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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0016200 |
| Transcript ID | LotjaGi3g1v0016200.2 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT3G16010.1 Pentatricopeptide repeat (PPR-like) superfamily protein; Swiss-Prot: sp|Q9LW84|PP236_ARATH Pentatricopeptide repeat-containing protein At3g16010; TrEMBL-Plants: tr|G7II50|G7II50_MEDTR PPR containing plant-like protein; Found in the gene: LotjaGi3g1v0016200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:1696278..1699956) extracted from Lotus japonicus Gifu genome v1.2.
GTGAAATGTGAATTGATCATTTTTCAATCCCTTTGCAGTTCATGCGAAACCAAAACTGAACTCTGTCCCTTTACTCAGTG AAAGTGGTTCCTCCGAGTTAATACGTTGTTGTTCCAACTTCCAAGCAAAGGTTTAAGATATTGTTTCATAACCCTCAGAA CCGCGAAAAATGCTTCCTGGATCCAGTGCTACAAGAAGAAGCATATCAACTTCCCCTCTTCTCTCTCAGAGATTAAAGCA AACAGGTGGGGTGCATCCATCGTTTCACCGTTTATCATTGATTCTGCAAATGAAGTTTGATTTGATTGTGTTTAACTTCA TAATATCTTATCTAATTGTTTGCAGAAAATGAGATTGTCAAAATGTTTAGCATGCCTAACCCCGAAGAAGAAGAAAACCA CAGCATTCCCATGAGAGGAGGGAGCAGCGTGTTGAGGAGAAGCCCCAACAATGCTCGGGTATTGGATGAGAGATTCATCA GGATTTTGAAAATATTCAAATGGGGACCTGATGCAGAAAAGGCATTGGAAGTGCTGAAGCTGAAGCTTGATGCACGCTTG GTTCGCGAGATTTTGAAGATAGATGTTGAGGTCAATGTGAAGATTCAGTTCTTCAAGTGGGCTGGGAAGAGAAGGAACTT TGAGCATGATTTGACGACGTACATGGCTTTGATACGGTGTTTGGATGAGCATAAGCTGTTTGGTGAAATGTGGAAGACGA TACAGGAGATGGTGAAGAGCGCGTGGTGCGCGATTGGTCCTACTGAGTTGTCTGAGGTTGTGAGAATCTTGGGCAGGGCT AAGATGGTTAACAAGGCGTTGTCTGTGTTTTATCAGGTGAAGGCTCGAAAGTGCAGACCTACAGCTAGCACTTACAACTC TGTTATTTTGATGTTGATGCAAGAGGGGCATCTTGAGAAAGTTCACGAGCTGTATAATGAGATGTGCACCGAGGGTCATT GTTATCCTGACACGGTCACGTATAGTGCGCTTGTGTCAGCATTTGCGAAGCTTAATCGTGACGATTCTGCTATTAGGTTG TTTGATGAGATGAAGGAGAATGGATTGCAGCCCACAGAGAAAATTTATACGACGTTAATGGGAATATACTTTAAGTTGGG TAGGGTTGATGAAGCTCTGGGCCTAGTCCATGAGATGAGAATGCGGCGGTGTTCCCCGACTGTATTTACCTACACTGAAT TGATAAGGGGTTTGGGAAAATCTGGGAGGGTCGAAGACGCGTACATGATATACAAGAATATGCTAAAAGATGGTTGTAAA CCTGATGTTGTTCTGATGAATAATTTGATTAACATTTTGGGTAGATCAGATCATTTAAAAGATGCTCTTCAGCTTTTTGA TGAAATGAAATTGCTGAATTGCACACCCAATGTGGTGACATATAATACCATCATCAAATCCTTATTTGAGTCCAAAGCTC CTCCTTCTGAGGCTTCTTTATGGTTTGAGAGGATGAAAAAAGATGGAGTTTCCCCCAGCTCATTTACTTATTCAATTCTC ATTGATGGTTTCTGCAAAACAAATAGAGTTGAGAAGGCTTTGTTACTTCTTGAGGAGATGGATGAAAAAGGTTTTCCACC TTGTCCTGCTGCCTACTGCAGCCTAATCAATAGCCTTGGAAAAGCAAAGCGCTATGAGGCTGCAAATGAACTATTCCAGG AATTAAAAGAGAACTGTGGACGTTCAAGTGCTCGTGTGTATGCTGTAATGATTAAGCATTTTGGAAAGTGTGGGCGGTTT AATGAAGCTGTCAATCTTTTTAATGAGATGAAAAAACTTGGATGCATCCCTGATGTCTATGCTTATAATGCTCTCATGAC TGGGATGGTAAGGGAAGACATGATGGATGCCGCTTTTTCCTTGTTTAGAACCATGGAAGAAAATGGCTGTACCCCAGATA TAAATTCTCATAACATTATCTTAAACGGCTTAGCTAGGACTGGTGGTCCAAAGCGTGCTATGGAAATGTTTACAAAAATG AAGAGTTCTGCTATTAAGCCAGATGCGGTTTCTTACAACACAATTCTTGGTTGTCTTAGCCGAGCAGGTCAGTTTGAAGA GGCTGCAAAACTTATGAAGGAGATGAGTTCAAAGGGATTCCAGTATGATCTCATCACCTACTCTTCAATACTTGAGGCAG TTGGTAAGGTTGATGAAGCATGAGAATCATGAGAGCTTGCGGTTTACCTTTTGAGCGACTCTGGCAATTCTAGTAAACAA TACCCTTGGCATTACCTTCTGAAAAGGTAAAGGCATAGGAACCATTCAAGAAAACTAAATTTCTGTATACTCCTTTCAAA AATAATTTAAAAAAAATGCCTTAGTTGATCACAATCTGAATAAGAAATTATGATATATTACTATTCTTGCCCTTGAAGCT ATGTTGTATGCATCAAAGAGCTTGTTTTTATTTTGAGTATGATACATACACGATTAGATTATTCACACATTTAGCAGCCC TCTTATACAGGACATGGAAGACCAATTGAGAAGCAGGTCTAACGGTTGAGAACATCCTCAAGCTCGGTTCACGTGAAGGT GAAGAAATTTTCAAATCTAGCTGTGGAGTGATAGGTTTTACTGATTCTTTTTGTTTCCTGAAGAAATCGAGCACATTAAG ATCCTGATGGGGGTAATGTTCTATGCTAAGATACTTTCACCTGTAGAAAGAAAATTCATCTTCCCTCACCTTTGCAGTTT CATATTCTGTGGTTTTGTTTTCCCGGTGTAAATTTCAGAAACTGTGGTAATTTTCTAATTGGTGTGATTTTAAAGGTTAG AATCTATTAAATGAATTGGATTTGTGTCAGGGTGATTGCTGGTTCCCTTTTTTAGCATGATACAGGAGAAGGGTGTGGTG TGATTGCATGATATATAGATTCATGAAAATGCCTGTAAATCTTATTTACAAAACTAGTATATTTAGTGCCACATGTAACA TGTAAGATATTTTGTGCTAGCCAAGTGTGTGCCATATCCTTCAAGTGACCTGTTAATACTGTTTCTTGTGGCATTGATAA CAATTTTGGGCTGTATTTGATTTAAAAGGAAGATTGATTTTTAGTCGTGAATCTGATTTTATTTGTATTTGTGAACTTTT ACCTGCCAGGATCCTCATGTTGTGTTGGTTGGTCTTCTTTTCCAGTAGCTAAATCAGTTGGCTACATATAATCAGGTACT TTGGTATATTCAACATCATTTGATTTATTATACCATTCTGATTGTGCAATAGGTACGTTTGTATTGATTGTACTGTGCTT GAAACGACCTGGCTGATGATGGCTAAACAGCTATACCTTTTGTTCAGCCTATTATATAATTTTAGATGGTGAATTTTTTG TAATGTTTACTATTATTTTTTAAATTGAGAAGCCCCAACAATGCTCGGGTATTAGACCTCATGTTGTGTTGGTTAGCCTT CTTCTTTTCCAGTGGCTAAATCAGTCGGCTACATATAAACAGGTACTGTGGTATATTCAACATCATTTGATTTATTATAC CATTCTGATGTGAAATTGTGCAATAGATATGTTAGCTGCTGATACAGCTATATTGCCAAAAAAAATGCTACACGTTTGTA TTTAATTATTTAATGTACTGTGCTTGAAACGACCTATAGCTGATGATGGCTAGACAGCTATACCTTGGGTGCTAAACAT
CDS sequence (LotjaGi3g1v0016200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTCCTGGATCCAGTGCTACAAGAAGAAGCATATCAACTTCCCCTCTTCTCTCTCAGAGATTAAAGCAAACAGAAAA TGAGATTGTCAAAATGTTTAGCATGCCTAACCCCGAAGAAGAAGAAAACCACAGCATTCCCATGAGAGGAGGGAGCAGCG TGTTGAGGAGAAGCCCCAACAATGCTCGGGTATTGGATGAGAGATTCATCAGGATTTTGAAAATATTCAAATGGGGACCT GATGCAGAAAAGGCATTGGAAGTGCTGAAGCTGAAGCTTGATGCACGCTTGGTTCGCGAGATTTTGAAGATAGATGTTGA GGTCAATGTGAAGATTCAGTTCTTCAAGTGGGCTGGGAAGAGAAGGAACTTTGAGCATGATTTGACGACGTACATGGCTT TGATACGGTGTTTGGATGAGCATAAGCTGTTTGGTGAAATGTGGAAGACGATACAGGAGATGGTGAAGAGCGCGTGGTGC GCGATTGGTCCTACTGAGTTGTCTGAGGTTGTGAGAATCTTGGGCAGGGCTAAGATGGTTAACAAGGCGTTGTCTGTGTT TTATCAGGTGAAGGCTCGAAAGTGCAGACCTACAGCTAGCACTTACAACTCTGTTATTTTGATGTTGATGCAAGAGGGGC ATCTTGAGAAAGTTCACGAGCTGTATAATGAGATGTGCACCGAGGGTCATTGTTATCCTGACACGGTCACGTATAGTGCG CTTGTGTCAGCATTTGCGAAGCTTAATCGTGACGATTCTGCTATTAGGTTGTTTGATGAGATGAAGGAGAATGGATTGCA GCCCACAGAGAAAATTTATACGACGTTAATGGGAATATACTTTAAGTTGGGTAGGGTTGATGAAGCTCTGGGCCTAGTCC ATGAGATGAGAATGCGGCGGTGTTCCCCGACTGTATTTACCTACACTGAATTGATAAGGGGTTTGGGAAAATCTGGGAGG GTCGAAGACGCGTACATGATATACAAGAATATGCTAAAAGATGGTTGTAAACCTGATGTTGTTCTGATGAATAATTTGAT TAACATTTTGGGTAGATCAGATCATTTAAAAGATGCTCTTCAGCTTTTTGATGAAATGAAATTGCTGAATTGCACACCCA ATGTGGTGACATATAATACCATCATCAAATCCTTATTTGAGTCCAAAGCTCCTCCTTCTGAGGCTTCTTTATGGTTTGAG AGGATGAAAAAAGATGGAGTTTCCCCCAGCTCATTTACTTATTCAATTCTCATTGATGGTTTCTGCAAAACAAATAGAGT TGAGAAGGCTTTGTTACTTCTTGAGGAGATGGATGAAAAAGGTTTTCCACCTTGTCCTGCTGCCTACTGCAGCCTAATCA ATAGCCTTGGAAAAGCAAAGCGCTATGAGGCTGCAAATGAACTATTCCAGGAATTAAAAGAGAACTGTGGACGTTCAAGT GCTCGTGTGTATGCTGTAATGATTAAGCATTTTGGAAAGTGTGGGCGGTTTAATGAAGCTGTCAATCTTTTTAATGAGAT GAAAAAACTTGGATGCATCCCTGATGTCTATGCTTATAATGCTCTCATGACTGGGATGGTAAGGGAAGACATGATGGATG CCGCTTTTTCCTTGTTTAGAACCATGGAAGAAAATGGCTGTACCCCAGATATAAATTCTCATAACATTATCTTAAACGGC TTAGCTAGGACTGGTGGTCCAAAGCGTGCTATGGAAATGTTTACAAAAATGAAGAGTTCTGCTATTAAGCCAGATGCGGT TTCTTACAACACAATTCTTGGTTGTCTTAGCCGAGCAGGTCAGTTTGAAGAGGCTGCAAAACTTATGAAGGAGATGAGTT CAAAGGGATTCCAGTATGATCTCATCACCTACTCTTCAATACTTGAGGCAGTTGGTAAGGTTGATGAAGCATGA
Protein sequence (LotjaGi3g1v0016200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLPGSSATRRSISTSPLLSQRLKQTENEIVKMFSMPNPEEEENHSIPMRGGSSVLRRSPNNARVLDERFIRILKIFKWGP DAEKALEVLKLKLDARLVREILKIDVEVNVKIQFFKWAGKRRNFEHDLTTYMALIRCLDEHKLFGEMWKTIQEMVKSAWC AIGPTELSEVVRILGRAKMVNKALSVFYQVKARKCRPTASTYNSVILMLMQEGHLEKVHELYNEMCTEGHCYPDTVTYSA LVSAFAKLNRDDSAIRLFDEMKENGLQPTEKIYTTLMGIYFKLGRVDEALGLVHEMRMRRCSPTVFTYTELIRGLGKSGR VEDAYMIYKNMLKDGCKPDVVLMNNLINILGRSDHLKDALQLFDEMKLLNCTPNVVTYNTIIKSLFESKAPPSEASLWFE RMKKDGVSPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINSLGKAKRYEAANELFQELKENCGRSS ARVYAVMIKHFGKCGRFNEAVNLFNEMKKLGCIPDVYAYNALMTGMVREDMMDAAFSLFRTMEENGCTPDINSHNIILNG LARTGGPKRAMEMFTKMKSSAIKPDAVSYNTILGCLSRAGQFEEAAKLMKEMSSKGFQYDLITYSSILEAVGKVDEA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 35 | 54 | 20 | - | – | |
| Gene3D | 107 | 265 | 159 | 6.5E-26 | ||
| ProSiteProfiles | 127 | 161 | 35 | 7.859 | ||
| PANTHER | 129 | 385 | 257 | 5.3E-120 | – | |
| PANTHER | 129 | 385 | 257 | 5.3E-120 | – | |
| ProSiteProfiles | 163 | 197 | 35 | 7.388 | ||
| TIGRFAM | 170 | 198 | 29 | 9.6E-4 | ||
| SUPERFAMILY | 175 | 336 | 162 | 2.09E-5 | – | |
| Pfam | 197 | 247 | 51 | 4.8E-11 | ||
| ProSiteProfiles | 198 | 232 | 35 | 9.229 | ||
| TIGRFAM | 201 | 234 | 34 | 2.5E-6 | ||
| ProSiteProfiles | 234 | 268 | 35 | 13.373 | ||
| TIGRFAM | 236 | 270 | 35 | 5.4E-8 | ||
| ProSiteProfiles | 269 | 303 | 35 | 10.885 | ||
| Pfam | 271 | 316 | 46 | 1.5E-11 | ||
| TIGRFAM | 272 | 305 | 34 | 3.9E-8 | ||
| Gene3D | 276 | 389 | 114 | 2.3E-34 | ||
| PANTHER | 281 | 476 | 196 | 5.3E-120 | – | |
| PANTHER | 281 | 476 | 196 | 5.3E-120 | – | |
| ProSiteProfiles | 304 | 338 | 35 | 12.88 | ||
| TIGRFAM | 306 | 340 | 35 | 3.4E-10 | ||
| SUPERFAMILY | 318 | 541 | 224 | 1.22E-8 | – | |
| Pfam | 334 | 367 | 34 | 1.8E-6 | ||
| ProSiteProfiles | 339 | 373 | 35 | 10.698 | ||
| TIGRFAM | 344 | 375 | 32 | 2.1E-5 | ||
| Pfam | 373 | 423 | 51 | 3.0E-17 | ||
| ProSiteProfiles | 374 | 409 | 36 | 10.918 | ||
| TIGRFAM | 376 | 410 | 35 | 4.1E-4 | ||
| Gene3D | 390 | 482 | 93 | 8.6E-21 | ||
| ProSiteProfiles | 410 | 444 | 35 | 13.537 | ||
| TIGRFAM | 412 | 444 | 33 | 1.3E-9 | ||
| PANTHER | 433 | 631 | 199 | 5.3E-120 | – | |
| PANTHER | 433 | 631 | 199 | 5.3E-120 | – | |
| ProSiteProfiles | 445 | 475 | 31 | 8.484 | ||
| TIGRFAM | 448 | 475 | 28 | 3.2E-5 | ||
| Pfam | 448 | 475 | 28 | 4.0E-4 | ||
| ProSiteProfiles | 480 | 514 | 35 | 12.342 | ||
| Pfam | 483 | 512 | 30 | 2.1E-6 | ||
| Gene3D | 483 | 637 | 155 | 1.3E-42 | ||
| TIGRFAM | 483 | 516 | 34 | 3.7E-9 | ||
| Pfam | 514 | 563 | 50 | 6.7E-15 | ||
| ProSiteProfiles | 515 | 549 | 35 | 12.408 | ||
| TIGRFAM | 517 | 551 | 35 | 7.6E-9 | ||
| ProSiteProfiles | 550 | 584 | 35 | 11.038 | ||
| TIGRFAM | 553 | 586 | 34 | 1.7E-4 | ||
| Pfam | 584 | 631 | 48 | 3.2E-12 | ||
| ProSiteProfiles | 585 | 619 | 35 | 12.222 | ||
| TIGRFAM | 587 | 620 | 34 | 4.8E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0016200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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