Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0022000 |
| Transcript ID | LotjaGi3g1v0022000.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Photosystem I P700 chlorophyll a apoprotein A2; TAIR: ATCG00340.1 Photosystem I, PsaA/PsaB protein (ChrC); Swiss-Prot: sp|P58385|PSAB_LOTJA Photosystem I P700 chlorophyll a apoprotein A2; TrEMBL-Plants: tr|A0A0K0LWC0|A0A0K0LWC0_9FABA Photosystem I P700 chlorophyll a apoprotein A2; Found in the gene: LotjaGi3g1v0022000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:2381974..2383871) extracted from Lotus japonicus Gifu genome v1.2.
TTCAGAGAGATAGTAATCATCCTGATATGCAATTATCTTTTATTTATTCAAGTCGATCCAATTCAATTTGTTCTTTAAAG GAAAATTGATATGAATAATTAAGCAAGAGTAATTGTCTGGCAGTATTCAAAACATTTAAGTATGAAAGAAAAAATTTAAG ATTGTTACCGAAATGGAAACCTAGCGTTTCATGGTTTAAAAATGCCGAATCCCGCCTCAATCATCATTTGTCAGGACTCT TTGGAGTTAGTTCCTTGGCTTGGACAGGACATTTAGTCCATGTCGCTATTCCGGGATCTAGGGGAGAATACGTTCGATGG AATAATTTTTTAAGTATATTGCCTCACCCCCAAGGATTAGGTCCACTTTTTACAGGTCAGTGGAATCTTTATGCTCAAAA CCCCGATTCCAGTAGTCATTTATTTGGTACCTCCCAAGGGGCTGGAACTGCTATTTTAACACTTCTCGGGGGATTCCATC CACAAACGCAAAGTTTATGGCTAACCGATATGGCACACCATCATTTAGCTATTGCCATTCTGTTTCTACTTGCCGGTCAT ATGTATAGAACTAACTTCGGTATTGGGCACAGTATAAAGGATCTTTTAGAAGCACATATTCCTCCCGGGGGTAGATTAGG GCGTGGACATAAGGGTCTTTATGACACAATCAATAATTCAATTCATTTTCAATTAGGCCTTGCCTTAGCCTCTTTAGGGG TGATTACTTCTTTGGTAGCTCAACACATGTATTCTTTACCCGCTTATGCGTTTATAGCGCAAGACTATACTACTCAAGCT GCGTTATATACTCATCATCAATACATCGCAGGATTCATTATGACAGGGGCTTTTGCTCACGGAGCTATCTTTTTTATTCG AGATTACAATCCTGAGCAGAATGAAGATAATGTATTGGCAAGAATGTTAGATCACAAGGAAGCTATCATATCCCATTTAA GTTGGGCCAGTCTATTTCTGGGGTTCCATACTTTGGGACTTTATGTCCATAATGATGTTATGCTTGCTTTTGGTACTCCG GAGAAACAAATCTTGATTGAACCCATATTTGCCCAATGGATACAATCTGCTCATGGGAAAACTTCATATGGGTTCGATGT ACTTTTATCTTCAACGAATAGTCCGGCGTTCAATGCGGGGCGAAGCATATGGTTGCCTGGTTGGTTAAACGCTATTAATG AGAATAGTAATTCTCTATTCTTAACAATAGGACCCGGCGACTTCTTGGTTCATCATGCTATTGCTCTTGGTTTACATACA ACTACATTGATCTTAGTAAAAGGTGCTTTGGATGCGCGTGGTTCCAAATTAATGCCGGATAAAAAAGATTTTGGTTATAG TTTTCCTTGCGATGGTCCGGGACGGGGCGGTACTTGTGATATTTCGGCCTGGGACGCTTTTTATTTGGCAGTTTTCTGGA TGTTAAATACGATTGGATGGGTTACTTTTTATTGGCATTGGAAGCACATTACACTGTGGCAGGGTAATGTTTCACAGTTT AATGAATCTTCGACCTATTTGATGGGATGGTTAAGAGATTATCTATGGTTAAACTCTTCACAACTTATCAATGGATATAA CCCTTTTGGTATGAATAGTTTATCAGTCTGGGCGTGGATGTTTTTATTTGGACATCTTGTTTGGGCTACTGGATTTATGT TCTTAATTTCCTGGCGCGGATATTGGCAGGAATTAATTGAAACTTTAGCATGGGCTCATGAACGCACACCTTTGGCTAAT TTGATTCGATGGAGAGATAAGCCAGTTGCTCTTTCCATTGTGCAAGCAAGGTTGGTTGGAATAGCCCACTTTTCGGTAGG TTATATATTTACTTATGCGGCTTTCTTGATTGCCTCTACATCGGGTAAATTTGGTTAA
CDS sequence (LotjaGi3g1v0022000.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAATTATCTTTTATTTATTCAAGTCGATCCAATTCAATTTGTTCTTTAAAGGAAAGACTCTTTGGAGTTAGTTCCTT GGCTTGGACAGGACATTTAGTCCATGTCGCTATTCCGGGATCTAGGGGAGAATACGTTCGATGGAATAATTTTTTAAGTA TATTGCCTCACCCCCAAGGATTAGGTCCACTTTTTACAGGTCAGTGGAATCTTTATGCTCAAAACCCCGATTCCAGTAGT CATTTATTTGGTACCTCCCAAGGGGCTGGAACTGCTATTTTAACACTTCTCGGGGGATTCCATCCACAAACGCAAAGTTT ATGGCTAACCGATATGGCACACCATCATTTAGCTATTGCCATTCTGTTTCTACTTGCCGGTCATATGTATAGAACTAACT TCGGTATTGGGCACAGTATAAAGGATCTTTTAGAAGCACATATTCCTCCCGGGGGTAGATTAGGGCGTGGACATAAGGGT CTTTATGACACAATCAATAATTCAATTCATTTTCAATTAGGCCTTGCCTTAGCCTCTTTAGGGGTGATTACTTCTTTGGT AGCTCAACACATGTATTCTTTACCCGCTTATGCGTTTATAGCGCAAGACTATACTACTCAAGCTGCGTTATATACTCATC ATCAATACATCGCAGGATTCATTATGACAGGGGCTTTTGCTCACGGAGCTATCTTTTTTATTCGAGATTACAATCCTGAG CAGAATGAAGATAATGTATTGGCAAGAATGTTAGATCACAAGGAAGCTATCATATCCCATTTAAGTTGGGCCAGTCTATT TCTGGGGTTCCATACTTTGGGACTTTATGTCCATAATGATGTTATGCTTGCTTTTGGTACTCCGGAGAAACAAATCTTGA TTGAACCCATATTTGCCCAATGGATACAATCTGCTCATGGGAAAACTTCATATGGGTTCGATGTACTTTTATCTTCAACG AATAGTCCGGCGTTCAATGCGGGGCGAAGCATATGGTTGCCTGGTTGGTTAAACGCTATTAATGAGAATAGTAATTCTCT ATTCTTAACAATAGGACCCGGCGACTTCTTGGTTCATCATGCTATTGCTCTTGGTTTACATACAACTACATTGATCTTAG TAAAAGGTGCTTTGGATGCGCGTGGTTCCAAATTAATGCCGGATAAAAAAGATTTTGGTTATAGTTTTCCTTGCGATGGT CCGGGACGGGGCGGTACTTGTGATATTTCGGCCTGGGACGCTTTTTATTTGGCAGTTTTCTGGATGTTAAATACGATTGG ATGGGTTACTTTTTATTGGCATTGGAAGCACATTACACTGTGGCAGGGTAATGTTTCACAGTTTAATGAATCTTCGACCT ATTTGATGGGATGGTTAAGAGATTATCTATGGTTAAACTCTTCACAACTTATCAATGGATATAACCCTTTTGGTATGAAT AGTTTATCAGTCTGGGCGTGGATGTTTTTATTTGGACATCTTGTTTGGGCTACTGGATTTATGTTCTTAATTTCCTGGCG CGGATATTGGCAGGAATTAATTGAAACTTTAGCATGGGCTCATGAACGCACACCTTTGGCTAATTTGATTCGATGGAGAG ATAAGCCAGTTGCTCTTTCCATTGTGCAAGCAAGGTTGGTTGGAATAGCCCACTTTTCGGTAGGTTATATATTTACTTAT GCGGCTTTCTTGATTGCCTCTACATCGGGTAAATTTGGTTAA
Protein sequence (LotjaGi3g1v0022000.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQLSFIYSSRSNSICSLKERLFGVSSLAWTGHLVHVAIPGSRGEYVRWNNFLSILPHPQGLGPLFTGQWNLYAQNPDSSS HLFGTSQGAGTAILTLLGGFHPQTQSLWLTDMAHHHLAIAILFLLAGHMYRTNFGIGHSIKDLLEAHIPPGGRLGRGHKG LYDTINNSIHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDYTTQAALYTHHQYIAGFIMTGAFAHGAIFFIRDYNPE QNEDNVLARMLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQILIEPIFAQWIQSAHGKTSYGFDVLLSST NSPAFNAGRSIWLPGWLNAINENSNSLFLTIGPGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCDG PGRGGTCDISAWDAFYLAVFWMLNTIGWVTFYWHWKHITLWQGNVSQFNESSTYLMGWLRDYLWLNSSQLINGYNPFGMN SLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGIAHFSVGYIFTY AAFLIASTSGKFG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 20 | 20 | - | – | |
| Gene3D | 3 | 573 | 571 | 0.0 | ||
| PRINTS | 14 | 38 | 25 | 8.0E-128 | ||
| TIGRFAM | 19 | 573 | 555 | 0.0 | ||
| PANTHER | 19 | 573 | 555 | 0.0 | – | |
| PANTHER | 19 | 573 | 555 | 0.0 | – | |
| Pfam | 20 | 566 | 547 | 2.7E-260 | ||
| SUPERFAMILY | 20 | 570 | 551 | 7.72E-255 | ||
| Phobius | 21 | 38 | 18 | - | – | |
| Phobius | 39 | 111 | 73 | - | – | |
| PRINTS | 112 | 130 | 19 | 8.0E-128 | ||
| Phobius | 112 | 130 | 19 | - | – | |
| Phobius | 131 | 168 | 38 | - | – | |
| Phobius | 169 | 188 | 20 | - | – | |
| PRINTS | 169 | 192 | 24 | 8.0E-128 | ||
| TMHMM | 171 | 193 | 23 | - | – | |
| Phobius | 189 | 215 | 27 | - | – | |
| PRINTS | 208 | 234 | 27 | 8.0E-128 | ||
| TMHMM | 213 | 235 | 23 | - | – | |
| Phobius | 216 | 235 | 20 | - | – | |
| Phobius | 236 | 255 | 20 | - | – | |
| TMHMM | 256 | 278 | 23 | - | – | |
| Phobius | 256 | 277 | 22 | - | – | |
| PRINTS | 256 | 278 | 23 | 8.0E-128 | ||
| Phobius | 278 | 355 | 78 | - | – | |
| Phobius | 356 | 378 | 23 | - | – | |
| TMHMM | 356 | 378 | 23 | - | – | |
| PRINTS | 356 | 374 | 19 | 8.0E-128 | ||
| Phobius | 379 | 413 | 35 | - | – | |
| PRINTS | 387 | 407 | 21 | 8.0E-128 | ||
| ProSitePatterns | 398 | 407 | 10 | - | ||
| PRINTS | 414 | 435 | 22 | 8.0E-128 | ||
| Phobius | 414 | 435 | 22 | - | – | |
| TMHMM | 414 | 433 | 20 | - | – | |
| Phobius | 436 | 483 | 48 | - | – | |
| PRINTS | 482 | 504 | 23 | 8.0E-128 | ||
| TMHMM | 484 | 506 | 23 | - | – | |
| Phobius | 484 | 504 | 21 | - | – | |
| Phobius | 505 | 545 | 41 | - | – | |
| PRINTS | 538 | 566 | 29 | 8.0E-128 | ||
| TMHMM | 546 | 568 | 23 | - | – | |
| Phobius | 546 | 566 | 21 | - | – | |
| Phobius | 567 | 573 | 7 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Photosystem I | A photosystem that contains an iron-sulfur reaction center associated with accessory pigments and electron carriers. In cyanobacteria and chloroplasts, photosystem I functions as a light-dependent plastocyanin-ferredoxin oxidoreductase, transferring electrons from plastocyanin to ferredoxin; in photosynthetic bacteria that have only a single type I photosystem, such as the green sulfur bacteria, electrons can go either to ferredoxin (Fd) -> NAD+ or to menaquinone (MK) -> Cytb/FeS -> Cytc555 -> photosystem I (cyclic photophosphorylation). | ||
| Cellular component | Thylakoid | A membranous cellular structure that bears the photosynthetic pigments in plants, algae, and cyanobacteria. In cyanobacteria thylakoids are of various shapes and are attached to, or continuous with, the plasma membrane. In eukaryotes they are flattened, membrane-bounded disk-like structures located in the chloroplasts; in the chloroplasts of higher plants the thylakoids form dense stacks called grana. Isolated thylakoid preparations can carry out photosynthetic electron transport and the associated phosphorylation. | ||
| Biological process | Photosynthesis | The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi3g1v0022000.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…