACAAGAAACCTTCA ATATTACAAAACCTATTCAGCATTCCCCTTCTGTTTCCTCCTTGATCTGCTGTATAATTTAGAAGGTGGAGAAGGAGAAA ACTCAAATGGAAGTGGTGGAAGGGCCATTTCGCCTTTCAAAATCTTAACAATGTCCCGGATATCTGGCCGCAACTCTGGA ATTTTCTGTAAGCAAGTTAGTGCCAAGTTGATGCACAAGCTTGCTTGGTCCTTGCTGTAATCTTCTTTCAATATTTCATC TACTAGCTCTAAAATGTTACCAGCTTGAGCTAAATTCCTACACCAGCTTATCAAGTTAGCTTTCTCTAGCTTCATGGGGG ATGCAAGAACATGTAATGGTCTTCTACCTGACACAATTACTAGAACCAAAACTCCAAAACTGTAAATGTCAGCTTTCTCC ATTAAGAACCCACACCCTCCATATTCTGGTGCTACATAACACAGTGTCCCTCTCATGCTAGTTGTGCTGCTGAGCTCCCG GCTGAAAAGGTCTCCACTCCACATGTCACTTCCAATGGAACGAGTGCTTTTTTTCTTCAAACCTCTTCTGAAGCTAAACT CCCCATTTTGATCACATTCATTCTGACCCTGCTCTCCACAGTTCTTACCTTGGCAAAGATAAAACCTTTTACCCAAATCA AAATGGGGCACTTTCAAGCCTTTTTTCCTCTTAGTTTTAAGACTTTTCATCTTACTAGTCTTTTTGCTTAATTCAGCAAG ATGCTCTTCTTTCCACCACTCTTTCATCTTCCTTTGATTCTTCTTCTCCTTTGGTTCTTTCTTATCAAACACAACATTTG TATAACCAATACCATGTTCCTGTAGTTGGGGTCCATTAGCATCATCATCATTGGCTTTATTCATTGGACTTGAATTTTCC AATTCTGCTTTCTCCTGAGCATTGTTCTGACCATCATCCCAATCAGCGTTTGATGGACAAATCTGACTCCCTATCCACTC CATGACATAGTCTTTACTACATAGTTCTCCACTTTCATCTTGTCTCCACCACCAATCCTTTACCAAAGAAGCATTACCAG TCAACTCCTTACTATGATCAATGCTAGAAAACTCATCATCACAACGAACAAACTCATTATTCCAATCATCCTCTCCTATA TCCACCACTGTTGAAATTTCCTTTCCCTTTGCATTTACAGTCTTACTTTCACTTTCACTGGCAATTTTGGCATTATAACT CAAAGAATCCAAGTTCAAAGTTCTAGCATTATAACAGGTCCTGCTATTTTTGGATGAAGAAGAAGCTTGCAAAGCTTGAG CAAAATCTACTTCATTAACACTATCAACTGGAGTACCAATAACAGGAGTTTCTGCAGTTATATTACCTGAAAGTTCTTGG CTTTTACATAGGTCCTGGCTAAAGAAGTCCACACCATAATCACCCTCCACCTTAATCCTTGACAGCCCAAAATCTGAGAT CTTTCCACAGTGCTCTGCATCAAGTAGAACATTGCTTGGCTTGATATCACCATGGATCACTGGAGGATCACATCCATGGT GCAAGAACTCCAATGCTCTAGCAACATCCATGATTATGCAAAATCTTCTCTCCCAACTCAAACTCAAACACTCATCTCCA AAGAGGGACTCTTGCAAGCTTCTCTTAGGCATATACTCATACACCAAGACCCTTTTATTCTTTTCCACACAATACCCCAA AAGGGTCACCAGGAATGGCGATCTTAGCCCTCCAAGAATCTGCAGCTCATTTTGAAACTCTCTCTCTGTCTGCAAAGAGA AAGAGTCTAGGCACTTGACAGCAATCAAGTTTCCATCTTTAAGCATTCCCTTAAAAACTGTGCCAGACCCACCTTTACCA ATGACATTGGCAGTGTCAAAGCCATTGGTAGCTTGCTTTAAATCTTTGTATGAGAATCTCAGGAGCTTCAAGGGATCACT TGCATCAAAGGGTATAGTTTTGGTTCTGTGTAGAAGAGAATGCCACAGATGGTAAAGGAAGTAAAGGACAGAACAGAAAA TCACAATAGAAGCTGAAAGGGTCAGTGCTATGAACAGGACTCTGGTTTTGGTGAAAAAACTGGGACCTGGAGAAGGGAAG GGTCGGGAAGGCATGGCGTGTGGATGAATGCTGATCACAGCAACTGATGATGATGAAAAAGGAGAAGAAAAGGTGAATGA AGAAGAAGAGGGAGATGGGCATTCTGGTTATCCATTTTTGTTTCTCTTTGTATTATGAATGGGTATCCATTCCAAAGTGG GGTTTGCTTTACAATTAGTTAATCATTAGAGGAGGAGCTGTATTCTACTATTGTCAACTTTGTCTTGTTTTGTTTTTCTT GTTCTTCCGTTAATCTAACATTTATTTACTTTTCTATGCCACTAGTTATTATTTCTAATGCATAATGAGATTAGCAATTG GGAAATGAGGATTAGAAAAAGGGAGTGTAGTGAAGTGAGGGCCCAAGGCTTGACTAAAGAGAAAGTGTTGCTAGTATAGT AGTATTTGATCCATTACATGCATATTGAGACTTTTTTTTTATCTCTCTTTTTCAATCACATCATATTATATATCGCATCT ATCACTTAT
CDS sequence (LotjaGi3g1v0003600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCAACATTTACACCACTACTACCTTCACCTTTCAAGAGGATTGCATGCTAATGCTATTGCAATTGTCAAACGTCC ACACCATGTGGTTCCATTTACATTCTCCTTCTCTCAGGCATTTCATCAAACACCTTCATCACACTCTCACTCTCAGCCTC AGATTCAGCACACACCCTTCAACTTCAACTTCAACCTGGGTTTGGACGACCCAGCTCTACCCCAGTTCCTCGAATTGCTC AAAAATGAAGATCATTTCCTACCGCAAGAAGCAGATTTACGACCAAACAGAGATTTGATATGTTCTGCTATTTGGGCTTT GAGGGAAGAGTGGAAACCTGCGCTCCGAGCCTTCAAATTGATTGACTACGATGAGAAAGTTTGCAACTTGATCATATGGG TCTTGGGAACTCATGCAAAATTTTCCACTGCCTGGAGCATCATTCGGGAAATGCATCGTTCTTCTCTGTCCACACGCCAG GCCATGCTTATTATGATTGATAGATATGCAGCTGCAAATAACTCAGCCAAGGCTATTCAAACATTCAATTTTATGGACAA TTTCAGATTGAGTCCAGATCAGGAAGCATTCCATGCACTTTTGACTGCGCTTTGTAAATATGGTAACGTCGAAGAGGCTG AAGAGTTTATGCTGGTGAACAAGAAGCTCTTCCCACTTGAGACAGAGAGCTTTAACATTATTCTTAATGGATGGTGTAAC ATTACACATGATGTGTATGAAGCAAAAAGAGTTTGGAGGGAAATGTCAAAACAATGTATAACACCAGATGCTACTTCATA TAGCCACATGATTTCCTGCTTTTCAAAGGAAGGGAATCTCTTTGACTCTCTCAGACTCTATGATCAGATGAAGAAAAGGG GATGGATCCCTGGGATAGAGGTTTATAATTCTTTAGTGTATGTTTTAACTCGTGAAAATTGCTTGAAGGAAGCTCTCAAG ACCATAGATAAGTTGAAAGAGCAAGGTTTGCAGCCAGATTATGCCACCTTTAACTCCATGATACTCCCTCTCTGTGAAGC TGGAAAACTAGCAGAGGCAAGAATAATATTAAACACAATGGTGGATGAGAATATCAGTCCAACCATTGAGACCTACCATG CTTTTTTGGAGGGAACAGATTACCAAGGAGTATTAGAATTTCTAAGTAGGATGAAAGGTTCTGGTTTAGGTCCAAATAAG GATTCCTTTCTCATAATTCTGGTAAAATTCTTAAAGTTGAAGCAGCCTGTAAATGCACTGAACATTTGGATGGAAATGAA GACGTATGGTGTGGTGCCCAGTTGTATGCATTACCAAATAATGGTTGAAGGGCTTGTAACATGTAAGTGGTTCATAAAGG CCAGGGATTTTTATGAGGAGATGATTTCAAATGGATGTTCAGAAGATCCAAAGCTTAATAAGCTCTTCGAGAAAGAAGTC CTTGACAGCGGTGATCAAGGAAAACAGAATGTAAAAAAGGCTAAAAATGTGAGCATTCTGAAAAGTAATAAGATGAAATT GAAAAATAGTTGA
Protein sequence (LotjaGi3g1v0003600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAQHLHHYYLHLSRGLHANAIAIVKRPHHVVPFTFSFSQAFHQTPSSHSHSQPQIQHTPFNFNFNLGLDDPALPQFLELL KNEDHFLPQEADLRPNRDLICSAIWALREEWKPALRAFKLIDYDEKVCNLIIWVLGTHAKFSTAWSIIREMHRSSLSTRQ AMLIMIDRYAAANNSAKAIQTFNFMDNFRLSPDQEAFHALLTALCKYGNVEEAEEFMLVNKKLFPLETESFNIILNGWCN ITHDVYEAKRVWREMSKQCITPDATSYSHMISCFSKEGNLFDSLRLYDQMKKRGWIPGIEVYNSLVYVLTRENCLKEALK TIDKLKEQGLQPDYATFNSMILPLCEAGKLAEARIILNTMVDENISPTIETYHAFLEGTDYQGVLEFLSRMKGSGLGPNK DSFLIILVKFLKLKQPVNALNIWMEMKTYGVVPSCMHYQIMVEGLVTCKWFIKARDFYEEMISNGCSEDPKLNKLFEKEV LDSGDQGKQNVKKAKNVSILKSNKMKLKNS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Gene3D | 85 | 220 | 136 | 1.8E-13 | ||
ProSiteProfiles | 124 | 158 | 35 | 7.377 | ||
PANTHER | 129 | 376 | 248 | 7.2E-70 | – | |
PANTHER | 129 | 376 | 248 | 7.2E-70 | – | |
ProSiteProfiles | 193 | 223 | 31 | 7.18 | ||
Pfam | 197 | 216 | 20 | 0.1 | ||
Gene3D | 221 | 381 | 161 | 1.2E-32 | ||
PANTHER | 227 | 461 | 235 | 7.2E-70 | – | |
ProSiteProfiles | 227 | 262 | 36 | 9.361 | ||
PANTHER | 227 | 461 | 235 | 7.2E-70 | – | |
ProSiteProfiles | 263 | 297 | 35 | 12.101 | ||
Pfam | 265 | 404 | 140 | 4.6E-8 | ||
TIGRFAM | 266 | 297 | 32 | 1.6E-7 | ||
ProSiteProfiles | 298 | 332 | 35 | 9.679 | ||
TIGRFAM | 301 | 333 | 33 | 9.3E-5 | ||
ProSiteProfiles | 333 | 367 | 35 | 10.501 | ||
Gene3D | 382 | 486 | 105 | 6.7E-11 | ||
ProSiteProfiles | 399 | 433 | 35 | 7.848 | ||
ProSiteProfiles | 434 | 468 | 35 | 8.111 | ||
TIGRFAM | 438 | 467 | 30 | 4.7E-4 | ||
Pfam | 438 | 466 | 29 | 0.022 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0003600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…