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LotjaGi3g1v0019500.1

Overview

Field Value
Gene ID LotjaGi3g1v0019500
Transcript ID LotjaGi3g1v0019500.1
Lotus japonicus genome version Gifu v1.2
Description Ribonuclease Z; TAIR: AT3G16260.1 tRNAse Z4; Swiss-Prot: sp|Q9BQ52|RNZ2_HUMAN Zinc phosphodiesterase ELAC protein 2; TrEMBL-Plants: tr|I1M5I2|I1M5I2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0019500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:2030870..2036581) extracted from Lotus japonicus Gifu genome v1.2.

GTGAGATAAAACCACACTCAATGGCCCAAGTTTCAAATTTTCGTCACCTCCTCTTCCTCCACCCTTCCAAACCCACCATC TCCACTTCCCGTTTCCGTTTCCTCTCAACCCTCGTCGCCGCCTCCTTCTCTAAACGACACCGTTCCGTCCCTCCTCTTCA AATCCGCCGCAGACACACCGCGCCAATGGAACAACCACCGGAAGACACCGCCTCCGCCGCCGGTTTCAACAAGAGAAGAG CTGAGGGCAGAGACAAGGGTGATTTCCCGAAGAAGAATCTTCAACACAAAGTTCGCAAGCTCAACCCCATCAACACCATT TCTTATCTACAGGTATTTCTTCAATCTCACCCTGTATAGGTGATACTAGATAGCATGATTCTTCATAGGTTAGGTTATGC TTCTATGATTGATTCTGAAGTTGAAATCGTGTTGAATGATCATGCGAAGTTACTCTTTTCAATGTGCACTGTTTCTTCAA TTTGGTCCAGGAGTCACTAGTAGACTAGGCAATTGGTACTTATGCATGACCACATTATGATTATAGGCCCCGTTTGGGAG AGCTTATTTTAGTTTATCTGATAGCATAAGCGCTTGTCTAAGTGTTTAGGAGAGCTTATGCAGACAGCTTATGGCCTTAT TTTCACAAGCTACTCAGGATAACTTATGTAAAAGAGCTTATGATTATATATAGCTTATTTTCAATTTATTTCAATAAAAT TTTTAAAATAGCTTATGATATAAGCGCTTATGACATATCATAAGCACTTATGGCATATCATAAGCGCTTATGGTCGCTTA TGACCATAAGTGCTTAATTAAGCTGTTTTCCCAAATGAGGCCATAATGTAGCTTCTAATATCTCTTAGGAATAAAATAGA AACCCTGCGTAGATGATTCGTAGTTTGGTTATTCGTGGTCAATGGTGCTCATGATTTATCTTTTTTTTACTTAAATGGCA AGATATAAATAAGGGATTAGTAGTGAAAAGCAAAACAAAATGGCACTGGATTTTCTGAACTTCAGAGTTCAGGCAATTAT TTTCCACAAGAGACACGTGACAATGTGATTGTTCGTAGTTTAGGTACTCGAGTGCATGTTCGGTAATGCTTTTATAATTG ATTCTAAAGTTGAAGTCATGTTGAATGAGAAGCTCATATGAGTAGCTTTTAAATATTAGAATTGATTAACTGATTCAAAC ATGCTATAGGTTAGCCCTCAATGGTCCCACTAAATATTGGAGAATGCCACCACCATCCTCCATTATGAACAATCCCTCAC CATCTTTTTGAAACCTTCCACACATTGAGTTAACTGGGTCTAGAATTCTATATGTACGTTTAAGGTCATTACGTAAGGTC ATCTTGTGTGTTGGCTCTTGTCATATACTGCGAGTTTGGTTTAGTCATGGTCCGTGTCTGGAGTGTTAATTGAGATATTC TCTGATGGAATTTTTCTGTATTTCGTATTAACCTGTTGTAGAAATCAGTGTTCCGTCTTACAAAATTGTTTCTCTCAACT GTAGATATTGGGAACTGGATTGGATACTCAAGATACATCACCTTCTGTCCTGCTTTTCTTTGACAAACAAAGATTTATTT TTAATGCTGGGGAGGTAAGCCTTGTCTGAGGATCGCATTTTCTGTCTTCTTATCTCTGTCTGGAAGCTTATTGTCTCAAC TCTTTTTATATGTTTTCAATTCAGGGACTGCAAAGGTTTTGCACGGAGCATAAGATAAAGTTATCAAAAGTATGATGTGT CTCTGACTCTCTGGAACTTGAACCCTTTTATCATCCTATGTGAAATTTTATCTTTAACATACTTATCAGGAACTACTGAA ACGATTGTCTGTCAAGATTTTTAGTTTCACAGTCTTACTATTTGTTCATCTTTATTCAGATAGACCACATATTTCTTTCT CGTGTCTGTTCGGAGACTGCGGGTGGGCTTCCAGGTCTGTCTTGCATAATATAGTATATTGAGAAAATTGTTTTTTTTTA ACTAAGATACTGAATTTGGAATTGTGTTTCTGATTTACTGGCTTACTGAACTTTGATATTTTGCCTGGTGAATGTCTATA CTAATGATTGGTTTTCAACTTATAGGTTTATTGCTTACTTTGGCTGGAACGGGAGATGTGGGAATGTCTGTAAGTAGCAT ATAAACCTCATAAAATCCTCCATCTCTATCACATATCTTTTTTGTAAATGATAGCTTCTTTTGATTTGCAGGTCAATGTA TGGGGCCCTTCAGATCTTAAGTATTTAGTAGATGCCATGAAATCATTTGTTCCCAATGCTGCCATGGTTCACACAAAGAG CTTTGGGCCCACCTTAACCACAGATGAGTCCACTGTGCAGTCTCAAAGTAAGGTTTTGGACCCCCTTGTTCTTGTTGATG ATGAGGTGGTCAAAATATCGGCTATTATCCTACAATCAAACCGCTCGGAAGGCCAGCTCCTGAGGCCTTCACCGAAGACC CTTGACTCCCCTGATGGCAAAAAGCAGCCAGATGCAAAGCCTGGTGATATGTCTGTAGTATATGTTATTGAACTGCCTGA GATCAAGGGGAAGTTTGATCCAGAGAAAGCTAAGGCCCTTGGCCTCAGACCTGGGCCAAAGTATCGTGAACTTCAACTTG GAAATTCAGTAAAATCTGATCGCCAAAAAATTATGGTAAGGCTCAAAACTACAATGCATTATTTACTAATTCAAGGTAGG AGGGAATTTAGAAAAAGTAAGTGAAATTTGAGACATAGATTTCAATCAAAATTACACATGATTTACTTTATTTTTATTTC ATTTTGGGCTTCCACAACCACTCACCTTAATGTGACTGTTTTCCTGACACATTAGGTTCATCCAAGCGATGTCATGGGCC CTTCTGTTCCTGGTCCTATTGTACTCCTTGTTGATTGCCCAGCAGAATCTTATTTGGAGGCATTATTGTCTGTACAGTCA CTTGATAGTTATGGTGATCAAGTGGGCAGCATGCCAGATGCTGGTAAGAGTGTCACATGTGTAGTTCACTTAACTCCTGC ATCTGTTGTAAGTTGTTCAAGTTATCAAAAATGGATGAAGAAATTTGGTTCTGCACAGCATATCATGGCTGGACATGAAA AGTAAGGTGTTCGTCTTTCTGGAGAGTCCTTTTTTCTGGTACTCCTACCTGCCTTATTAGTGAGAGTCCTGATTGCTTAT GTTATTCGCAGGAAGAATGTAGCAGTTCCTATTTTGAAAGCTAGTGCAAGAATTACAACTCGACTTAATTACTTGTGTCC TCAGTTCTTTCCGGCTCCAGGATTTTGGTCTCTTCCAGATCAGAATCGCTCAAAATTGGGCTCTCTTTCTTCAAGTGAGG TTTGTCGCAATGAGCTCAAGGGAATTTGCTTTCCTCGATGATAATAGTGAAGACATAATTGAGTCTAATTAAAGTGTTCA ATATGATTCGTTTGCAGGATTCCTTTTCAGAACTTTCTGGAGTAATTTCTGCTGAAAATCTTCTCAAGGTATGGAAGATT GGTCTGACTTGACTGTTAGCTTTTATTTTTACAGAAGTCAAAATAATGTTTTGGGAGTTTGAGATGCATCTACTTGTTTC ATGATTGTTGACATATATGATTTGATTTGTAAATTGACAATTTGACATATATAATTTGTTTGGATGGCCACTAAGAAAGA ATCTAAGAATGACGTTCTTGTCAAATTCTTGGAAAGTGGTTTTCTCTTGGAGCTGCTATAATGAAAAATTAATACATATA TTCAAGCAAATTTTCTGTAAAACCATTTAGAGCACTTTCTTTTCTTAGGTTTTCCTCTATCCTGTGTAATCAAATTATCT TCCAATTTTCTCACTGGAGCTTCTATTAATCTTAGTACATAACTAAATCACCTTAGGAGGTGCTGCTCAAACTATCTCCC AGATACATTTGTCACTTTAGGATTATAATTTCACATTTTTGTCCTTTGTCTCTTACTTTTGCCAAGTTCATATATTGATA ATATTTTACTCTGTGCTATACAGTTTACTTTGCGTCCTTACGCTAATCTTGGGTTGGACCGGTCTTGTATTCCAACTAAG GTGGCTTTCTCAGAAGTCATTGATGACTTACTGTCAGAGATTCCAGAGGTTGTTGAAGCAGCTCATCGTGTAAGTCAGCT CTGGCAAGAATCCAGTCAGACAAAGGAGGCTTTAATTCCTGTGGCTGACCGCGAGATGATGATTGAGGAACCATGGCTGC ATGAACATGGTATTCCTGCTTGTTTGGAAAATATAAGGAGAGATGACTTGGAAATAGTTCTTCTTGGAACTGGTTCATCC CAGCCATCCAAGTACCGAAATGTGAGCTCAATATATATTAATCTTTTCTCAAAAGGTGGTTTGCTATTGGATTGTGGTGA AGGAACCTTGGGACAACTTAAAAGAAGGCAAGTCTATCTAAATTGTTAATCATTTGTGTTTATAAACTGAACTCTTGGCT GATGTATCCTTTGGAAACAGATATGGTGTAAGTGGTGCGGATGATGCTGTGAGAGCATTAAGCTGCATTTGGATATCTCA TATTCATGCTGATCACCATAGTGGCTTAGCTAGGATTCTTGCTCTACGCCGTGATTTGCTAAAGGGGTTACCTCATGAAC CAATGCTTGTTGTAGGACCAAAGCAACTTAAGAGATATTTATTGGCATATCAAAGACTCGAAGATTTAGATATGTTGTTC CTTGACTGCAAGCACACCACAGCAGCTTCATTGGAAGCTTTTGACGACGGCTTCCAAGGAATTCCAGTTAATTCTCAGGA TATGAACAACGATGATTCGGAGGTAATTGCCTCAAAAGTTGATTCAACCTTGTTTGCTAGAGGATCTCGAATGGAAAGCT TTTGGAAAAGACCAGGTGTTGACACAGATGTAGTCCTAAAGAAATTGAAGGAGGTAATCAAGGAAGCAGGTCTCAGTGCC TTGATTAGCTTCCCCGTTATACATTGCCCACAGGCATTTGGTGTTGTTCTAACAGCAGAAGAAAGGACTAATAGTGTTGG AAAAGTGATACCTGGTTGGAAGCTTGTATATTCTGGTGACACAAGGCCCTGCCCCGAGCTAGTAGAAGCATCTCAAGGTG CAACAGTTCTTATACATGAGGTATGTCTCTCTTCAAATCACTTGATGTTATCTGAGTTGTAATGACTTAGCATTTGCTGG GAATCAGTCTTGTCAATCCATGATAGCTGTGCGTATTAGGGTGAAGCTGCTGCTAACTCATGATTTGCTAATTGATGCAG GCAACTTTTGAGGATGCTTTGGTAGATGAGGCTTTAGCAAGAAACCATAGCACCACAAATGAAGCCATAGAAATGGGAAA CTCTGCTAATGCATATCGAATCATACTTACTCATTTCAGCCAACGATATCCTAAAATCCCTGTGTTGGATGAAACACACA TGCATAAAACGTGTGTTGCATTTGACATGATGAGTATCAATATAGCAGATTTGCCCGTGCTTCCCAAGGTTCTTCCATAT TTGAAATTGCTTTTCAGAAATGAAATGATAGTTGACGAATCAGATGATGTAGTAGATGCTGTTACTTCAGCTTCTTAACA AAACAAATGACTCAATTGTGCTATTGATTTTTGTATTGGATATTAACTTTACTATGTTAAGCAATGCAAATATAGGAGCA CTTATCCTTGGATTGCCCGTGCAGTTTCCTTA
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0019500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCCCAAGTTTCAAATTTTCGTCACCTCCTCTTCCTCCACCCTTCCAAACCCACCATCTCCACTTCCCGTTTCCGTTT CCTCTCAACCCTCGTCGCCGCCTCCTTCTCTAAACGACACCGTTCCGTCCCTCCTCTTCAAATCCGCCGCAGACACACCG CGCCAATGGAACAACCACCGGAAGACACCGCCTCCGCCGCCGGTTTCAACAAGAGAAGAGCTGAGGGCAGAGACAAGGGT GATTTCCCGAAGAAGAATCTTCAACACAAAGTTCGCAAGCTCAACCCCATCAACACCATTTCTTATCTACAGATATTGGG AACTGGATTGGATACTCAAGATACATCACCTTCTGTCCTGCTTTTCTTTGACAAACAAAGATTTATTTTTAATGCTGGGG AGGGACTGCAAAGGTTTTGCACGGAGCATAAGATAAAGTTATCAAAAATAGACCACATATTTCTTTCTCGTGTCTGTTCG GAGACTGCGGGTGGGCTTCCAGGTTTATTGCTTACTTTGGCTGGAACGGGAGATGTGGGAATGTCTGTCAATGTATGGGG CCCTTCAGATCTTAAGTATTTAGTAGATGCCATGAAATCATTTGTTCCCAATGCTGCCATGGTTCACACAAAGAGCTTTG GGCCCACCTTAACCACAGATGAGTCCACTGTGCAGTCTCAAAGTAAGGTTTTGGACCCCCTTGTTCTTGTTGATGATGAG GTGGTCAAAATATCGGCTATTATCCTACAATCAAACCGCTCGGAAGGCCAGCTCCTGAGGCCTTCACCGAAGACCCTTGA CTCCCCTGATGGCAAAAAGCAGCCAGATGCAAAGCCTGGTGATATGTCTGTAGTATATGTTATTGAACTGCCTGAGATCA AGGGGAAGTTTGATCCAGAGAAAGCTAAGGCCCTTGGCCTCAGACCTGGGCCAAAGTATCGTGAACTTCAACTTGGAAAT TCAGTAAAATCTGATCGCCAAAAAATTATGGTTCATCCAAGCGATGTCATGGGCCCTTCTGTTCCTGGTCCTATTGTACT CCTTGTTGATTGCCCAGCAGAATCTTATTTGGAGGCATTATTGTCTGTACAGTCACTTGATAGTTATGGTGATCAAGTGG GCAGCATGCCAGATGCTGGTAAGAGTGTCACATGTGTAGTTCACTTAACTCCTGCATCTGTTGTAAGTTGTTCAAGTTAT CAAAAATGGATGAAGAAATTTGGTTCTGCACAGCATATCATGGCTGGACATGAAAAGAAGAATGTAGCAGTTCCTATTTT GAAAGCTAGTGCAAGAATTACAACTCGACTTAATTACTTGTGTCCTCAGTTCTTTCCGGCTCCAGGATTTTGGTCTCTTC CAGATCAGAATCGCTCAAAATTGGGCTCTCTTTCTTCAAGTGAGGATTCCTTTTCAGAACTTTCTGGAGTAATTTCTGCT GAAAATCTTCTCAAGTTTACTTTGCGTCCTTACGCTAATCTTGGGTTGGACCGGTCTTGTATTCCAACTAAGGTGGCTTT CTCAGAAGTCATTGATGACTTACTGTCAGAGATTCCAGAGGTTGTTGAAGCAGCTCATCGTGTAAGTCAGCTCTGGCAAG AATCCAGTCAGACAAAGGAGGCTTTAATTCCTGTGGCTGACCGCGAGATGATGATTGAGGAACCATGGCTGCATGAACAT GGTATTCCTGCTTGTTTGGAAAATATAAGGAGAGATGACTTGGAAATAGTTCTTCTTGGAACTGGTTCATCCCAGCCATC CAAGTACCGAAATGTGAGCTCAATATATATTAATCTTTTCTCAAAAGGTGGTTTGCTATTGGATTGTGGTGAAGGAACCT TGGGACAACTTAAAAGAAGATATGGTGTAAGTGGTGCGGATGATGCTGTGAGAGCATTAAGCTGCATTTGGATATCTCAT ATTCATGCTGATCACCATAGTGGCTTAGCTAGGATTCTTGCTCTACGCCGTGATTTGCTAAAGGGGTTACCTCATGAACC AATGCTTGTTGTAGGACCAAAGCAACTTAAGAGATATTTATTGGCATATCAAAGACTCGAAGATTTAGATATGTTGTTCC TTGACTGCAAGCACACCACAGCAGCTTCATTGGAAGCTTTTGACGACGGCTTCCAAGGAATTCCAGTTAATTCTCAGGAT ATGAACAACGATGATTCGGAGGTAATTGCCTCAAAAGTTGATTCAACCTTGTTTGCTAGAGGATCTCGAATGGAAAGCTT TTGGAAAAGACCAGGTGTTGACACAGATGTAGTCCTAAAGAAATTGAAGGAGGTAATCAAGGAAGCAGGTCTCAGTGCCT TGATTAGCTTCCCCGTTATACATTGCCCACAGGCATTTGGTGTTGTTCTAACAGCAGAAGAAAGGACTAATAGTGTTGGA AAAGTGATACCTGGTTGGAAGCTTGTATATTCTGGTGACACAAGGCCCTGCCCCGAGCTAGTAGAAGCATCTCAAGGTGC AACAGTTCTTATACATGAGGCAACTTTTGAGGATGCTTTGGTAGATGAGGCTTTAGCAAGAAACCATAGCACCACAAATG AAGCCATAGAAATGGGAAACTCTGCTAATGCATATCGAATCATACTTACTCATTTCAGCCAACGATATCCTAAAATCCCT GTGTTGGATGAAACACACATGCATAAAACGTGTGTTGCATTTGACATGATGAGTATCAATATAGCAGATTTGCCCGTGCT TCCCAAGGTTCTTCCATATTTGAAATTGCTTTTCAGAAATGAAATGATAGTTGACGAATCAGATGATGTAGTAGATGCTG TTACTTCAGCTTCTTAA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0019500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAQVSNFRHLLFLHPSKPTISTSRFRFLSTLVAASFSKRHRSVPPLQIRRRHTAPMEQPPEDTASAAGFNKRRAEGRDKG DFPKKNLQHKVRKLNPINTISYLQILGTGLDTQDTSPSVLLFFDKQRFIFNAGEGLQRFCTEHKIKLSKIDHIFLSRVCS ETAGGLPGLLLTLAGTGDVGMSVNVWGPSDLKYLVDAMKSFVPNAAMVHTKSFGPTLTTDESTVQSQSKVLDPLVLVDDE VVKISAIILQSNRSEGQLLRPSPKTLDSPDGKKQPDAKPGDMSVVYVIELPEIKGKFDPEKAKALGLRPGPKYRELQLGN SVKSDRQKIMVHPSDVMGPSVPGPIVLLVDCPAESYLEALLSVQSLDSYGDQVGSMPDAGKSVTCVVHLTPASVVSCSSY QKWMKKFGSAQHIMAGHEKKNVAVPILKASARITTRLNYLCPQFFPAPGFWSLPDQNRSKLGSLSSSEDSFSELSGVISA ENLLKFTLRPYANLGLDRSCIPTKVAFSEVIDDLLSEIPEVVEAAHRVSQLWQESSQTKEALIPVADREMMIEEPWLHEH GIPACLENIRRDDLEIVLLGTGSSQPSKYRNVSSIYINLFSKGGLLLDCGEGTLGQLKRRYGVSGADDAVRALSCIWISH IHADHHSGLARILALRRDLLKGLPHEPMLVVGPKQLKRYLLAYQRLEDLDMLFLDCKHTTAASLEAFDDGFQGIPVNSQD MNNDDSEVIASKVDSTLFARGSRMESFWKRPGVDTDVVLKKLKEVIKEAGLSALISFPVIHCPQAFGVVLTAEERTNSVG KVIPGWKLVYSGDTRPCPELVEASQGATVLIHEATFEDALVDEALARNHSTTNEAIEMGNSANAYRIILTHFSQRYPKIP VLDETHMHKTCVAFDMMSINIADLPVLPKVLPYLKLLFRNEMIVDESDDVVDAVTSAS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
46 68 23 - –
PANTHER
PTHR12553
61 935 875 0.0 –
PANTHER
PTHR12553:SF67
61 935 875 0.0 –
Gene3D
G3DSA:3.60.15.10
102 388 287 5.1E-32
IPR036866
SUPERFAMILY
SSF56281
104 349 246 1.4E-19
IPR036866
Pfam
PF13691
111 165 55 1.1E-16
IPR027794
MobiDBLite
mobidb-lite
258 279 22 - –
Gene3D
G3DSA:3.60.15.10
574 905 332 1.9E-80
IPR036866
Hamap
MF_01818
574 901 328 22.424
IPR013471
SUPERFAMILY
SSF56281
575 900 326 2.95E-45
IPR036866
CDD
cd07718
576 835 260 7.40764E-90 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0008033
Biological process TRNA processing The process in which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group.
Subterm of
GO:0016891
Molecular function Endoribonuclease activity, producing 5'-phosphomonoesters Catalysis of the hydrolysis of ester linkages within ribonucleic acids by creating internal breaks to yield 5'-phosphomonoesters.
Subterm of
GO:0042779
Biological process TRNA 3'-trailer cleavage Cleavage of the 3'-end of the pre-tRNA as part of the process of generating the mature 3'-end of the tRNA; may involve endonucleolytic or exonucleolytic cleavage, or both.
Subterm of
Part of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0019500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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