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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0025800 |
| Transcript ID | LotjaGi3g1v0025800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WD-40 repeat protein; TAIR: AT2G19520.1 Transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|O22607|MSI4_ARATH WD-40 repeat-containing protein MSI4; TrEMBL-Plants: tr|A0A0R0GYQ4|A0A0R0GYQ4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0025800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:2801016..2807649) extracted from Lotus japonicus Gifu genome v1.2.
ATTATTTGTGAAATGTGCGGGAAATACAAATACTAGTTCCAATCTCTCTCTCTCTTCACAAGAACAACACAGTTCAGTTC ACCAGAGAGAGAGAGAGAGAGAGAGAAATGGAGGAGGAGAAAGTGAAAGAGAAAGAGCAAGAGAGGAACGCGGTGGAACA ACGCTACACACAGTGGAAATCTCTCGTTCCCGTTCTCTACGACTGGCTCGCTAACCACAACCTCGTCTGGCCTTCACTCT CATGCCGATGGGGTCCTCAACTCGAACACGCTACCTACAAGAACCGCCACCGTCTCTATCTCTCTGAACAGACTGACGGC ACTGTTCCCAACACTCTCGTCATCGCTAATTGCGAGGTTGTTAAACCTAGGGTTGCTGCTGCTGAACACATTTCACAGGT AGGTAGGTCAATTTCATTCTGCATTTGCTACTTTCTTCTTCATTGAAATTGAAATTGAAATTGAAGTGGGTTTTGTTTTG TGTGAATGGTTTCAGTTCAATGAAGAAGCTCGCTCTCCCTTTGTCAAGAAGTTCAAAACTATTCTGCATCCTGGTGAGGT AGCTTTCTGTGCTTACAATTTGTAATTTTTTAGTCTGTGGAAGTGAATGATGTTAATCACTTTTTGATTGAAAATCACTT TTTTATTCCTGAAAGACCAAAATCACTTTTGTTTTATGGGAATGATCATTTTAGTTCATGAAAAATAATTACCCTTTTGC ATTTTCGGATCTTTCAATGACAAAAGATGTGAAATTTCATGTTTTAGGGCTAAAGTGACCCGATATTTTTCGGAGTCAAC ATGATAGTCTAGTCGATAAGAATAGCTTTTTCATTCCTGAAAGATCAAAATCACTTTTTTTATGGGATTGATCATTTTAG TACATGAAAAAGGATTACCCTTTTGCGTTTAGGATCTTTCAATGATAAAATGTTAAATTTCATGTTTTAGGGCTAAAGTG ACCTGATATCTTTAGGAATCAAGATGATAGTTTACTCATTTTCAGAGGCAGGGCCTAGGTACACTTAAAGGGGCAGCCCC CTCCCCTCTAAGGGTGTGTTTGGGAGTTTAGTTTTCGAGGGGAGGGAAGGGAGAGGCTTCCAAGAAGTCTTCCCCTTGTT TGTGAGTTTTTAAGAAGGGGGTCCATTTTAGTCCCTAAAGATATTGGTCACTTTTTGATCAGGTGGATCATTTTAGTCCT GAAAAGATTGAAAATTTATATTTTTTTCAGATGTAAATCACTTTCTATAGGATCGATTATTTTAGGGTGGGTTTGTTTAA ACAGTTTAATTAAGCACTTATTATCGCGTAACTGCCTATTCATAAGCTAATTTGATAAAATTATTGAAATAAGCTAAAAA TAGGTTATGTGTAAGCATAAGCTCTTATTCATTAGCTAATCTGAACAACTTACGAAAATAAGCTCAAAACAGGTTATAGT TAGGTTGTGAGCTATATACATAAGTTCTTTAAGCGTTTATACTATAAGATAAACTCAAATATGCATTTTTAAAAGGAGGA CTTAGTCCCGTAAATATAAAAATCTATTTCCTTCATTCCACAACGATGAAAAAGACTTCATTTTGCGTTTTCTGTCTTCC AATGACAAAAAAAATGAAATGTTTGAGGACTAATAGCATGTTTGAATACTTATTTTTTCTTGGAAATCAATTCCGGTACC TAAAATCTACTCATAAAAGTGACTGACCACATACCTTTAGAGGATCAAAATGATAGTTTACTCATTTTATTATTTTTTCA TCTTTGCCTGCTACACATTGGTGGTTACTAATAATACATGCTATATTCTCTATCAGGTGAACAGAATCAGGGAACTCCCG CAAGATGGTAAGATAGTAGCCACACACACAGATAGTCCCAATGTAAGGAAAAGTTTTCTATACTTCATTTTCCCTTTCAA ACTAGACTGTGAAGAATGAGATTTTAAATATTTTATTTTCACCCCCCATTTTGCTATTAGTCTAGTCAAAAGTCAATGGA ATTGTGATTTTTCATATTGTATAACAGGTACTGATTTGGGATGTTGAATCTCAACCTAATCGTCAGGCTGTTCTAGGGGC TCCCACTTCCCGCCCTGACCTGGTTTGTATTCATACATTTTTTTTTTTCATCACCCCTTTCTTTACAGTGGTGTATTATA TTACTTGAAAAAAATATGATGTGACTATTTGCTAGTTTGTTACTGTCTGAAGAATAAAAATCTGATAATAATCGACAGGA CAAGATAACTAGTAAAGAACTTGAAGTACTTGTAACTCGTGTTTGTTGCGATGGAAATTTTAATTAAAAGTTTGAATTCA GCATTTTTTGCCTAATAAGCTTTTGACATATCTTTATTCACAAGTCGTGCACCTGAAATTTCAGCCATACCTTTTTGCAG GTATTGACTGGGCATAAGGATGATGCTGAATTTGCACTGGATATGTGTCCTACTGAGCCCTTTGTTCTTTCCGGAGGTTG GACTACTTTTTATTGCATTTTCATTGTAAAAGATGTCAAAATTCAGTTCGTATTGGTTTAGATTTCATAATCAAGCATGG ACATTTTGGGATCTGCTGTGGGCATTATCTTAAAGTTTGCAGGTTATCAAGATCAAAACACAAACACATTAGTGTTTAAA ATTGTCCTTATCAACAACACAAATACGGTTATAGAGTCTTTGTTAGATGTGTTAAACTTTACCTATTAATTACCACTGAA AGAAAAAGCAAACTGTTGATATTCTTTATCTTTCTAGATTTGCTTGCATATGCTATCAATTCTATTTTGTTGACCATGTA AAATTCATTATTGCAGGGAAGGACAAGTGTGTGGTCCTATGGAGTATTCATGATCATATTTCAACTTTAGGGGTAGAAGC AGGATCCACCACTCCTAAACAGGGATCGGGATCTAAAGTTACGGGCAATAGTGAGAAAACTACAGAAAGCCCTTCAGTTG CTCCTCGGGGCATCTACAAGGGTCATACAGACACTGTTGAGGATGTGCAATTTTGCCCATCAAGGTAGCTGTTTGCTTTA GTCATGCTTGTGTCAAGTTATATGTCAAAATTATTACTCCCTCTGTTTCCTATTATAAGTCATAAATAACTAATTCTCTT AGATTAAGAAAAGTAGTTACTAGTAATAAATTTGTAAAAAAAATGATTTACTTTCCTAGATTACCCTTATTTACTTTCCT ATAATTTTCTCTCTCCAAGTTAATACTTCTAAAGTTTATCATCTCTTTCATATTAAATATGAGGGTGAACTTGGAAAAAA TTATTTAATGCTTCCTAGATATTAGAAAGTGACTTATATTTTGTAACAAATTTTTTTCAAAAAATGTGACTTATAATAGG GAACAGAGGGAGTATTATTTATGGTTTTTAAGTTTGTTGAGATACCTTATCATGTGTTATATCATATATGTACTTGGAGT TCATTGATACCTCACTCTCGTTTCATTTGCTATATTATATATCATGTGTTACCGGACTAGTCATTTTGGTCACTTCTTTG AATTTTATTATTTGATTTAGTATTTTAGTTATGATAGAATTTATTCTGTTAAACAAGTCTGTTTTATTTTATCAAAATAG AAACATGGGCTGAGTTCAACATGAAAAGTTGAATTTTAAAATATCAATTCTAAATTCTCATTTGGGTGTCAGTCAAATAC TAATGGATTAACTCATTAACGTGCTGATTTTCGGATTTATTTTTTCCTTTATCGTTGTTGTTATTATTAATGGGCCCATT CTATCATTTTCTGATTTACTTCCTGCTTTTCTTTTGTCACCATGAATTGAAGTGCACCGGAGTTCTGTAGTGTTGGTGAT GATTCTCGTCTCATACTCTGGGATGCACGAGTTGGATCAACTCCAGTTGCCAAGGTATGAATGCATCAGTTCATCTACGT TGCCTGTTTTGTCATAATTTAAACACCAAAACAATTAGTTCAAATTGACGAGAGAAACATTCTGTTTGGTATCATTATTA TATTCATTACAAGTATATGACTTGTGGAATTTGAATTTCACAGTAAGGCTTTTGGTGGCCTGAGAATAATGGACCTAATC CTTGATGGTACAATGTACAAAAAATTTATGTCATTACTATTTCTTCTAAGAGGAAAATAACTTGAGTACAACTTGTGTGT AATTGGGGCTTTCCTAATGTGTGGATTTTTGCCATATAAATTCAATTTAGCAGAAATCTTGTCCTTTATGTTTGTTTAGT TTTTTTACTCAACTTCTATTGTGAAACATTTCTAGTTAAATATGTATGTTACTTATATTTTTCTTTTTTTCACGGTCATC CTTTATCCAGGTTGAGAAGGCGCATGATGGAGATCTTCATTGTGTTGATTGGAATCCTCATGATATAAATTTTATTCTGA CTGGGTATCCTGTGGCCCTCACTTTTTGATGAACTTGGATTATGATTTATATGTCTTTCAGTCTTTCTTATGTGTATTTT TTGTTTTGGGTTATCTTTTTTGGTTCTTAATTCCGTTAACGGGTTTAACTTAAAATTTGGATCCTTTTCCTAAGCTACGA ATGAAAACAGTTTATTGGACTTCATTCTAATTTTCGTTGCTTTGACTTCAGTTCTGCTGATAATACGGTTCACATGTTTG ATCGCCGGAAATTTAACAATCGCGGACTTGGGTCTCCTGTTCATAAATTTAAAGGTCATGATGCTGCAGTCCTCTGTGTA CAGGTGGCTGGGAGATCCTGCCTTCTTCAATTGCAGTTTAAAACTTCAAATGTACATCAGTTAGGGTCATTTTAGTTCAG TGATTGTTAACCACACTTTTTATCTGCTTCAGTGGTGTCCTGACAAATCATCTGTATTTGGAAGTGCTGCTGAAGATGGC ATTTTGAACATCTGGGACTATGAGAAGGTTTGAACTCTTAAAAATTTCAAGTCATATACCTTTTTGAAATATAGCAGTTA GAAATACCCTAATCTTATATTATCAATGAATTGTATGAGCCTATCTAGGACATGTCAAAAGAGATCCATGTGCCACATTA AATATTTAGAAGAGGCTTTCTTATTGTTTATCTGTTATTTATTGCTAGGGTTAGTCCTGTCATGACAGTTTCCTAAAACA TCTCAATGCTTAGTAAGGCCAAAAACCCTGTTGACATAGGATCTTCCCCTTGCCTAAAAGCAGTGCTGTTACTTGCGGAT TGCGGAAAATAGGGGAAAGCAAAAAATCCGCTATGCATCAGAGTAGAAAATAGTAAAAAATAGCGAGCCCTCAGAGCGCT ATGCTATAGCGATATCCGCTATTTGACAACACTGTCAATAAGGGTTTTCTACTTTTCTTTGTAAAACTAGTCAATATCAT GTTTGAAGGGCTAGCTTATAGCTATTCTATAATCCTACTTATTATATAGTGTTTTATCTTATACTGATCTGGACACCAGA AGTATTTTATTACTCCTACATTAAATGTCATGTTCTTGCTTTTGTTATCTGTATATTTTTCCGGTCTAATGTAAAATTTG CTACTTTTTAGGTGGATACAACAGGTTCGGCGGCTGATCCAAAAGGATCAGATAACCCCCCTGGTTTATTCTTTCGACAT GCTGGGCATAGGTATGACGATCGCAAATGGTTTCACACATTTTCATTTCTCTTTATTCAGTTCTTTGGAGTTAAACTTGA TGGACTCTTTCAACAATGTTTCAATACCAAAAAAATGTGTACTTGTGCATCCAGGGACAAGATTGTTGACTTCCATTGGA ATGCTTCTGAGCCATGGACGATTGTTAGTGTCTCTGATGATTGTGGAAGTACTGGTGGAGGTGGCACCCTACAGGTAAAG CATATGTTTTTTGTTATCTTTTGTCAAAAGATTTCTCATCCATACATACATTTTGCTGCATAAGGGAGTTGAATTTTGCC AAACCTTATTATGATACTTACTATGTTTGATTTATTTGCAGATATGGCGGATGATTGATCTGATTTATCGACCTGAGGAG GAGGTGCTGGATGAACTTGATAAGCTCCAATCTCAAATTACTGGAAGTAATTGATGACATGTTTGAAAAAAATTTGTCTT TCGGCCAATGCGGGATACAGTGTAGAATGTTAATAGATCCTTTTATTTTTAAGGGGGGAAAAATCAGTGTTAAAAAAGTA AAAGATGACTCCATGGTTCAGTAGAGAAAAACTCGAAATATTTGGATTTCCTGCTTATTCTTTCTTTGATATATTTTCAG TTTTGACAAAACTAAATGAACCTTCCCCACTCATCTTCACCATCTACATTTTTTCAAAAAGATTAAAATACTCACCATCT CCTTGCTTATCTAAAAAAAAAACTCACCATCTCCTTCTCTTCACAACTACCACATTTAATTGACTATACTTTTTAAAATT AAATGACGGGTAAAAACCAAATTTAGGTTTCAGGTTTTAAAATACGAAATCTTTGAAAACTTGAGGGTATTTTTGGCACT TGAGCTATATGGTGAAATCAAAATCGTGATGGCCAGACACAAGCTAAGAAAAGTTTCTTATGTTCATCGTGATTTTAATT CACTATGATTTTTCACTGTGTATCTCAATTTTCTCTATGAAAGCAAAGTAGGAAGCCCGTTTTGCACTTTTTGA
CDS sequence (LotjaGi3g1v0025800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGAGGAGAAAGTGAAAGAGAAAGAGCAAGAGAGGAACGCGGTGGAACAACGCTACACACAGTGGAAATCTCTCGT TCCCGTTCTCTACGACTGGCTCGCTAACCACAACCTCGTCTGGCCTTCACTCTCATGCCGATGGGGTCCTCAACTCGAAC ACGCTACCTACAAGAACCGCCACCGTCTCTATCTCTCTGAACAGACTGACGGCACTGTTCCCAACACTCTCGTCATCGCT AATTGCGAGGTTGTTAAACCTAGGGTTGCTGCTGCTGAACACATTTCACAGTTCAATGAAGAAGCTCGCTCTCCCTTTGT CAAGAAGTTCAAAACTATTCTGCATCCTGGTGAGGTGAACAGAATCAGGGAACTCCCGCAAGATGGTAAGATAGTAGCCA CACACACAGATAGTCCCAATGTACTGATTTGGGATGTTGAATCTCAACCTAATCGTCAGGCTGTTCTAGGGGCTCCCACT TCCCGCCCTGACCTGGTATTGACTGGGCATAAGGATGATGCTGAATTTGCACTGGATATGTGTCCTACTGAGCCCTTTGT TCTTTCCGGAGGGAAGGACAAGTGTGTGGTCCTATGGAGTATTCATGATCATATTTCAACTTTAGGGGTAGAAGCAGGAT CCACCACTCCTAAACAGGGATCGGGATCTAAAGTTACGGGCAATAGTGAGAAAACTACAGAAAGCCCTTCAGTTGCTCCT CGGGGCATCTACAAGGGTCATACAGACACTGTTGAGGATGTGCAATTTTGCCCATCAAGTGCACCGGAGTTCTGTAGTGT TGGTGATGATTCTCGTCTCATACTCTGGGATGCACGAGTTGGATCAACTCCAGTTGCCAAGGTTGAGAAGGCGCATGATG GAGATCTTCATTGTGTTGATTGGAATCCTCATGATATAAATTTTATTCTGACTGGTTCTGCTGATAATACGGTTCACATG TTTGATCGCCGGAAATTTAACAATCGCGGACTTGGGTCTCCTGTTCATAAATTTAAAGGTCATGATGCTGCAGTCCTCTG TGTACAGTGGTGTCCTGACAAATCATCTGTATTTGGAAGTGCTGCTGAAGATGGCATTTTGAACATCTGGGACTATGAGA AGGTGGATACAACAGGTTCGGCGGCTGATCCAAAAGGATCAGATAACCCCCCTGGTTTATTCTTTCGACATGCTGGGCAT AGGGACAAGATTGTTGACTTCCATTGGAATGCTTCTGAGCCATGGACGATTGTTAGTGTCTCTGATGATTGTGGAAGTAC TGGTGGAGGTGGCACCCTACAGATATGGCGGATGATTGATCTGATTTATCGACCTGAGGAGGAGGTGCTGGATGAACTTG ATAAGCTCCAATCTCAAATTACTGGAAGTAATTGA
Protein sequence (LotjaGi3g1v0025800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEEEKVKEKEQERNAVEQRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEHATYKNRHRLYLSEQTDGTVPNTLVIA NCEVVKPRVAAAEHISQFNEEARSPFVKKFKTILHPGEVNRIRELPQDGKIVATHTDSPNVLIWDVESQPNRQAVLGAPT SRPDLVLTGHKDDAEFALDMCPTEPFVLSGGKDKCVVLWSIHDHISTLGVEAGSTTPKQGSGSKVTGNSEKTTESPSVAP RGIYKGHTDTVEDVQFCPSSAPEFCSVGDDSRLILWDARVGSTPVAKVEKAHDGDLHCVDWNPHDINFILTGSADNTVHM FDRRKFNNRGLGSPVHKFKGHDAAVLCVQWCPDKSSVFGSAAEDGILNIWDYEKVDTTGSAADPKGSDNPPGLFFRHAGH RDKIVDFHWNASEPWTIVSVSDDCGSTGGGGTLQIWRMIDLIYRPEEEVLDELDKLQSQITGSN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Coils | 6 | 26 | 21 | - | – | |
| Gene3D | 7 | 455 | 449 | 5.9E-105 | ||
| PANTHER | 10 | 461 | 452 | 1.3E-265 | – | |
| PANTHER | 10 | 461 | 452 | 1.3E-265 | – | |
| Pfam | 19 | 84 | 66 | 2.1E-17 | ||
| SUPERFAMILY | 107 | 439 | 333 | 9.99E-45 | ||
| SMART | 160 | 200 | 41 | 0.047 | ||
| Pfam | 165 | 200 | 36 | 0.023 | ||
| MobiDBLite | 211 | 244 | 34 | - | – | |
| MobiDBLite | 211 | 236 | 26 | - | – | |
| SMART | 237 | 277 | 41 | 2.8E-5 | ||
| Pfam | 242 | 277 | 36 | 0.25 | ||
| ProSiteProfiles | 244 | 380 | 137 | 21.911 | ||
| ProSiteProfiles | 244 | 286 | 43 | 10.241 | ||
| SMART | 281 | 322 | 42 | 5.9E-6 | ||
| ProSiteProfiles | 289 | 322 | 34 | 9.005 | ||
| Pfam | 290 | 322 | 33 | 0.016 | ||
| SMART | 331 | 371 | 41 | 1.5E-8 | ||
| Pfam | 332 | 371 | 40 | 4.0E-6 | ||
| ProSiteProfiles | 338 | 380 | 43 | 12.547 | ||
| SMART | 390 | 437 | 48 | 12.0 | ||
| Coils | 446 | 464 | 19 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0025800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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