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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0010400 |
| Transcript ID | LotjaGi3g1v0010400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT1G80150.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q8GW57|PP134_ARATH Pentatricopeptide repeat-containing protein At1g80150, mitochondrial; TrEMBL-Plants: tr|A0A1J7GTG9|A0A1J7GTG9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0010400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:1146791..1150219) extracted from Lotus japonicus Gifu genome v1.2.
TTCTCTAACTCTCTCTGAAAATGGGGCAATCGAAAACCCCATCACTCAATGGTGGCGCTTCCCCTAAACCCTACCTCCTC CTCCGCCACAACCACCACCGTCTCCTCCGCCGTCAATCCCGACGAGCATGATCTTCATCCACTCTCTCTCTCACCTTGAT CATGCTCTCCCTGCGATCCACTCGCAGGCTCCGCAACTTCACCACCTCCGCCGTTTCCGCCGCCGCCGCCAAAAATCCCT TACAACCCCCTGCTCTCGACAAGCTCAAAGCGGAGCGTGATCCACACAAGCTCTTCCTCCTCTTCAAAGCCAATGCCACC AACCGCCTCCTCATCGAGAATCGCTTCGCCTTCGACGACACCGTTTCGCGCCTCGCCGGCGCTCGCCGCTTCGACTACAT TGAGCAGCTTCTCGAGCAGCAGAAGAAACTCCCCCAAGCTCGCCGTGAAGGCTTCATCGTCAGAATCATCGGGCTCTACG GGAAGGTTGGTATGACCCAACACGCACTTGAAACTTTCTACCATATGGATTCTTCTCGTAGAACTGTTAAGTCTTTTAAT GCTACTCTTAAGGTTTTGGCTCAGACAAAGCATTTTGACTATGTTGTTGAGTTTTTGGAACAAGCTTCTTTGAAATTCGA CATTCGATTAGATGTTTATTCTATCAACATTGTTGTTAAGGCTTTTTGTGATATGGGGAAGTTGCAAGAGGCTTATTTGT TTATGTTAGAGTCGGAAAACGATAAGGGTATTCGACCGGATGTTGTTACGTATACTACTCTTATCGCTGCGTTTTACCAG CATAGGAGGTGGGAGATTGGGAATGGGTTGTGGAACCGTATGGTGTTGAAGGGTTGTATGCCGAATCTGACTACGTTTAA TGCTCGGGTTCATTTTTTGGTTTGTGCGAGACGGGCTTGGGATGCTAATGCTGTGATGGGTTTGATGGAGAGAGTTGGGA TTAAACCGGATGAGGTTACCTTTAATTTGGTGATCAAGGGTTTTTTCCTGGCGGGTTTTGTTGATATGGCGAAGAGGGTT TATTCTGCTCTGCACGGGAAGGGGTATAAGCCTAATTCTTTGATTTACCAGACTATGATTCATTATTTGTGCAAGAGTGG GGATTTTGATTTGGCATATACCATGTGCAAAGATTCTATGCTGAAGAACTGGTTTCCGAATGTAGATACAATCTGTATGC TGCTGGTAGGCCTAAAAAGAAATGGGAAGGTTCAGAAAGCAACGATTATATTTACGCTGGCCAAGAGTAGAAAGCCTCCC TTCTCTTCCAGTCATTTGGCTTCCATGCAGACCATGTTGTCCAGGGGTTCAACATGAACAGACTTTCATGAAATCTATAA GAAAAAAATTGTTCATTTTTTGTCTTGAAGTGTGTGCTATCATCACTGAGGCCACGGATATCCAAACAAAGCTTTGAGTT AGTGTATTAGGTGGACAGGAAATCAGCTATCCAAACATAGCCTCAGTTAGTGGAATAGGTAAACAGGAAATCGGCTGACT TTTATGAGACAACAGCCCCAATGGATCTGATATTCTTTTTATTCCATTCATTTGTACATCTTGAAAATTTTAACAAGCCT GAAATTTGATGGCATTTCATCCAGGCCAGCAGTCAAACACTAGTTAGTTTCCACTCAGTTAGTTTGTTGTACCATCCTTC GTCCTTCATAATATTTCAGCCAAGATGATTGTTCAAGAGGCAAATACCATATAAACTATTGTAAGTTCTATCTCCTCTTC CGTTCAACATCCTTTCTTTGTGTCACACACATGCACCAATTTTGTGATTATCTATATTGCAGACAATCTTGGATTGTTAT GAAGGTTCTATATGCTATTCTGTTCCACCTCTTTCATTAAAAAAAAGAATACTGTTGTATGATTTAATCATGAAGCAAAT CTTTTTATGAGCTTCAATTGTAATAAATCAAATATCCATTTTATTTGCTATGGCTTACATGTTTAGGGCAGACTTGTTTA AGGAACATGCATATTTATGAGTATATATATTGATTGATTATATGAATGCCAATTTTAACAGTTGTTTTTCTTAACATAGT TATGTAGTACTCACTGATTTCAGAATCATGGTGAAGAACACAACATTCATTATAAATAGGTGACTTTTATCCTTATTGGA TATCAATGATCAGATATAAACCTTCATAACATTTTCTTTTTAAAATTACATTTTGATTCATATGACAATTGTTTTTCGGA TAGATATGCTTGTTTGCTTTCATGTTTTTTATATTTCCTTATACTGGTGATGTGCTGTAGGTTCATTTTTAGCTGCACTG AGCATAACGATAAGTATGCAATGGGCTTAATGAGGTACATGTGGAGTGAACAGGTTTCCAGAGATGGTTTTATGCTTTAG AGCATGGATCTTACTTTTTGCTTATTATCTGCTTTGGGTTGATGACGGATAATAGCTGGATTTCCACCTGGTTTTAAGGT ATCCTCTTGTTTATGTCTCCAATCAAAGCTGTTGTTTTAAAGAATAATCAATTTATTTGTCTGGGTAGACAAGTTTGGTT GAGGTGTATTGGAGAAGTTGCATTATCATTCTGCAGTTCTGCTATGAAAACTATTGTGAAGGGCATGGGAGGGACAAAGG AATATTGCACAGGAAGACTGATTTTCAATTTTGTGATTGTCCATAGACATGAGACATCCGGTATATGGCAGTGTTATCAA ATATCGGCCATGGAGGCACGATGGCAGAATCTCATGCCGGGTTATTGGCTCTCCGCCATGGCCGATATCCTGTCATAATC CGCCATCATTATTTGTCGAACATGGCAGGGTTTTTGCTCTCCGCCATCCGCCATCCGCCATTAACAACATTTGTATACGG CCATGGTTAGAACATCTTGACCAAAAAGGAATAATGAACACATGGTGGAGAATCCTGTGCAGTTTCGCATGGGTCTGTTG TGGTGACATAGTTGCTGGTTGTTTCCAGTTGCGCAGCCATGGACCAAGAGCATGAACGCTATCAACTGCAATGGGCTTTT GCTTCACTTTTTGTCTTTATTCAATGGGAAGAGAATTTACTGAAAGTGGGAATTGCTCCTGATGAGGTTACCTTCAACCA GGTCTGTGAAGACAAAGCAATATACTGAAAGAGCAATGCTAGCTAGAAAGATTACCAGAATTTTGACAGAATAAAATTGT GATTGTTTGATGGAATGAAGTGGTAAAGAACTACTCATTCACAAATCAATAAGCATACCGTATCACTTTGGCTAGAAGAT TCTAATATAAATTTTGGCACTAGTATTTTTTTTTCCAAGATAAAACATGGCAATCTTAATCCCTATTCCTTTCTGAGAAA CAAGTAGCTTGAAAGCATGCGAAGTTTATCAGTTGTTCGTATCAATATTAATTTTTTAAAATCATCAAA
CDS sequence (LotjaGi3g1v0010400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTCTCCCTGCGATCCACTCGCAGGCTCCGCAACTTCACCACCTCCGCCGTTTCCGCCGCCGCCGCCAAAAATCCCTT ACAACCCCCTGCTCTCGACAAGCTCAAAGCGGAGCGTGATCCACACAAGCTCTTCCTCCTCTTCAAAGCCAATGCCACCA ACCGCCTCCTCATCGAGAATCGCTTCGCCTTCGACGACACCGTTTCGCGCCTCGCCGGCGCTCGCCGCTTCGACTACATT GAGCAGCTTCTCGAGCAGCAGAAGAAACTCCCCCAAGCTCGCCGTGAAGGCTTCATCGTCAGAATCATCGGGCTCTACGG GAAGGTTGGTATGACCCAACACGCACTTGAAACTTTCTACCATATGGATTCTTCTCGTAGAACTGTTAAGTCTTTTAATG CTACTCTTAAGGTTTTGGCTCAGACAAAGCATTTTGACTATGTTGTTGAGTTTTTGGAACAAGCTTCTTTGAAATTCGAC ATTCGATTAGATGTTTATTCTATCAACATTGTTGTTAAGGCTTTTTGTGATATGGGGAAGTTGCAAGAGGCTTATTTGTT TATGTTAGAGTCGGAAAACGATAAGGGTATTCGACCGGATGTTGTTACGTATACTACTCTTATCGCTGCGTTTTACCAGC ATAGGAGGTGGGAGATTGGGAATGGGTTGTGGAACCGTATGGTGTTGAAGGGTTGTATGCCGAATCTGACTACGTTTAAT GCTCGGGTTCATTTTTTGGTTTGTGCGAGACGGGCTTGGGATGCTAATGCTGTGATGGGTTTGATGGAGAGAGTTGGGAT TAAACCGGATGAGGTTACCTTTAATTTGGTGATCAAGGGTTTTTTCCTGGCGGGTTTTGTTGATATGGCGAAGAGGGTTT ATTCTGCTCTGCACGGGAAGGGGTATAAGCCTAATTCTTTGATTTACCAGACTATGATTCATTATTTGTGCAAGAGTGGG GATTTTGATTTGGCATATACCATGTGCAAAGATTCTATGCTGAAGAACTGGTTTCCGAATGTAGATACAATCTGTATGCT GCTGGTAGGCCTAAAAAGAAATGGGAAGGTTCAGAAAGCAACGATTATATTTACGCTGGCCAAGAGTAGAAAGCCTCCCT TCTCTTCCAGTCATTTGGCTTCCATGCAGACCATGTTGTCCAGGGGTTCAACATGA
Protein sequence (LotjaGi3g1v0010400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLSLRSTRRLRNFTTSAVSAAAAKNPLQPPALDKLKAERDPHKLFLLFKANATNRLLIENRFAFDDTVSRLAGARRFDYI EQLLEQQKKLPQARREGFIVRIIGLYGKVGMTQHALETFYHMDSSRRTVKSFNATLKVLAQTKHFDYVVEFLEQASLKFD IRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLKGCMPNLTTFN ARVHFLVCARRAWDANAVMGLMERVGIKPDEVTFNLVIKGFFLAGFVDMAKRVYSALHGKGYKPNSLIYQTMIHYLCKSG DFDLAYTMCKDSMLKNWFPNVDTICMLLVGLKRNGKVQKATIIFTLAKSRKPPFSSSHLASMQTMLSRGST
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 21 | 21 | - | – | |
| PANTHER | 16 | 383 | 368 | 1.2E-186 | – | |
| PANTHER | 16 | 383 | 368 | 1.2E-186 | – | |
| Pfam | 102 | 124 | 23 | 1.3 | ||
| Gene3D | 114 | 246 | 133 | 8.7E-25 | ||
| ProSiteProfiles | 128 | 163 | 36 | 5.316 | ||
| ProSiteProfiles | 164 | 199 | 36 | 9.383 | ||
| Pfam | 199 | 240 | 42 | 8.0E-10 | ||
| ProSiteProfiles | 200 | 234 | 35 | 10.852 | ||
| TIGRFAM | 202 | 235 | 34 | 3.4E-5 | ||
| ProSiteProfiles | 235 | 269 | 35 | 7.585 | ||
| Gene3D | 247 | 390 | 144 | 1.3E-23 | ||
| Pfam | 266 | 293 | 28 | 1.5E-5 | ||
| ProSiteProfiles | 270 | 304 | 35 | 10.337 | ||
| TIGRFAM | 272 | 305 | 34 | 1.1E-4 | ||
| Pfam | 300 | 328 | 29 | 1.9E-5 | ||
| ProSiteProfiles | 305 | 339 | 35 | 8.616 | ||
| TIGRFAM | 308 | 340 | 33 | 4.6E-5 | ||
| ProSiteProfiles | 340 | 374 | 35 | 5.842 | ||
| MobiDBLite | 372 | 391 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0010400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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