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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0025200 |
| Transcript ID | LotjaGi3g1v0025200.2 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent RNA helicase p62; TAIR: AT1G55150.1 DEA(D/H)-box RNA helicase family protein; Swiss-Prot: sp|Q5QMN3|RH20_ORYSJ DEAD-box ATP-dependent RNA helicase 20; TrEMBL-Plants: tr|A0A151SUB2|A0A151SUB2_CAJCA DEAD-box ATP-dependent RNA helicase 20; Found in the gene: LotjaGi3g1v0025200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:2750239..2753949) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGCCGCTACGACAGCCGCTCCGCCGACCCCTCTTCATACCGTGATCGAAGAAGGTAACCAACCATTTGACTCCAATC TTTCTCTCTTTCTACTTCCAGTTTTAGGGTTTTACGGAACTGCTCATAGTTTAGTTAGTTTCCAATTCCGTCAAAACTCG TTGCTGAAATGGTGTGTTTGTTTGTTGATTCTCAGTGATTCTGGGCTGGGTGCACCTGCTGCCTCCACCGGGTACGGTGG TTCGAGCATAAAGAATCATGACGACGGTGGTTCAGGGTCGCCCCGTAAGATAAATTTGGATGGGTTGTCGCATTTCGAGA AAAACTTCTACACTGAATCACCCTCTGTTAGGGCAATGACTGAAGCAGAGGTTGATGAGTATCGCCTGCGACGGGAAATC ACAGTTGAAGGCCGAGATGTTCCCAAACCCGTCAAGACATTTAACGATGTCGGTTTTCCAGGTACTTCGGAAGTATGATT GTCTTCATCAAATTAGGGTTCCTAGTGAATTTATAGCTTGTTCGATTATGTGGTCGGAGCTCCGTAATTACACATAGATT ATGGGATTTCCATAATTTGGATTGTGTGCAATCCAAACCTGTTATTAGCTTATTTAGAAGGAAGGATGGCATTGCCTGAT TTAATTTCGTTAGGTTCATTCATGTGACCCTTACCCAACACATTAAGCTTTTGGGATAATTGGTTGTTTGACATGGTATC AGAGCTTCTATGACCAAGCAGTCTAGTGTTCGATCATTGCCACCCCCAGTTCTTCTAATAAAAAATGAATTAAAGCACAC GGTAACCAAAATGTTCATTAGATTCAGTGCTTGAGTGAGCTATTGGTGATTAAGCATAACCAATCGAAAGCTCAAGATAC ATTGAAACAATAAAAAAGAAAGTTACAAAAAAACATGTAGGAGTTATTTTAATTATTGTGTTTAGCTTTTGATTTGTTTT GGTTGTGCCTAATGAGCACTGTGCTCCATGTAAGTATTATTCTATGGGAATTCTGTACTGACCGTGATTTGATGTAGAGT ATGTGTTGGAAGAAGTTAAGAAAGCTGGCTTTGTTGAACCTACACCCATTCAGTCACAAGGTTGGCCAATGGCTTTGAAG GGGCGTGATCTGATAGGAATTGCAGAAACCGGTTCAGGGAAGACACTTGCGTACTTGTTGCCTGCTATTGTGCATGTTAA TGCGCAGCCAATTCTAGGTAAGCATCTAAGTGAGCAATGTGATTAAGATGTGAATTGTAAATGTGCTTGTATTTGTGCCA CCTTGTATTTTCTGTCCAGCAATTGATAAATAATCATTTTTCAGACCCTGGCGATGGACCTATTGTGTTAGTATTGGCCC CAACACGTGAACTTGCTGTCCAAATACAACAAGAGTGTACTAAGTTTGGTGCATCGTCAAGGATTAAGAGTACGTGCATA TATGGTGGGGTTCCAAAGGGGCCTCAGGTGCGTGATCTCCAGAAAGGTACGTGGTGAAGTAAGTATTACAAAGCCATGAC TCGGGATAAATGACTTACTCTTCTATTGTAACTTTCATGGAAGGGTCTTTATTTTACACTGTTTTTTAAAATATGCTGAT GCTTCTGTTTATTTTTGGGGTTAGGCGTTGAAATCGTTATTGCCACTCCGGGAAGGTTAATTGATATGCTTGAGTCACAT CATACTAACTTGCGAAGGGTCACATATCTGGTATTGGATGAAGCTGATAGGATGTTGGACATGGGGTTTGATCCTCAGAT ACGGAAGATTGTCTCACAGGTGCCTTTATTTTCTATCTGATTAATATTTTAAAATAGCACAATATTAAGAAATGGTATGT AGTAGTATTATCAAAGTAGGTCGCTGAAGCTGCAGATAATATTGTGTTTAGTCTCCTGGGTATCTGATTAGTGTCTGGGT TTGGTTTTTCTTTCTTTATGTAGATTCGTCCTGACCGTCAAACTCTGTACTGGAGTGCTACCTGGCCAAAGGAGGTTGAA CAATTGGCAAGGAAGTTCCTTTATGATCCATACAAAGTAAGAGATCTTTTAGTGCTGGGACATGTTTTGTTGTCTTTTTT AATATCATTCCTCTGCCTGCTGATATGGTTTTGTTCTGAAATATATAATGTTGTAAGAAAGGTGCATGTTTATTCATGCA TGGTATTGTATTTGTGAGAATTTTGTGCTTATATTGAAGGTTGAATTAACAACTTTTATAACCATTGTGCAGGTAATTAT AGGTTCTGAGGATTTAAAAGCTAACCATGCTATAAAGCAATATGTTGACATAGTTCCTGAAAAGCAGAAATATGATAAGT AAGATATGATCTACATGATTTTTACTTTTTAATTTTAATACATCATCACATTGGACCACCTAACTGAGTCATCTTGTCAT CTTATTTCAGATTGGTGAAGTTGCTGGAGGACATCATGGATGGCAGCCGAATATTGATATTCATGGATACTAAGAAAGGG TGTGATCAGATTACTAGGCAGCTTCGTATGGACGGTTGGCCTGCACTTTCAATTCATGGAGATAAAAGTCAAGCAGAAAG AGACTGGGTGCTCTCGGAGTTTAAATCTGGAAAGAGTCCTATAATGACGGCGACAGATGTTGCAGCTCGCGGATTAGGTA TGAATTTTTTTGCTTGATTGTTGAATGATATTCTTATTCAGTATAGTAAATTAAAGTAAGTGCTTTAACTCTAGTTTTGG AAATAGTCAGTAATTTTATTTGAAGAAGATATATCTGTTAAGGCTGGTTCCTTCCATCTTGTTTACCCTTTTCAAGCCAC TTTTGATTACTAGATTTTATTTTCATTTTCTCTTTCCTATGCAAGAAACTGACTTAATGTATGGACGAAAGAATCTTAGG TGTCCTTAGTCCTCGCCGACTGCCATTATAATTTTTCATAGTTATGCAGCCACCAGTTCATATTGGCAGTATTCTCAGTG ATGGATAAATCTCTACATAAATTGGTTGGCATAAGCTAGAATTGACTTGTGCTGCTTGTCAATGTCTTATTATGTTAATG TGGTGACTTAAATTGGCAAAAGGAACAACTTTTTTTCCATAAAAGGTGTCTTTCTCTCATTTGTGCTTGGCTGCACCACT GCTAGAGGAATTATCACTTTTTAACTTACTCCAATAGTGGTGCCTGTATGACATGATCTGATGATCCTATATATTATTTG GTTACTTACAGATGTGAAGGATGTAAAGTATGTGATAAATTATGACTTCCCGGGATCACTTGAGGATTATGTTCATCGCA TTGGTCGGACTGGGAGAGCTGGTGCAAAAGGAACTGCGTACACATTCTTCACAGCTGCTAATGCCAGATTTGCAAAGGAA CTTATAACTATACTCGAGGAAGCTGGACAGAGAGTGAGCCCTGACTTGGCAGCAATGGGACGAGGTGCACCTCCTCCACC CTCAGGTTAGTTTACTGGGCCATATGTAAGCCAAGCTTGTATATAATACACGTGTATATATTGGTTCCACGCTGTCCTAT TTCTGGTTGAATGGTATGCTTTAATATGACTCTGTGACATGGATCCAAAGGCGGTTATTGTATCTTTGGTCTCTTCACCT GGCTTGTTTAATAAAATAATCTGTTTCTTTTAACTTTTTGGAAAAAAAATCAGAATCTCAAAGAAATTAGCTTTCTGATT ATTTTGAGAAGCTACACTGACTCACTGGTAG
CDS sequence (LotjaGi3g1v0025200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCCGCTACGACAGCCGCTCCGCCGACCCCTCTTCATACCGTGATCGAAGAAGTGATTCTGGGCTGGGTGCACCTGC TGCCTCCACCGGGTACGGTGGTTCGAGCATAAAGAATCATGACGACGGTGGTTCAGGGTCGCCCCGTAAGATAAATTTGG ATGGGTTGTCGCATTTCGAGAAAAACTTCTACACTGAATCACCCTCTGTTAGGGCAATGACTGAAGCAGAGGTTGATGAG TATCGCCTGCGACGGGAAATCACAGTTGAAGGCCGAGATGTTCCCAAACCCGTCAAGACATTTAACGATGTCGGTTTTCC AGAGTATGTGTTGGAAGAAGTTAAGAAAGCTGGCTTTGTTGAACCTACACCCATTCAGTCACAAGGTTGGCCAATGGCTT TGAAGGGGCGTGATCTGATAGGAATTGCAGAAACCGGTTCAGGGAAGACACTTGCGTACTTGTTGCCTGCTATTGTGCAT GTTAATGCGCAGCCAATTCTAGACCCTGGCGATGGACCTATTGTGTTAGTATTGGCCCCAACACGTGAACTTGCTGTCCA AATACAACAAGAGTGTACTAAGTTTGGTGCATCGTCAAGGATTAAGAGTACGTGCATATATGGTGGGGTTCCAAAGGGGC CTCAGGTGCGTGATCTCCAGAAAGGCGTTGAAATCGTTATTGCCACTCCGGGAAGGTTAATTGATATGCTTGAGTCACAT CATACTAACTTGCGAAGGGTCACATATCTGGTATTGGATGAAGCTGATAGGATGTTGGACATGGGGTTTGATCCTCAGAT ACGGAAGATTGTCTCACAGATTCGTCCTGACCGTCAAACTCTGTACTGGAGTGCTACCTGGCCAAAGGAGGTTGAACAAT TGGCAAGGAAGTTCCTTTATGATCCATACAAAGTAATTATAGGTTCTGAGGATTTAAAAGCTAACCATGCTATAAAGCAA TATGTTGACATAGTTCCTGAAAAGCAGAAATATGATAAATTGGTGAAGTTGCTGGAGGACATCATGGATGGCAGCCGAAT ATTGATATTCATGGATACTAAGAAAGGGTGTGATCAGATTACTAGGCAGCTTCGTATGGACGGTTGGCCTGCACTTTCAA TTCATGGAGATAAAAGTCAAGCAGAAAGAGACTGGGTGCTCTCGGAGTTTAAATCTGGAAAGAGTCCTATAATGACGGCG ACAGATGTTGCAGCTCGCGGATTAGATGTGAAGGATGTAAAGTATGTGATAAATTATGACTTCCCGGGATCACTTGAGGA TTATGTTCATCGCATTGGTCGGACTGGGAGAGCTGGTGCAAAAGGAACTGCGTACACATTCTTCACAGCTGCTAATGCCA GATTTGCAAAGGAACTTATAACTATACTCGAGGAAGCTGGACAGAGAGTGAGCCCTGACTTGGCAGCAATGGGACGAGGT GCACCTCCTCCACCCTCAGAATCTCAAAGAAATTAG
Protein sequence (LotjaGi3g1v0025200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSRYDSRSADPSSYRDRRSDSGLGAPAASTGYGGSSIKNHDDGGSGSPRKINLDGLSHFEKNFYTESPSVRAMTEAEVDE YRLRREITVEGRDVPKPVKTFNDVGFPEYVLEEVKKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVH VNAQPILDPGDGPIVLVLAPTRELAVQIQQECTKFGASSRIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH HTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARKFLYDPYKVIIGSEDLKANHAIKQ YVDIVPEKQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTA TDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQRVSPDLAAMGRG APPPPSESQRN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 52 | 52 | - | – | |
| MobiDBLite | 1 | 17 | 17 | - | – | |
| PANTHER | 51 | 471 | 421 | 8.2E-187 | – | |
| PANTHER | 51 | 471 | 421 | 8.2E-187 | – | |
| Gene3D | 61 | 304 | 244 | 9.6E-89 | – | |
| ProSiteProfiles | 99 | 127 | 29 | 11.752 | ||
| CDD | 110 | 305 | 196 | 1.85351E-145 | – | |
| SMART | 118 | 321 | 204 | 2.5E-69 | ||
| Pfam | 123 | 294 | 172 | 5.0E-50 | ||
| ProSiteProfiles | 130 | 305 | 176 | 33.402 | ||
| SUPERFAMILY | 171 | 455 | 285 | 4.92E-78 | ||
| ProSitePatterns | 251 | 259 | 9 | - | ||
| Gene3D | 305 | 479 | 175 | 9.1E-61 | – | |
| CDD | 318 | 448 | 131 | 4.94449E-63 | – | |
| Pfam | 330 | 439 | 110 | 6.9E-30 | ||
| ProSiteProfiles | 333 | 478 | 146 | 23.958 | ||
| SMART | 358 | 439 | 82 | 4.3E-34 | ||
| MobiDBLite | 471 | 491 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi3g1v0025200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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