Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi3g1v0028600.1

Overview

Field Value
Gene ID LotjaGi3g1v0028600
Transcript ID LotjaGi3g1v0028600.1
Lotus japonicus genome version Gifu v1.2
Description Lipoxygenase; TAIR: AT1G55020.1 lipoxygenase 1; Swiss-Prot: sp|P14856|LOX2_PEA Seed linoleate 9S-lipoxygenase-2; TrEMBL-Plants: tr|G7IS29|G7IS29_MEDTR Lipoxygenase; Found in the gene: LotjaGi3g1v0028600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:3146179..3152287) extracted from Lotus japonicus Gifu genome v1.2.

CGTGGCCCGATTTTTGGAACAAGTCCACCACCACCATATTATTCCTCTTCATAAAATATTGTTTTTAAATTTTGATACTA ATATAGTAGTCGTAATTCTAAAAGAATATGAAAACTCTACTCAACTCTGTACAATATAAATACAGCATAGCTTGCTTGGT TTCTCGCAAGCAATTCACTCTGCTAAAATTAATATAAGTAGTATAGTATTGCTGGTGTAGCTTTGAGGAAGTTTCAAAAT GTTTTCAGGGGTGAGCGGAATCCTCAACAGAGGCCAAAAGCTCAGAGGGACAGTGGTGTTGATGCGCAAAAATGTGTTGG ACTTCAACAACATTGCTGATATCGGCACCGGAAACCTCGGAGGAGTCATTGGCACCGGGCTCAACGTCATCGGTTCAACC GTTGATGGCCTTACTGCCTTCTTGGGTCATAGCGTCGCCCTCCAGCTGATCAGTGCCACCAAGGCTGATGGTTTGTTCTT TTCTTTATAAACTTCTGGGATTGTTAACAAACATGTCTAGCTATACTAAGTTTTAACAAGTTAGTATAAATATTTATCGG TTTATTTGCGTAAGCTTATGAAAATAGTTTAAGGTCTATATATACAATTTTTTAAATTTATTTTCATAAGCTATTTATAT TAGCAAATGACTTGGCGCTTATATATAATTACGTTATTTTTCATATTGTCTAGCGGATTGAGATCTTCTCTGTCTTCATC ATTTAGTGTTTCTTTCGTGTCTCACCAATCAAATTGTACATTTAATTTTAAAAAAGGATGGTTATGACACTTATAAACTT ACATGAGTGATATTTAATAACATGACATTATTTAATTTGTAGAATATAGAAAAACACTAAATGAAGAAAGAAGATGACAA TCGCTTTTGCAGCTAATCCCTGTGAATGTAAATTTTCTTTCTCTTTTTATGTGTCTTCTTTCATGTTTCACTAATAAAAA TTTATCATATCAACTAAAAAAGACGTGAGTGATGTGACTACAAACTTAATGAATGTTTTTTAATTGAGATGATAAAATTT TATTGGTAGAACAAAGAAATGATAGTAGTCGATTTCCCTTATTCTTACCCTACTTGGACTAGTATCTTTGGCACAAGAAT GAAAAAAAGAGGGTTGATCCGTATCATCTTGATTTAATTCTAATTTTTCTATTTTTTCAAGAATTAAGAATATCGAGAGT CGTTAAGAATATCGAGAGTCGGGTTCTTGTCCTACCCATAGCAAACCGAACACGCTGAGCTAAATCTTCTTTTATAGAAA TTGCTCATGATACATTTTTCTTTGAAAATTTAACTTACTTGTATCAGTCACTGAATTTTTGTGTGAATCTTTTGTAGAGA ATGGAAAAGGGAAAGTTGGAAAGGACACATTTTTGGAAGGCATCATTGCCTCGCTACCAACCTTGGGAGCAGGAGAGTCT GCATTCAACATTCACTTTGAATGGGACGATAGCATGGGAATTCCTGGTGCATTTTACATAAAGAACTACATGCAAGTTGA GTTTTTCCTCAAGAGCTTAACTCTTGAAGATGTCCCAAACCATGGAACCATCCGTTTTGTTTGCAACTCTTGGGTTTACA ACTCAAAACTTTACAAATCCCCACGCATTTTCTTTTCCAATAAGGTATGAAATTATTGTTTTCTCAGCAAGCAAATTTAT CAAATCAAATATGGTGATTATATATTTATATTTATATATGTATGTACATACGATTTTTGGCGGTCATTCAATCAGCATAG CGCTTACCGGCAGTCTATAACCTCTGCCAACATTAGCGGCTGGATTGATGTTTGTAAAACTTATATGTACACATGACATT TTCGAATCAAATATTAATATTTTTTCCTTAACATTATGCTTTCAATGAAAAATTGTACATAATATAATATGATGCAGACA TATCTTCCAAGTGAAACACCATCTCCACTAGTGAAGTACAGAGAGGAAGAGTTGAAGATTTTAAGAGGAGATGGAAAAGG GGAGCGCAAGGAATATGAAAGGATCTATGATTATGATGTCTACAATGATTTGGGTAATCCAGATCACGGCGAAAATCATG CTCGACCGATTCTTGGAGGGTCTAGCACCCATCCATACCCTCGCAGGGGAAGAACCGGTCGATATCCATCAAGGAAAGGT TAGTCTAGCTAATATGTTTTTCAATTAAACGAAGGAAAATGATCGGTAGACACCAAATTAAAGAAGAGCGGAGTAGCAAC TATAGAGACAATAGATATTATATATGATCATATGTGACAGAGATAGAGAGAAAAATGATATTGAAAGTTGCAGCCATAAA TATGATTTGTCTTGAGCTTTTGGGTGTTTGTGTCTATTGAGACCTCAAACAAGAATATATCTTACAATGATTGAGCAGAA ATCAAAGAGAGTTGTTTAAATGAGTGAATGAAACAATATGTCATAGTTTCTGAAATATATACATTTTTTATGTGCTTTGA TTCTTTGTTTTTTCAACTATTAAGTTCTTATTATTGTTTACAAATTAATATACCCTACTATTTTTGTTAAACAGATCCAA ACTGTGAGAAACCAGGGGAAGTTTATGTTCCAAGAGATGAAAACTTTGGTCACTTGAAGTCCTCAGATTTTCTTACATAT GGAATCAAATCTTTAACTCAATTTGTGTTACCAGCTTTCGAATCTGCGTTCGATATGAATTTCACTCCAAATGAGTTTGA TAACTTCCAAGATGTGAGAGACCTTTTTGAAGGTGGAATTAAGCTTCCTTTAGATGTAATCAGCACAATTAGCCCCTTAC CAGTTATCAAAGAACTCTTCCGTACTGATGGTGAACAGTGCCTCAAGTTTCCACCACCTCACATCATTCAAGGTGATATT CATAATCAATTCTGATATTTAGAAGCTACTCAGAAAAGCTTCTTTGGAGAATTGATTTTGGCTTCAGAATCAATTCTAGA ATGATTTCCAAATATGCACTTTTTCATATATAATGTCATTTGGACTACTGGCATTATATCATATGCAATTAAGCATAATG CAAAACTCAGGCTTTGCTGAAGTAATTCCATTTAGCAATGATTTCCTTTATGATCTTTTGAGCAGTGAGTAAGTCTGCAT GGATGACTGATGAAGAATTTGCAAGAGAGATGCTTGCTGGTGTAAATCCTTGTGTTATTCGTGGTCTTCAAGTAAGTTCA AGTCTCTATTACTAAGTGAGTTTGGTTCCACGGTTGGGAGCTATAGGATCAATCTTTATTGATCAGAATTGCTTTTAGGT GATTATATATATGTATGGCATTAGACTTAGAGAATTGACTCTAGTCCCAAAATCAACTGTCCTGACTCCTGAGAAAGCAG AGAGTAGTTTCTGTAGTGAACATAATCAAATGTGAAATTTCATAAATGGATTTCACAACATATAATATAGAAATCACTTT ACTCATAAACATATCTAGATATAAATCACTTCACTTTTACCATAATCAATTTTACCAAAACTAAATTTATCTAAAATCAC TTCTGACAATGCTGATACAGACATTCACTAAACAGTTTGAAACATCGAATTCAATGTCCATGTTAAATTGGTTTATCAAT AATAACCACCATAATGAACTGAATATTATATATCATGGTTGATCATATTTTTCCACATGATATTCTTTGATGAATGGTAG GAATTTCCTCCGAAAAGTAATCTGGATCCTACAATCTATGGTGATCACACCAGTAAGATAACCCCAGAAGTCCTGGAGCT AGATGGGTGCACACTGGATGAGGTAAAAATGTTTGTCTTATAATTCCACTGTAAAGTAAAAGTTAACTTATATTCTTTTC TGGTGATACAAAGTGATTAAAGTTAATTCTGTGTAACAGGCACTTGCTAGTGGGAGGCTATTTATACTAGATTACCATGA CATATTCATGCCATATCTTAGAAAGATAAACCAGACTAATGCCAAGGCTTATGCCACCAGAACTATTCTTTTCTTGAAAG AAAATGGAACTTTGAAGCCACTGGCCATAGAATTGAGTTTACCTCATCCTGATGGAGACAAATCAGGCGCTGTTAGTCAA GTCATTTTACCTGCAAAAGAAGGTGTTGAAAGTACTATTTGGCTACTAGCTAAAGCTTATGTGGTTGTGAATGATTCCTG CTATCATCAACTCATGAGCCATTGGTATAAAGTTTATCCTTGCAATCTAACATGAACTCAATCTCTCTCTACATGTGTGT GCGTGAAGGATTTAGATTTCAAACAATTCAAGTTTAGAGATCAGACTTTTGAATCATAGAAGTCCAAATTTGATAGTACT GTTATGGAATCCTAACTTCTATGAATTCAGGAAAATCTGACTGCAAGAAAGCCGGATCCGTGCGTGAAGTGTGTTAAGTC TCAATTTTTTTCTATGTGTTTGTAGGTTAAACACGCATGCTGTGATCGAGCCGTTCGTTATAGCAACACACCGGCAGCTT AGCGCGCTTCACCCGATTTATAAACTTCTAACTCCTCATTATCGCGACACCATGAACATCAATGCACTTGCTAGGAATGC TTTGATTAATGCTGATGGCATAATAGAGAGAACTTTTTTGCCCAACAAGTATTCTGTGGAAATGTCTTCAGCAGTTTATA AGAATTGGGTTTTCCCTGATCAAGCACTACCTGCTGATCTTATCAAAAGGTAGTTAATTTCTATAAACATATACCTCTAA AACATGAGACTTGAAAAGAAAAACTAAGGTTTGAAATATACTGTTTGGGTTTTGCTATGTTACAGAAGGAAAATACTAAA TATTACTATACGAAACAGGAGAAGGGGTAGCTATCATTCACTACCTCCCATGATTTCTGTCAAATAACACAGTTAACTTC ACTACATCAGCATTTCTTGTAATTCTTGCAAATCTTCTTCGTAACATATAACATTTCTGGTTACAGAAACAGGAATTGGT CCAAGTATGGAACTCCAAAGCATAATCATGCTTTAAATTTAGATGGTGTTAGTAATTAACATGTGTTTACTTTGCTTGAT TCAGAAATGTTGCTGTTAAAGATTCATCTGCTCCACATGGACTTCGACTTCTGATAGAGGACTACCCGTATGCTGTTGAT GGACTAGAGATATGGGCTGCTATCAAAACATGGGTCAAAGATTATGTCTCATTGTACTATGCAACAGACAATGATGTCAA AAATGACTCTGAACTCCAACATTGGTGGAAAGAAGCTGTGGAGGTAGGTCATGGTGATTTGAAAGACAAGCCATGGTGGC CTAAGTTGCAAACACTTGAAGAGCTCATTGAAACTTGCTCTATCATCATATGGACTGCATCGGCGCTCCACGCAGCAGTT AATTTTGGGCAATATCCTTATGGAGGTTTTATCCTTAACCGTCCGACTATGAGTAGAAGATTGCTTCCTGAGAAAGGAAC TGCAGAATATGATGAAATGGTGAAGAGTCATCAAAAGGCTTATTTGAGAACAATCACACCAAAGCTTCAGGCTCTCATTG ACCTTTCAGTGATAGAAATCTTGTCCAGGCATGCTTCTGATGAGGTCTACCTTGGAGAAAGGGAGAATCCACATTGGACC TCTGATGAAAGAGCTTTACAAGAATTTGAGAAGTTTGGAAGTAAGCTGGCAGAAATTGAGGCAAAACTTGCTAAGAAGAA CAGTGATGCGAATCTGAGGAATCGAATCGGGCCGGTTGAATTGCCATACACTTTGCTTCATCACAAAAGTGAAGAAGGGT TAACTTTTAGAGGAATTCCTAACAGCATCTCTATCTAAAGATAGAACCTTGTGGTTTCTTTTACATCCTATTGCAGTATA CCATCCAATAAAGAGATGCAAGACTAGTAGTCAAATAATCTGCATCTTATCTATGTTTTTGTATATTTAATAAATGCTGT AATTTGAAACCTCCAGCTCCATCTGGTTTGCAATAATAAGAGCAATATTAGTTTGTGATTTGCTCCTGTTATGTTCATAA GCTACACTTTATAGCTTCTCCTTAAAAGGGAATATGGAGTCTCCAACTACAGGTGCCAAACACGCTAATAACCACCCATC AATTAAGTGCGAAAGCAAGAGTATCCATT 

CDS sequence (LotjaGi3g1v0028600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTTTTCAGGGGTGAGCGGAATCCTCAACAGAGGCCAAAAGCTCAGAGGGACAGTGGTGTTGATGCGCAAAAATGTGTT GGACTTCAACAACATTGCTGATATCGGCACCGGAAACCTCGGAGGAGTCATTGGCACCGGGCTCAACGTCATCGGTTCAA CCGTTGATGGCCTTACTGCCTTCTTGGGTCATAGCGTCGCCCTCCAGCTGATCAGTGCCACCAAGGCTGATGAGAATGGA AAAGGGAAAGTTGGAAAGGACACATTTTTGGAAGGCATCATTGCCTCGCTACCAACCTTGGGAGCAGGAGAGTCTGCATT CAACATTCACTTTGAATGGGACGATAGCATGGGAATTCCTGGTGCATTTTACATAAAGAACTACATGCAAGTTGAGTTTT TCCTCAAGAGCTTAACTCTTGAAGATGTCCCAAACCATGGAACCATCCGTTTTGTTTGCAACTCTTGGGTTTACAACTCA AAACTTTACAAATCCCCACGCATTTTCTTTTCCAATAAGACATATCTTCCAAGTGAAACACCATCTCCACTAGTGAAGTA CAGAGAGGAAGAGTTGAAGATTTTAAGAGGAGATGGAAAAGGGGAGCGCAAGGAATATGAAAGGATCTATGATTATGATG TCTACAATGATTTGGGTAATCCAGATCACGGCGAAAATCATGCTCGACCGATTCTTGGAGGGTCTAGCACCCATCCATAC CCTCGCAGGGGAAGAACCGGTCGATATCCATCAAGGAAAGATCCAAACTGTGAGAAACCAGGGGAAGTTTATGTTCCAAG AGATGAAAACTTTGGTCACTTGAAGTCCTCAGATTTTCTTACATATGGAATCAAATCTTTAACTCAATTTGTGTTACCAG CTTTCGAATCTGCGTTCGATATGAATTTCACTCCAAATGAGTTTGATAACTTCCAAGATGTGAGAGACCTTTTTGAAGGT GGAATTAAGCTTCCTTTAGATGTAATCAGCACAATTAGCCCCTTACCAGTTATCAAAGAACTCTTCCGTACTGATGGTGA ACAGTGCCTCAAGTTTCCACCACCTCACATCATTCAAGTGAGTAAGTCTGCATGGATGACTGATGAAGAATTTGCAAGAG AGATGCTTGCTGGTGTAAATCCTTGTGTTATTCGTGGTCTTCAAGAATTTCCTCCGAAAAGTAATCTGGATCCTACAATC TATGGTGATCACACCAGTAAGATAACCCCAGAAGTCCTGGAGCTAGATGGGTGCACACTGGATGAGGCACTTGCTAGTGG GAGGCTATTTATACTAGATTACCATGACATATTCATGCCATATCTTAGAAAGATAAACCAGACTAATGCCAAGGCTTATG CCACCAGAACTATTCTTTTCTTGAAAGAAAATGGAACTTTGAAGCCACTGGCCATAGAATTGAGTTTACCTCATCCTGAT GGAGACAAATCAGGCGCTGTTAGTCAAGTCATTTTACCTGCAAAAGAAGGTGTTGAAAGTACTATTTGGCTACTAGCTAA AGCTTATGTGGTTGTGAATGATTCCTGCTATCATCAACTCATGAGCCATTGGTTAAACACGCATGCTGTGATCGAGCCGT TCGTTATAGCAACACACCGGCAGCTTAGCGCGCTTCACCCGATTTATAAACTTCTAACTCCTCATTATCGCGACACCATG AACATCAATGCACTTGCTAGGAATGCTTTGATTAATGCTGATGGCATAATAGAGAGAACTTTTTTGCCCAACAAGTATTC TGTGGAAATGTCTTCAGCAGTTTATAAGAATTGGGTTTTCCCTGATCAAGCACTACCTGCTGATCTTATCAAAAGAAATG TTGCTGTTAAAGATTCATCTGCTCCACATGGACTTCGACTTCTGATAGAGGACTACCCGTATGCTGTTGATGGACTAGAG ATATGGGCTGCTATCAAAACATGGGTCAAAGATTATGTCTCATTGTACTATGCAACAGACAATGATGTCAAAAATGACTC TGAACTCCAACATTGGTGGAAAGAAGCTGTGGAGGTAGGTCATGGTGATTTGAAAGACAAGCCATGGTGGCCTAAGTTGC AAACACTTGAAGAGCTCATTGAAACTTGCTCTATCATCATATGGACTGCATCGGCGCTCCACGCAGCAGTTAATTTTGGG CAATATCCTTATGGAGGTTTTATCCTTAACCGTCCGACTATGAGTAGAAGATTGCTTCCTGAGAAAGGAACTGCAGAATA TGATGAAATGGTGAAGAGTCATCAAAAGGCTTATTTGAGAACAATCACACCAAAGCTTCAGGCTCTCATTGACCTTTCAG TGATAGAAATCTTGTCCAGGCATGCTTCTGATGAGGTCTACCTTGGAGAAAGGGAGAATCCACATTGGACCTCTGATGAA AGAGCTTTACAAGAATTTGAGAAGTTTGGAAGTAAGCTGGCAGAAATTGAGGCAAAACTTGCTAAGAAGAACAGTGATGC GAATCTGAGGAATCGAATCGGGCCGGTTGAATTGCCATACACTTTGCTTCATCACAAAAGTGAAGAAGGGTTAACTTTTA GAGGAATTCCTAACAGCATCTCTATCTAA 

Protein sequence (LotjaGi3g1v0028600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MFSGVSGILNRGQKLRGTVVLMRKNVLDFNNIADIGTGNLGGVIGTGLNVIGSTVDGLTAFLGHSVALQLISATKADENG KGKVGKDTFLEGIIASLPTLGAGESAFNIHFEWDDSMGIPGAFYIKNYMQVEFFLKSLTLEDVPNHGTIRFVCNSWVYNS KLYKSPRIFFSNKTYLPSETPSPLVKYREEELKILRGDGKGERKEYERIYDYDVYNDLGNPDHGENHARPILGGSSTHPY PRRGRTGRYPSRKDPNCEKPGEVYVPRDENFGHLKSSDFLTYGIKSLTQFVLPAFESAFDMNFTPNEFDNFQDVRDLFEG GIKLPLDVISTISPLPVIKELFRTDGEQCLKFPPPHIIQVSKSAWMTDEEFAREMLAGVNPCVIRGLQEFPPKSNLDPTI YGDHTSKITPEVLELDGCTLDEALASGRLFILDYHDIFMPYLRKINQTNAKAYATRTILFLKENGTLKPLAIELSLPHPD GDKSGAVSQVILPAKEGVESTIWLLAKAYVVVNDSCYHQLMSHWLNTHAVIEPFVIATHRQLSALHPIYKLLTPHYRDTM NINALARNALINADGIIERTFLPNKYSVEMSSAVYKNWVFPDQALPADLIKRNVAVKDSSAPHGLRLLIEDYPYAVDGLE IWAAIKTWVKDYVSLYYATDNDVKNDSELQHWWKEAVEVGHGDLKDKPWWPKLQTLEELIETCSIIIWTASALHAAVNFG QYPYGGFILNRPTMSRRLLPEKGTAEYDEMVKSHQKAYLRTITPKLQALIDLSVIEILSRHASDEVYLGERENPHWTSDE RALQEFEKFGSKLAEIEAKLAKKNSDANLRNRIGPVELPYTLLHHKSEEGLTFRGIPNSISI 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 2 862 861 0.0
PANTHER 2 862 861 0.0
Gene3D 5 175 171 3.2E-70
SUPERFAMILY 13 175 163 3.67E-59
SMART 13 172 160 5.7E-66
CDD 14 172 159 7.45007E-53
ProSiteProfiles 46 171 126 22.095
Pfam 79 170 92 1.0E-15
PRINTS 141 159 19 2.9E-98
PRINTS 167 188 22 2.9E-98
ProSiteProfiles 174 862 689 320.181
SUPERFAMILY 176 862 687 5.89E-286
Gene3D 176 274 99 3.3E-41
Pfam 183 844 662 0.0
PRINTS 206 222 17 2.9E-98
MobiDBLite 223 258 36 -
PRINTS 239 258 20 2.9E-98
Gene3D 275 363 89 3.1E-37
PRINTS 305 326 22 2.9E-98
PRINTS 350 366 17 2.9E-98
Gene3D 364 495 132 7.3E-56
PRINTS 389 408 20 2.9E-98
PRINTS 453 477 25 2.9E-98
Gene3D 496 861 366 1.2E-167
PRINTS 500 517 18 7.4E-25
PRINTS 518 535 18 7.4E-25
ProSitePatterns 518 532 15 -
PRINTS 538 558 21 7.4E-25
ProSitePatterns 545 555 11 -
PRINTS 775 789 15 2.9E-98

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Molecular function Oxidoreductase activity Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
Molecular function Oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from one donor, and two oxygen atoms is incorporated into a donor.
Molecular function Metal ion binding Interacting selectively and non-covalently with any metal ion.
Biological process Oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0028600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…