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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0003600 |
| Transcript ID | LotjaGi3g1v0003600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT1G80880.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9SAH2|PP137_ARATH Pentatricopeptide repeat-containing protein At1g80880, mitochondrial; TrEMBL-Plants: tr|K7M423|K7M423_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0003600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:446717..453448) extracted from Lotus japonicus Gifu genome v1.2.
GGAGTATTCAGTCACCACACTACACTAAGGCAGCAATCCATCATCTAACACTCAACACTATAAACAATAAGCAGGTCGGT GAAGGTTCACTCCCACTTGTCAAAATGGCTCAACATTTACACCACTACTACCTTCACCTTTCAAGAGGATTGCATGCTAA TGCTATTGCAATTGTCAAACGTCCACACCATGTGGTTCCATTTACATTCTCCTTCTCTCAGGCATTTCATCAAACACCTT CATCACACTCTCACTCTCAGCCTCAGATTCAGCACACACCCTTCAACTTCAACTTCAACCTGGGTTTGGACGACCCAGCT CTACCCCAGTTCCTCGAATTGCTCAAAAATGAAGATCATTTCCTACCGCAAGAAGCAGATTTACGACCAAACAGAGATTT GATATGTTCTGCTATTTGGGCTTTGAGGGAAGAGTGGAAACCTGCGCTCCGAGCCTTCAAATTGATTGACTACGATGAGA AAGTTTGCAACTTGATCATATGGGTCTTGGGAACTCATGCAAAATTTTCCACTGCCTGGAGCATCATTCGGGAAATGCAT CGTTCTTCTCTGTCCACACGCCAGGCCATGCTTATTATGATTGATAGGTGAGGTAACATCAAACTCTATCTTTGAATTTC TGTTGAACTCTATCAAATTCTTATTTCTCCCGTTAGTATATTGAGATATGTGAAATCACGTTTGTGTTAGCATCGACGCA AAAACTAACATTTATTTAACCATGATAAGTTTCACCAATTAGTTAAGTTCCATATCAACTCTATTGATAACTGATGATTT TCATTTTCCCCCCTTTTTACTTGTGGCATTTTATTTCAATCAGATATGCAGCTGCAAATAACTCAGCCAAGGCTATTCAA ACATTCAATTTTATGGACAATTTCAGATTGAGTCCAGATCAGGAAGCATTCCATGCACTTTTGACTGCGCTTTGTAAATA TGGTAACGTCGAAGAGGCTGAAGAGTTTATGCTGGTGAACAAGAAGCTCTTCCCACTTGAGACAGAGAGCTTTAACATTA TTCTTAATGGATGGTGTAACATTACACATGATGTGTATGAAGCAAAAAGAGTTTGGAGGGAAATGTCAAAACAATGTATA ACACCAGATGCTACTTCATATAGCCACATGATTTCCTGCTTTTCAAAGGAAGGGAATCTCTTTGACTCTCTCAGACTCTA TGATCAGATGAAGAAAAGGGGATGGATCCCTGGGATAGAGGTTTATAATTCTTTAGTGTATGTTTTAACTCGTGAAAATT GCTTGAAGGAAGCTCTCAAGACCATAGATAAGTTGAAAGAGCAAGGTTTGCAGCCAGATTATGCCACCTTTAACTCCATG ATACTCCCTCTCTGTGAAGCTGGAAAACTAGCAGAGGCAAGAATAATATTAAACACAATGGTGGATGAGAATATCAGTCC AACCATTGAGACCTACCATGCTTTTTTGGAGGGAACAGATTACCAAGGAGTATTAGAATTTCTAAGTAGGATGAAAGGTT CTGGTTTAGGTCCAAATAAGGATTCCTTTCTCATAATTCTGGTAAAATTCTTAAAGTTGAAGCAGCCTGTAAATGCACTG AACATTTGGATGGAAATGAAGACGTATGGTGTGGTGCCCAGTTGTATGCATTACCAAATAATGGTTGAAGGGCTTGTAAC ATGTAAGTGGTTCATAAAGGCCAGGGATTTTTATGAGGAGATGATTTCAAATGGATGTTCAGAAGATCCAAAGCTTAATA AGCTCTTCGAGAAAGAAGTCCTTGACAGCGGTGATCAAGGAAAACAGAATGTAAAAAAGGCTAAAAATGTGAGCATTCTG AAAAGTAATAAGATGAAATTGAAAAATAGTTGAGACCTGTCAAGAAAGAAGGCATTGTCTAATTGTGGTGGGGTTTCTCG TAAAATTCACTTGGTCATATTCCTGGAAACTCAGGCACTCTGGCTGTAGCCCCTTGTCAACCTGTCCAAGTTTTGAATTT TATTATTGGAGCAGATGTACAGAAGACATGGAAGTGTTGGGTGAATCCATCGTTGTCTGATCTTCACATAAATACTTGAG GGTTTTGGTTGCTGCTGCATGCCCTGGACCTCATACTCCCTTGTTTTGATTGTGTGGTTCATATTTCAACAAAGCATGAA GTTCATATTCTGGTTTTGTTTCTTCCTGGAGTTCCCCATTGATGGTTGGTAAGCTATATCTTAACAAAATTGTGAAAATG AGTCTAATAGCACTCCCTCCCAACCTAATATCTATATAAAAAAGGAGCATATGTTATGCAATAACTAGTAACTACATGTT TTCTTCCGCAGTCTATTAGGTAAAGATAAATTTAGTTAAAGATTGATAGTATTTTAGCAGTTTTTATGTGCAAAACTGTA GTGTATTATATTCTCCTTCTGCTATATCATCAGGGAGCTATAATCGTGTCTTATATTGGGAGGACAGGTCTTCATATCAT GGTATTAGAGCCATACCATCCTTTGTGATCTCTCCAATCACAATTTAGCTGCTAAGTTCTTTAAAGTTTGGAACTATTAT AACAATAGATTCTTTCACAAATAAGCAATCTAATTGATCGTTGTTATCCCCGTTTTTTGAAGTATTCTAATTTTGTTTGT ATCTTTGCTTTTTGGGTTCCATCTGCTAGCGCTAACCCTTCATACATTGTCGTGGTTAGTACCCTTTTTTTGTTATTTAG TTTTAAGGTTTCAACTGCTGTTAGCGTTAGCTCTATAGTCATCAGGAGCCTCAGGTGACATAAGTTGTCTTAGTAGCCAC TGATCAACTGATCCTCAGTGTATCGTCATCTCCATCCAATGTTCTTAGGGCTTCAATCGCTATAAGTGTTGCCCCAATCA TCAGGTGCCCCCTTGTCAATCTTAAAAGCCATCAACTGACCGATCTCCCAAGCGTCTCCGCCAGATCCTGCCAGATGCTA TGCCATTCACCCCCAAGCTTTTGCCAGCGTGTGAGGTTGGTGCGCCACCTTAATGGCCTCTGTTGACGCTGCTTCTTTTA TGTCCTTGGCTCCTCTTGATTCTATTTTTGGTGTTTTTGTTTGTGGTTGTTGTTGTTTCACCCCTATTTTGTTTTTGGAC GTTGTTGGTTTTTAGCCCTAGCTCATAGTCTACTTTTGTTCCTTGAATTAGCTGACTTCACAACAATCTTAGAGAATCTG TTTGGCCTTACAACAACCCAAGATAATTAGTATGGCTCCATCATTATTTATCTTTTTTTTAAAGGATATATTTGTAACAA GCTATCAACTAAGTAAACTTTAGATTGAGGGAGTTGCTAGAATGTGTAAAGATATCTTACAAATATCTTGATTATATCGT TGAGTAGCTTCAACTAGATTATTATGTAAGATTAATTTCTTTATTTATATGGATTTGTTTCCATAGTTAATTAGGATTAG AAACCTTAATTAGTTTTCGTACCTGACTGAATTAGGAACCTTCACCACAATAAAAATAAGGGTGAACCTTTTGTCAAACC AACTAATGGGAATAATACCAAGGGACAGAATGAGCACTCTTGTCTAATGCGTACCGTTTTAATAGTGACACCTTTAGACT TTTTGATTCACACTGACTCCTGTGGTCCATAACTACATGACTAATCAACTAACAACATACCAGAAGAAGTGACTGTACAA TCAAATAATTTTTAGGTGTGAGAATTGTTTCTTAACCAAAAACCAACTTAGTTGTTAGCTCTCCAATATCTAGCCGACCA ATGCAGCAATGAATCTTTGTTGTAGTAGCTTATAGTGTCAAATCCAATTAGATGTGGTGTTATTGTTTTGTCTTCTTGTC TCGAGTAAGTTTGACTGCCATTTCACAAAGCCAATTCAGAAAGTTTTGGTGGATCATTGGACAGCATTCAGAAGCTTGAT TCGGTTTAACTACTGCTTTTGTTTTAGTATGTAAAAAATGGGATGCATATCAACATATGATGAACAGAGTGAAAATCACA ACAGAAGTAATTTTTTTTCTGAAGATAGAAAACGAATATACAATATCATTCTATCATAGTAAAAACTCAAGTGTGAGAAA GTCATGGAAAGCCTACCAAACTCAATCTCCTAAAAACAACTGCAACTAACACAAACCCTTTTGCTCTCATCTATTACAAT GAATAGCTAAGCTAACCATCCCAAACTCAGTTTACCTGTGACTCTTCGCTTCTGAGGGAGACAGTCAATGCAACATTCTA ATATAGCTAGCACACTGAGGACAAACAAGGAAATTGAGTCATCAAATCAAGTTGATGCAACTTTTATTGGAGAAATGCAC AAATAACTTATCTGATATACATTTTAAACATAAATCTCACAGCAAGTGTATTACTATTAGGTCCCAAATGCAAACATTTT TAATGATCTGTCCCATACTGCTCTCATCTTTACATGATCTTTACAAGAAACCTTCAATATTACAAAACCTATTCAGCATT CCCCTTCTGTTTCCTCCTTGATCTGCTGTATAATTTAGAAGGTGGAGAAGGAGAAAACTCAAATGGAAGTGGTGGAAGGG CCATTTCGCCTTTCAAAATCTTAACAATGTCCCGGATATCTGGCCGCAACTCTGGAATTTTCTGTAAGCAAGTTAGTGCC AAGTTGATGCACAAGCTTGCTTGGTCCTTGCTGTAATCTTCTTTCAATATTTCATCTACTAGCTCTAAAATGTTACCAGC TTGAGCTAAATTCCTACACCAGCTTATCAAGTTAGCTTTCTCTAGCTTCATGGGGGATGCAAGAACATGTAATGGTCTTC TACCTGACACAATTACTAGAACCAAAACTCCAAAACTGTAAATGTCAGCTTTCTCCATTAAGAACCCACACCCTCCATAT TCTGGTGCTACATAACACAGTGTCCCTCTCATGCTAGTTGTGCTGCTGAGCTCCCGGCTGAAAAGGTCTCCACTCCACAT GTCACTTCCAATGGAACGAGTGCTTTTTTTCTTCAAACCTCTTCTGAAGCTAAACTCCCCATTTTGATCACATTCATTCT GACCCTGCTCTCCACAGTTCTTACCTTGGCAAAGATAAAACCTTTTACCCAAATCAAAATGGGGCACTTTCAAGCCTTTT TTCCTCTTAGTTTTAAGACTTTTCATCTTACTAGTCTTTTTGCTTAATTCAGCAAGATGCTCTTCTTTCCACCACTCTTT CATCTTCCTTTGATTCTTCTTCTCCTTTGGTTCTTTCTTATCAAACACAACATTTGTATAACCAATACCATGTTCCTGTA GTTGGGGTCCATTAGCATCATCATCATTGGCTTTATTCATTGGACTTGAATTTTCCAATTCTGCTTTCTCCTGAGCATTG TTCTGACCATCATCCCAATCAGCGTTTGATGGACAAATCTGACTCCCTATCCACTCCATGACATAGTCTTTACTACATAG TTCTCCACTTTCATCTTGTCTCCACCACCAATCCTTTACCAAAGAAGCATTACCAGTCAACTCCTTACTATGATCAATGC TAGAAAACTCATCATCACAACGAACAAACTCATTATTCCAATCATCCTCTCCTATATCCACCACTGTTGAAATTTCCTTT CCCTTTGCATTTACAGTCTTACTTTCACTTTCACTGGCAATTTTGGCATTATAACTCAAAGAATCCAAGTTCAAAGTTCT AGCATTATAACAGGTCCTGCTATTTTTGGATGAAGAAGAAGCTTGCAAAGCTTGAGCAAAATCTACTTCATTAACACTAT CAACTGGAGTACCAATAACAGGAGTTTCTGCAGTTATATTACCTGAAAGTTCTTGGCTTTTACATAGGTCCTGGCTAAAG AAGTCCACACCATAATCACCCTCCACCTTAATCCTTGACAGCCCAAAATCTGAGATCTTTCCACAGTGCTCTGCATCAAG TAGAACATTGCTTGGCTTGATATCACCATGGATCACTGGAGGATCACATCCATGGTGCAAGAACTCCAATGCTCTAGCAA CATCCATGATTATGCAAAATCTTCTCTCCCAACTCAAACTCAAACACTCATCTCCAAAGAGGGACTCTTGCAAGCTTCTC TTAGGCATATACTCATACACCAAGACCCTTTTATTCTTTTCCACACAATACCCCAAAAGGGTCACCAGGAATGGCGATCT TAGCCCTCCAAGAATCTGCAGCTCATTTTGAAACTCTCTCTCTGTCTGCAAAGAGAAAGAGTCTAGGCACTTGACAGCAA TCAAGTTTCCATCTTTAAGCATTCCCTTAAAAACTGTGCCAGACCCACCTTTACCAATGACATTGGCAGTGTCAAAGCCA TTGGTAGCTTGCTTTAAATCTTTGTATGAGAATCTCAGGAGCTTCAAGGGATCACTTGCATCAAAGGGTATAGTTTTGGT TCTGTGTAGAAGAGAATGCCACAGATGGTAAAGGAAGTAAAGGACAGAACAGAAAATCACAATAGAAGCTGAAAGGGTCA GTGCTATGAACAGGACTCTGGTTTTGGTGAAAAAACTGGGACCTGGAGAAGGGAAGGGTCGGGAAGGCATGGCGTGTGGA TGAATGCTGATCACAGCAACTGATGATGATGAAAAAGGAGAAGAAAAGGTGAATGAAGAAGAAGAGGGAGATGGGCATTC TGGTTATCCATTTTTGTTTCTCTTTGTATTATGAATGGGTATCCATTCCAAAGTGGGGTTTGCTTTACAATTAGTTAATC ATTAGAGGAGGA
CDS sequence (LotjaGi3g1v0003600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCAACATTTACACCACTACTACCTTCACCTTTCAAGAGGATTGCATGCTAATGCTATTGCAATTGTCAAACGTCC ACACCATGTGGTTCCATTTACATTCTCCTTCTCTCAGGCATTTCATCAAACACCTTCATCACACTCTCACTCTCAGCCTC AGATTCAGCACACACCCTTCAACTTCAACTTCAACCTGGGTTTGGACGACCCAGCTCTACCCCAGTTCCTCGAATTGCTC AAAAATGAAGATCATTTCCTACCGCAAGAAGCAGATTTACGACCAAACAGAGATTTGATATGTTCTGCTATTTGGGCTTT GAGGGAAGAGTGGAAACCTGCGCTCCGAGCCTTCAAATTGATTGACTACGATGAGAAAGTTTGCAACTTGATCATATGGG TCTTGGGAACTCATGCAAAATTTTCCACTGCCTGGAGCATCATTCGGGAAATGCATCGTTCTTCTCTGTCCACACGCCAG GCCATGCTTATTATGATTGATAGATATGCAGCTGCAAATAACTCAGCCAAGGCTATTCAAACATTCAATTTTATGGACAA TTTCAGATTGAGTCCAGATCAGGAAGCATTCCATGCACTTTTGACTGCGCTTTGTAAATATGGTAACGTCGAAGAGGCTG AAGAGTTTATGCTGGTGAACAAGAAGCTCTTCCCACTTGAGACAGAGAGCTTTAACATTATTCTTAATGGATGGTGTAAC ATTACACATGATGTGTATGAAGCAAAAAGAGTTTGGAGGGAAATGTCAAAACAATGTATAACACCAGATGCTACTTCATA TAGCCACATGATTTCCTGCTTTTCAAAGGAAGGGAATCTCTTTGACTCTCTCAGACTCTATGATCAGATGAAGAAAAGGG GATGGATCCCTGGGATAGAGGTTTATAATTCTTTAGTGTATGTTTTAACTCGTGAAAATTGCTTGAAGGAAGCTCTCAAG ACCATAGATAAGTTGAAAGAGCAAGGTTTGCAGCCAGATTATGCCACCTTTAACTCCATGATACTCCCTCTCTGTGAAGC TGGAAAACTAGCAGAGGCAAGAATAATATTAAACACAATGGTGGATGAGAATATCAGTCCAACCATTGAGACCTACCATG CTTTTTTGGAGGGAACAGATTACCAAGGAGTATTAGAATTTCTAAGTAGGATGAAAGGTTCTGGTTTAGGTCCAAATAAG GATTCCTTTCTCATAATTCTGGTAAAATTCTTAAAGTTGAAGCAGCCTGTAAATGCACTGAACATTTGGATGGAAATGAA GACGTATGGTGTGGTGCCCAGTTGTATGCATTACCAAATAATGGTTGAAGGGCTTGTAACATGTAAGTGGTTCATAAAGG CCAGGGATTTTTATGAGGAGATGATTTCAAATGGATGTTCAGAAGATCCAAAGCTTAATAAGCTCTTCGAGAAAGAAGTC CTTGACAGCGGTGATCAAGGAAAACAGAATGTAAAAAAGGCTAAAAATGTGAGCATTCTGAAAAGTAATAAGATGAAATT GAAAAATAGTTGA
Protein sequence (LotjaGi3g1v0003600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAQHLHHYYLHLSRGLHANAIAIVKRPHHVVPFTFSFSQAFHQTPSSHSHSQPQIQHTPFNFNFNLGLDDPALPQFLELL KNEDHFLPQEADLRPNRDLICSAIWALREEWKPALRAFKLIDYDEKVCNLIIWVLGTHAKFSTAWSIIREMHRSSLSTRQ AMLIMIDRYAAANNSAKAIQTFNFMDNFRLSPDQEAFHALLTALCKYGNVEEAEEFMLVNKKLFPLETESFNIILNGWCN ITHDVYEAKRVWREMSKQCITPDATSYSHMISCFSKEGNLFDSLRLYDQMKKRGWIPGIEVYNSLVYVLTRENCLKEALK TIDKLKEQGLQPDYATFNSMILPLCEAGKLAEARIILNTMVDENISPTIETYHAFLEGTDYQGVLEFLSRMKGSGLGPNK DSFLIILVKFLKLKQPVNALNIWMEMKTYGVVPSCMHYQIMVEGLVTCKWFIKARDFYEEMISNGCSEDPKLNKLFEKEV LDSGDQGKQNVKKAKNVSILKSNKMKLKNS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 85 | 220 | 136 | 1.8E-13 | ||
| ProSiteProfiles | 124 | 158 | 35 | 7.377 | ||
| PANTHER | 129 | 376 | 248 | 7.2E-70 | – | |
| PANTHER | 129 | 376 | 248 | 7.2E-70 | – | |
| ProSiteProfiles | 193 | 223 | 31 | 7.18 | ||
| Pfam | 197 | 216 | 20 | 0.1 | ||
| Gene3D | 221 | 381 | 161 | 1.2E-32 | ||
| PANTHER | 227 | 461 | 235 | 7.2E-70 | – | |
| ProSiteProfiles | 227 | 262 | 36 | 9.361 | ||
| PANTHER | 227 | 461 | 235 | 7.2E-70 | – | |
| ProSiteProfiles | 263 | 297 | 35 | 12.101 | ||
| Pfam | 265 | 404 | 140 | 4.6E-8 | ||
| TIGRFAM | 266 | 297 | 32 | 1.6E-7 | ||
| ProSiteProfiles | 298 | 332 | 35 | 9.679 | ||
| TIGRFAM | 301 | 333 | 33 | 9.3E-5 | ||
| ProSiteProfiles | 333 | 367 | 35 | 10.501 | ||
| Gene3D | 382 | 486 | 105 | 6.7E-11 | ||
| ProSiteProfiles | 399 | 433 | 35 | 7.848 | ||
| ProSiteProfiles | 434 | 468 | 35 | 8.111 | ||
| TIGRFAM | 438 | 467 | 30 | 4.7E-4 | ||
| Pfam | 438 | 466 | 29 | 0.022 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0003600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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