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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0006100 |
| Transcript ID | LotjaGi3g1v0006100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing family protein; TAIR: AT1G80550.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9M8M3|PP136_ARATH Pentatricopeptide repeat-containing protein At1g80550, mitochondrial; TrEMBL-Plants: tr|G7IMC4|G7IMC4_MEDTR PPR containing plant-like protein; Found in the gene: LotjaGi3g1v0006100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:767141..769552) extracted from Lotus japonicus Gifu genome v1.2.
GAGTGTGGAGTGAAACAGAGCAAACAACACAATGCGTAGGTTGATTCCCCTTTCTTCTTCAACTCGACTTCGCCTCTTTC TAACCCAACAACGCTATCATTCCACACAAAACGCACCATCTCACACTCCAGTTCCTGAAGATCCCATCCATGTCGACACC ACCACCGTTCGCGAAACCCTCATCTCCTTCAACAACGACTGGAACCGCGCCCTCGAGTTTTTCAACTGGGTCGAGACCCA ACACCATTTCCTCCACACCACAGAAACCTTCAACCTCACCATCGACATCCTCGGGAAATTCTTCGAGTTTTCCCAATGTT GGAACCTCATTCACCGCATGCGGAACCACCCTTCTTCCTCCCCTGACCACACCACGTTCCGTGTCATGTTCAAGCGCTAT GTCTCCGCTCACGAAGTCAATGAAGCCATTCGCACCTATGAGCGACTCAGCGAGTTTAACTTGAAGGATGACACCTCCTT CTCCAACCTAATCGATGCTCTCTGTGAGTACAAGCATGTTCTCGAGGCGCAGGATTTGATTTTCGGCGAAAACAAGACAT GGGGTCATGGGGTGGTGGGAGTGGGGACGACGAAGATCTACAACATGGTTCTTCGTGGGTGGTTCAAGTTGGGGTGGTGG AAGAAATGCAATGAGTTTTGGGAGGAGATGGATAAGAAAGGGGTTGAGAAGGATCTTCATTCTTATTCAATTTACATGGA TATTTTGAGCAAAGGGGGGAAGCCATGGAAGACTGTGAAGCTTTTTAAGGAGGTGCAGAGAAAAGGTATTAAATTGGATG TTGTTGCCTATAACATTTTCATTAGAGCCATTGGTCAATCTCAAGGGGTTGATTTCGCGATCAGGGCCTTCCGTGAAATG AAGGAATCAGGAATCAACCCTACTGTTGTCACTTACAATACTATCATTAGGCTTTTGTGTGATAGCTATAGAATTAAGGA GGCACTTGCATTGCTTCGTACTATGCGTGATGATAATTGCCAGCCTAATGCTGTTTCTTATCATTGCTTTTTTGCTTGCC TGGAGAAGCCTAATCAGATAATTGACTTGTTTGATAGAATGGTTGAAAGTGGAGTTCGTCCTCGTATGGACACCTATGTC ATGCTGTTGAGCAAGTTTGGGAGGTGGGGATTTCTGAGGCCGGTCTTTGTAGTGTGGGATCAAATGAAAAAATTTGGATG TAGTCCAGATGCAGATGCTTACAATGCGTTGATAGGTGCTCTTGTGGAAAAGGGCCAGATAGATCTGGCAAGGAAGTATG ATGAAGAGATGTTGCTCAAAGGACTTTCACCTAAGCCTAGGAAAGAGTTGGGGACAAAGCTTCTAGGAGGAGAACCTACT GATGAATAACTCTTATGCAAGCATACAGATACACAAGTGTAATACATTCAGAGGATATTGAAGTTCAGCGGCTTTAAACA TTGGAAGCATGTGAGCGGTGTTATAGTGTGTTTCATTCTGTGGTAGGAATAGGAACCCCATAATCACTTTTTGGGAGAAG CTACAAAGTGTAGCTTCTGGAGTTATTACATGTAGATAACATTACCCATCAATATCAAGAAATTTTGGCATGACATAACC ACTTTTTGAATTCTAACACACTTTTTTTCTTGTTCCCTCCTTATTTTAACCTCATTGCTCTTGTTCTTTTTGCTTTCCTC ATGCAGATCGGAATTATCTGACCATCCCCTATAGCAATTGTGGTCACTGTATTGATATTAGGAAGCTACCTTCCCCTTCA CATCTGGAGGCATTATGATATTTCTTAACCTCAAACTCAGCTCATCTCTTCCCCTTACAATTTATTTCCTCATAGTGGAC CTTGTTTCGCAATTCTGTCTAGGCTTGAACAGGTTGGGAAAGTGTCCAATCTTTGTGGCAATATGTAGCCTTGTTTCTTC ATCTGTATCTATAACATGTCACGATGGGCTTGAGGGGCTTCAGTCAGTTCTCTGCACATTTGGTTCTCCGTCTGGCTGGG CTGTCAAGTACCTTTGACTTGCACCCATATGCACATAGGGGTCCAAGGGTGATTGCTGGTCTCCCACAACATTTTTCATC TCAGAAGTCATAGTCATGTCACGGTGGCTTCTCTGATGCTTATCTTTACAGTTGTTGGCTCCAGTAAGTATATTGAGTTC TACACTGGAAGACGAATATTACTTTAGAGCAAAGAATGCTTTCGGCTCAGAATATGGTTTTAATTATTCATTGTGGTAAT GGGAATTTTCGGCTGGAAATTGATTGTTTTTACTTAGGTAACTAACTGCATTTTAATGTTCTGTTTTCTAAGCATTGTTT TTAGTCCATGTTGTTTGTGATGCATATGACTTGGAAGTATAGGTATGTTACATTGCAATAGTTATTTCAATTAGAAGTAT AGTTATTTTTCA
CDS sequence (LotjaGi3g1v0006100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCGTAGGTTGATTCCCCTTTCTTCTTCAACTCGACTTCGCCTCTTTCTAACCCAACAACGCTATCATTCCACACAAAA CGCACCATCTCACACTCCAGTTCCTGAAGATCCCATCCATGTCGACACCACCACCGTTCGCGAAACCCTCATCTCCTTCA ACAACGACTGGAACCGCGCCCTCGAGTTTTTCAACTGGGTCGAGACCCAACACCATTTCCTCCACACCACAGAAACCTTC AACCTCACCATCGACATCCTCGGGAAATTCTTCGAGTTTTCCCAATGTTGGAACCTCATTCACCGCATGCGGAACCACCC TTCTTCCTCCCCTGACCACACCACGTTCCGTGTCATGTTCAAGCGCTATGTCTCCGCTCACGAAGTCAATGAAGCCATTC GCACCTATGAGCGACTCAGCGAGTTTAACTTGAAGGATGACACCTCCTTCTCCAACCTAATCGATGCTCTCTGTGAGTAC AAGCATGTTCTCGAGGCGCAGGATTTGATTTTCGGCGAAAACAAGACATGGGGTCATGGGGTGGTGGGAGTGGGGACGAC GAAGATCTACAACATGGTTCTTCGTGGGTGGTTCAAGTTGGGGTGGTGGAAGAAATGCAATGAGTTTTGGGAGGAGATGG ATAAGAAAGGGGTTGAGAAGGATCTTCATTCTTATTCAATTTACATGGATATTTTGAGCAAAGGGGGGAAGCCATGGAAG ACTGTGAAGCTTTTTAAGGAGGTGCAGAGAAAAGGTATTAAATTGGATGTTGTTGCCTATAACATTTTCATTAGAGCCAT TGGTCAATCTCAAGGGGTTGATTTCGCGATCAGGGCCTTCCGTGAAATGAAGGAATCAGGAATCAACCCTACTGTTGTCA CTTACAATACTATCATTAGGCTTTTGTGTGATAGCTATAGAATTAAGGAGGCACTTGCATTGCTTCGTACTATGCGTGAT GATAATTGCCAGCCTAATGCTGTTTCTTATCATTGCTTTTTTGCTTGCCTGGAGAAGCCTAATCAGATAATTGACTTGTT TGATAGAATGGTTGAAAGTGGAGTTCGTCCTCGTATGGACACCTATGTCATGCTGTTGAGCAAGTTTGGGAGGTGGGGAT TTCTGAGGCCGGTCTTTGTAGTGTGGGATCAAATGAAAAAATTTGGATGTAGTCCAGATGCAGATGCTTACAATGCGTTG ATAGGTGCTCTTGTGGAAAAGGGCCAGATAGATCTGGCAAGGAAGTATGATGAAGAGATGTTGCTCAAAGGACTTTCACC TAAGCCTAGGAAAGAGTTGGGGACAAAGCTTCTAGGAGGAGAACCTACTGATGAATAA
Protein sequence (LotjaGi3g1v0006100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRRLIPLSSSTRLRLFLTQQRYHSTQNAPSHTPVPEDPIHVDTTTVRETLISFNNDWNRALEFFNWVETQHHFLHTTETF NLTIDILGKFFEFSQCWNLIHRMRNHPSSSPDHTTFRVMFKRYVSAHEVNEAIRTYERLSEFNLKDDTSFSNLIDALCEY KHVLEAQDLIFGENKTWGHGVVGVGTTKIYNMVLRGWFKLGWWKKCNEFWEEMDKKGVEKDLHSYSIYMDILSKGGKPWK TVKLFKEVQRKGIKLDVVAYNIFIRAIGQSQGVDFAIRAFREMKESGINPTVVTYNTIIRLLCDSYRIKEALALLRTMRD DNCQPNAVSYHCFFACLEKPNQIIDLFDRMVESGVRPRMDTYVMLLSKFGRWGFLRPVFVVWDQMKKFGCSPDADAYNAL IGALVEKGQIDLARKYDEEMLLKGLSPKPRKELGTKLLGGEPTDE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 37 | 173 | 137 | 2.3E-16 | ||
| ProSiteProfiles | 76 | 110 | 35 | 5.919 | ||
| ProSiteProfiles | 112 | 146 | 35 | 7.629 | ||
| PANTHER | 149 | 333 | 185 | 1.5E-68 | – | |
| PANTHER | 149 | 333 | 185 | 1.5E-68 | – | |
| Gene3D | 183 | 251 | 69 | 1.3E-10 | ||
| ProSiteProfiles | 186 | 220 | 35 | 9.756 | ||
| PANTHER | 186 | 427 | 242 | 1.5E-68 | – | |
| PANTHER | 186 | 427 | 242 | 1.5E-68 | – | |
| TIGRFAM | 189 | 221 | 33 | 1.3E-5 | ||
| Pfam | 189 | 218 | 30 | 9.1E-4 | ||
| ProSiteProfiles | 221 | 255 | 35 | 9.361 | ||
| Pfam | 243 | 302 | 60 | 3.7E-15 | ||
| Gene3D | 252 | 322 | 71 | 1.1E-17 | ||
| ProSiteProfiles | 256 | 290 | 35 | 11.137 | ||
| TIGRFAM | 258 | 291 | 34 | 2.9E-4 | ||
| ProSiteProfiles | 291 | 325 | 35 | 11.477 | ||
| TIGRFAM | 293 | 327 | 35 | 1.2E-7 | ||
| Gene3D | 335 | 431 | 97 | 3.6E-17 | ||
| Pfam | 346 | 406 | 61 | 2.5E-8 | ||
| ProSiteProfiles | 358 | 392 | 35 | 8.802 | ||
| TIGRFAM | 361 | 394 | 34 | 1.5E-4 | ||
| ProSiteProfiles | 393 | 427 | 35 | 10.709 | ||
| TIGRFAM | 396 | 427 | 32 | 0.0019 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0006100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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