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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0019700 |
| Transcript ID | LotjaGi3g1v0019700.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Aquaporin-like protein; TAIR: AT3G16240.1 delta tonoplast integral protein; Swiss-Prot: sp|Q41951|TIP21_ARATH Aquaporin TIP2-1; TrEMBL-Plants: tr|I3S7T3|I3S7T3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0019700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:2041988..2044733) extracted from Lotus japonicus Gifu genome v1.2.
AATCAATAAAATAACTTTACTATCAAGCTTTTCTAAATGATAATAGTGTTAATGCAACCTTACCATGAAGTTCATGAACT TATTTTAATAAGCCTTGATAGTGAGTACTTGACAATTTCTGCTATATATATAGCTCACGATAGAAGCCTTTTGTGTTATA CTCTAAACATTTTCCTTATCTTATCCTCTCCACCATCTTTGAGGCTCTTGTAGAAACTTCAGGAGATGGCTGGCATAGCA TTTGGACGGTTTGATGATTCTTTCAGTTTTGGCTCCATCAAAGCCTATATTGCTGAGTTCATCTCAACCTTGATCTTTGT TTTTGCTGGTGTTGGCTCAGCCATAGCCTATGGTTAGTTTATCTAAGAATAGAACTTAAGATATCACTAGAGCTACACTC AAGTAATACCATTTTTTTTCCTCACCATGATGAGGTATATCAGTAGCATGAAATAAGTGTGTTTCGTTTCATGTTTGGAA GCTTTAAAATCAATTTGGCGGAGAAGCCTGAGATAGTAGCTTCTACAATGGACATTTAATTATGAGATTTCATAACTGAA TTTCGTAACATTATCCTATAGAAATTAATTTTTTCACACTTTTCAACTCATTTTAACACACTTTTCTATAATCACTTTTA TCAATATTATTTTATCCATAATCAATTTTTACAACGCTGATCACTTATACTTCTTTTTGCAGGCAAATTGACATCAGATG CAGCTCTTGACCCTGCTGGGTTGGTGGCTGTTGCTATTTGCCATGCTTTTGCTCTTTTTGTTGCTGTTTCTGTTGGAGCC AACATTTCTGGTGGCCATGTCAACCCAGCTGTGACATTTGGGTTGGCTCTTGGTGGCCAGATCACACTCCTCACTGGTCT CTTCTACTGGATTGCACAGCTTCTTGGCTCCATAGTTGCATGCTTTCTCCTCAAGTTTGTCACAGGAGGCTTGGTAAGTT CAAAGTTGAACCTTATATCTTCCATGATTCAACCACTTTCTGGTCAAACATGGAAAAATTATCATTAATTCTTGCACTAG AAGCTTCATGCATAAACAGAATCATATCTGTCTTTTTGCTATTCATCATATTGAGGGGACACTGGTGTTAGGTAGTGGGT ATAAATCTGTTTGAATAGAGTTTCATGATTTCTCTTTAGTGTGAAATAAACACTTTCAATTAGTGTGGTGTGTATGCTTT TGATGAGTGTGCTAGCTAGAGTGAACTATTTGTTGATTGAAATATAAAGAGTTTCTCAAATCTACTCTCTATGGTAAAGG AAAAAATAAAGTGCTGACCCTTTATTTAAGTTAGCACAATCACAATCACCCCTACAGTAGTGTTTTGGCTGTCCTTAGCA AAAGTTTTTTCCCCCTCTCCAAGGGTGGTGGATTTGGGTTCCTGTGCAGTCAGATCCATCTAAAATTCACATAGTCAAGG AGTTTGAGTCGTTCGATCAAGATCAGACGACTCATGTTTTATCAACATTGAATGATAGAGATAAGTTTAAAATCTTAACA GGTTGATCTTAATAGAATGGCTCAGATGTCTTGACTGCGTGCATTTAAGATTCTATCAGTGTTATGAATCTTGCAGAACA ATAACTCACCTATCTTGATAGAATGACTCAGATTTCTTGACTACATGCATTTTCATGTTCATTTTTTATTTTTGTTAAAA AGTAGAAACTGAGTGAATGATATTCCTTGTCAGACTTTGCCAATCCACAGTGTTGCTGCTGGAGCTGGTGAAGGAGTTGT TACAGAAATCATCATCACCTTTGGATTGGTGTACACTGTGTATGCCACTGCAGCTGACCCCAAGAAGGGATCATTGGGCA CAATTGCACCCATTGCAATTGGTTTCATTGTTGGTGCCAACATCTTAGCTGCAGGGCCATTCTCTGGTGGGTCAATGAAC CCAGCACGCTCCTTTGGCCCTGCAGTTGTCAGTGGTGACTTCCATGACAACTGGATCTACTGGGTTGGACCTCTCATTGG TGGTGGCTTGGCTGGTGTTATCTACACCTATGTGTTCTTCCCCTCCCAGCATGCACCTCTGGCCAGTGATTTTTGATTTC ATTTAGATTGTTGGCCTTTGTAATTCATGTTCCTTTGTAATAAAGGAAGAAAAGCAACTTTTGCAGATTTTTCTTTCTTT CATTTTCTCCCCTTTGTCCTTTTGCTTATGATGTAAAGCATTTGAGTCATTGTTTTCCAGTAAGAATCCAGGAGGTTGCC AATGTAATGCTTTTTCAAGGGAAAAAAAGAACACTCAAGTTTACTTTTCTGCCTTTCATTTTTATTTTTTTAAATTATGA TATTCACCGCCGACAACAGTGATTAATCCGTAAGCCGCATATGTCCACACTAAGCAATAAACACTGACCATGAAATGTGC TCCATTTCCATAAGCGAGGATCAAACACTATGACCTCATGGTTAAGGGATGAGGTGAACAACCAACGTGTCACACCTATG ACTTCCATTTTGATTTGGATACAAGATGGATTAGTGTGCCATTGATAAGAGCTCTCAGAAAATTGATGTGGTAAATTAGG AAAATAAAAGTGGGCAATCACAAATCTGGTACAGGTAAAAACTTATAAGTTGGAAATTAGGAAGGCTTTCACTTTGGAAT AGAAGTAATTAACAAGAAACAACTATTAGCATGTAAAGAGAGTGGTTTGGGAGGATAAAAATGTATCCATATATGCAATT AGCTACATTATTCTATTGGGATTATG
CDS sequence (LotjaGi3g1v0019700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGGCATAGCATTTGGACGGTTTGATGATTCTTTCAGTTTTGGCTCCATCAAAGCCTATATTGCTGAGTTCATCTC AACCTTGATCTTTGTTTTTGCTGGTGTTGGCTCAGCCATAGCCTATGGCAAATTGACATCAGATGCAGCTCTTGACCCTG CTGGGTTGGTGGCTGTTGCTATTTGCCATGCTTTTGCTCTTTTTGTTGCTGTTTCTGTTGGAGCCAACATTTCTGGTGGC CATGTCAACCCAGCTGTGACATTTGGGTTGGCTCTTGGTGGCCAGATCACACTCCTCACTGGTCTCTTCTACTGGATTGC ACAGCTTCTTGGCTCCATAGTTGCATGCTTTCTCCTCAAGTTTGTCACAGGAGGCTTGACTTTGCCAATCCACAGTGTTG CTGCTGGAGCTGGTGAAGGAGTTGTTACAGAAATCATCATCACCTTTGGATTGGTGTACACTGTGTATGCCACTGCAGCT GACCCCAAGAAGGGATCATTGGGCACAATTGCACCCATTGCAATTGGTTTCATTGTTGGTGCCAACATCTTAGCTGCAGG GCCATTCTCTGGTGGGTCAATGAACCCAGCACGCTCCTTTGGCCCTGCAGTTGTCAGTGGTGACTTCCATGACAACTGGA TCTACTGGGTTGGACCTCTCATTGGTGGTGGCTTGGCTGGTGTTATCTACACCTATGTGTTCTTCCCCTCCCAGCATGCA CCTCTGGCCAGTGATTTTTGA
Protein sequence (LotjaGi3g1v0019700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGIAFGRFDDSFSFGSIKAYIAEFISTLIFVFAGVGSAIAYGKLTSDAALDPAGLVAVAICHAFALFVAVSVGANISGG HVNPAVTFGLALGGQITLLTGLFYWIAQLLGSIVACFLLKFVTGGLTLPIHSVAAGAGEGVVTEIIITFGLVYTVYATAA DPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFHDNWIYWVGPLIGGGLAGVIYTYVFFPSQHA PLASDF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 19 | 19 | - | – | |
| PANTHER | 1 | 246 | 246 | 8.9E-144 | ||
| PANTHER | 1 | 246 | 246 | 8.9E-144 | – | |
| Gene3D | 2 | 245 | 244 | 2.2E-90 | ||
| SUPERFAMILY | 13 | 241 | 229 | 3.53E-66 | ||
| Pfam | 16 | 230 | 215 | 5.9E-74 | ||
| PRINTS | 19 | 38 | 20 | 2.5E-56 | ||
| CDD | 19 | 233 | 215 | 3.72668E-63 | ||
| Phobius | 20 | 42 | 23 | - | – | |
| TMHMM | 20 | 42 | 23 | - | – | |
| TIGRFAM | 23 | 230 | 208 | 4.0E-52 | ||
| Phobius | 43 | 53 | 11 | - | – | |
| Phobius | 54 | 73 | 20 | - | – | |
| TMHMM | 54 | 75 | 22 | - | – | |
| PRINTS | 63 | 87 | 25 | 2.5E-56 | ||
| Phobius | 74 | 84 | 11 | - | – | |
| ProSitePatterns | 81 | 89 | 9 | - | ||
| Phobius | 85 | 106 | 22 | - | – | |
| TMHMM | 85 | 107 | 23 | - | – | |
| PRINTS | 100 | 119 | 20 | 2.5E-56 | ||
| Phobius | 107 | 112 | 6 | - | – | |
| TMHMM | 109 | 131 | 23 | - | – | |
| Phobius | 113 | 134 | 22 | - | – | |
| Phobius | 135 | 139 | 5 | - | – | |
| Phobius | 140 | 159 | 20 | - | – | |
| TMHMM | 141 | 160 | 20 | - | – | |
| PRINTS | 143 | 161 | 19 | 2.5E-56 | ||
| Phobius | 160 | 170 | 11 | - | – | |
| TMHMM | 167 | 189 | 23 | - | – | |
| Phobius | 171 | 193 | 23 | - | – | |
| PRINTS | 176 | 198 | 23 | 2.5E-56 | ||
| Phobius | 194 | 212 | 19 | - | – | |
| TMHMM | 213 | 235 | 23 | - | – | |
| PRINTS | 213 | 233 | 21 | 2.5E-56 | ||
| Phobius | 213 | 235 | 23 | - | – | |
| Phobius | 236 | 246 | 11 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Channel activity | Enables the energy-independent facilitated diffusion, mediated by passage of a solute through a transmembrane aqueous pore or channel. Stereospecificity is not exhibited but this transport may be specific for a particular molecular species or class of molecules. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi3g1v0019700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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