Transcript — View — Lotus Base

Overview

Field	Value
Gene ID	LotjaGi3g1v0034200
Transcript ID	LotjaGi3g1v0034200.1
Lotus japonicus genome version	Gifu v1.2
Description	DNA-3-methyladenine glycosylase, putative; TAIR: AT3G12710.1 DNA glycosylase superfamily protein; Swiss-Prot: sp\|Q7VG78\|GUAA_HELHP Probable GMP synthase [glutamine]-hydrolyzing]; TrEMBL-Plants: tr\|V7AJL3\|V7AJL3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0034200
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr3:3640392..3643672) extracted from Lotus japonicus Gifu genome v1.2.

GAGTGTTTATAAGTATCTGTTTAGATGTCTAAATAATAAAGTAATGCCCCTCACTAGAGGTTGTATGGCAGATTCCAACC TCCCCATGTTACAAGTTCCCCCTTTACCTGTCCCCACCATCCACAAATGTTATAAAAACCCACTTCCCTCCATTCCCTCT CCTTCAATTACTCATCAAATCCCTCATTACTTCCTTATCCTCTGATCATTGTTTCCTTATAATCACAGCTCCTAACCCAT TAGTCCTCTCTTTCTCATCAACAAAATACACTTCCCAAATTATAAGCACACAAAACAATCAGGCTACAAAATGTGCAGCA CCAAGGCCAAAGTAACTGTAGGCCTAGAAGCCACAACCACAATTCCTTGGGCTAGAATCAATGGCAGGCCTGTCCTTCAA CCAACTTGTAATAGAGTTCCTAACCTTGTTGAGGGGAGAAATTCAATCAAGAAAGTGCCACCAAAGTCACTTTCTCCACC ATCACTTCCACTTCCAACCAAGACTTCATCTACACCCCCAATTTCTCCTAAATCAAAGTCCCCAAGGCCTTCAGCAGTAA AGAGAGGCAATGAGAGTAATGTGCTGAACTCAAGTTCTGAAAAGATTGCAACCCCAAAAAATTCCACAAGAACCCCAACT CTTGAGAGGAAGAAGTCCAAGAGTTTTAAGGATACTGCCATTTCTGCTTCTGCTGAGGCATCATTGAGTTACTCTTCCAA TTTGATCACTGATGCCCCAGGGAGCATAGCTGCAGTGAGGAGAGAACACATGGCACTGCAGCATGCACAGAGAAAAATGA AGATTTCTCATTATGGAAGATCAAAGTCTGCAAATTTTGAAAGAGTTGTTCCTCTTGATTCTTCAATCAATCTCACATCA AAGACAATTGAGGAGGAGAAGAGATGCAGCTTCATCACTGCCAATTCAGGTAATTGCAAATTGGCTTTGACACACACTTT TTATAATTTGTGCTGGGTGTTTTATCTGAAATTCATATTGTGCTAATTTCAATGTCTCTTTTTATGAATAGATCCCATTT ATGTTGCTTATCATGATGAACAATGGGGAGTTCCAGTCCATGATGACAAGTAAGTCCCCACTTCTCTCTCTTATCACACG TAATCATAATTTAGACCTGGATATGACTCCTTAAAAGTGAGAGACTCACTATAGAGAGTAAAGTAAGTCACTGAAGCCGT TGATTGAAAAATTAACAGTTGTCATTCAAAGAACACCATGATGTACTGTACAAGTATGCGATCACAATCACAACTGTAGA ATTTTCAATCGCAACTGCAATAACTTACTTTACTCTCGAGTTCCTGGAGACAAATCCATTCACACCAAACATAAACATGA AGGGAAGGACAAATGGTGTTGATTGTTGCTAACAAAAATGCTATTTCATATGCAGGATGTTGTTTGAACTTCTTGTTCTA AGCGGGGCACAGGTTGGATCTGATTGGACTTCAATCTTGAAGAAACGCCAAGATTTCAGGTTGGATTCTAATATAAAAAG TAGTGTCTAAATGCATGATTTTATATGAACTCAAATTAAAATGTACTTTTTGTGGGGTTTTCCCTTGAATGAATGAACTA ATGAATTTAAATTATCTACAGGACTGCGTTTTCAGAATTTGATGCAGCAACTGTAGCAAATTTCACAGATAAGCAAATGG TGTCTATTAGTTTGGAATATGGCATTGATATAAGCAGAGTTAGAGGAGTTGTTGATAATGCTAACCAAATTTTAGAGGTA TAACAACAATTTCAGCCTCAACAACTGTGCCCTTTTCATTTCTATTTTTTGCTCTGTGTCTCTTCTTTACACATTATGCC TCCCAGAACACTAGTTTACCAATTATGAGAATATTCTATAGAAAAAGATCATATTAATTAGTTAGTTAGAGTACCAATGA AGAAAAGTACAATAATGTCTTATTTTTCAACTACATTTTATATTATTTTCTTAATTCGCCTATCTACAAGAAAGTTTGCA TATAAACAAGTTCCAAAAAGGATGGAAATCTCAATGCCTGACATATCTGAACTGATTGATCTCTATGTTAAATTTCAAAC CATATCAACCTGGTCAAAATTTTAGTCACTTCTATTTTACTCTAGTTAAATATTTTCTAATAAAATCTTTGTGAATTGGG CTATCACAGATTATCAAGAACTTTGGCTCATTTGACAAATACATATGGGGTTTTGTGAATCACAAACCAATCTCCACTCA ATACAAGTTCAGCCACAAGATCCCAGTCAAGACATCAAAATCAGAGAGCATAAGCAAAGACATGATCAGAAGGGGGTTTA GGTTTGTAGGCCCAACAGTGCTTCATTCATTTATGCAGGCAGCTGGACTCACCAATGACCATTTAATTACATGCCACAGG CACTCCCAATGCTCCTTATTGGCATGATCTCACCGCCATTAATTTTAACCAAGGAAGAACAAATTGACCAAGTAACAAAA GTTATGCAATGTAGGGTGAAGATGAAGAGCATAGATTATGTGTAATATGCTAACTATAGTTCACTTTCAGTTAATCCTTT ATGTATAATATTAGATTAGATAGGAGAAAAAAAAAGGTTTTCTATTTGTGTGACATGAGTGACAGTTTGAGTTTGGTTTG CATAGACAATTGAGGGGAAAATGATTATTAGAGAGAAGAAAAAAGTTTAGGATTCTAATTGATTCTGAAGTGGAATCAAT TATTTGAAGAAGCTTATATGAATTGATTTTGAGAAAATAGAAGCTGATCCAAACATGGTTGTGAAGTGGTGGGAGGCTAT GGGAGGGGGCAGTGACCATGTGCATGTGTGCAAGTGTGAGGCAAGGGCATGTGAGGTGTTCAGTTTGCTTTACATCGCAT TATTATTTGATTCCATGTAACAGGCTGTGTGTGTGGGATACTTGAAAAGGGGAGTGTAGGACCATGCACCCTCCTTTTCA TTCTGTTGCTTTGTTTATGGGATTGTTATCTTTCCTGTATTCTCTAACTTTTTGGTTATGGGGAATATTTGGGGTTGGTG TCAAGTTCTTTGAGTGGTTTTCAATGCATCTGCCATGTGCTCCTGTACTACTTGTGATTAATACATGCATTCAAAATGTT AACAAGATAAGTAACTTTATTGCTTCATAATAGGGACAGATCTCTTCACACATTACATTGGGCAAGTCAAGTACGCTAAC AAGAGTATGTTAGACACACGAGAATTTTATCTAAAACATTAAAGCATTGAGTTTGTGAATGTTATCTTTTATCATCAACT A

Download Genomic Sequence

CDS sequence (LotjaGi3g1v0034200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTGCAGCACCAAGGCCAAAGTAACTGTAGGCCTAGAAGCCACAACCACAATTCCTTGGGCTAGAATCAATGGCAGGCC TGTCCTTCAACCAACTTGTAATAGAGTTCCTAACCTTGTTGAGGGGAGAAATTCAATCAAGAAAGTGCCACCAAAGTCAC TTTCTCCACCATCACTTCCACTTCCAACCAAGACTTCATCTACACCCCCAATTTCTCCTAAATCAAAGTCCCCAAGGCCT TCAGCAGTAAAGAGAGGCAATGAGAGTAATGTGCTGAACTCAAGTTCTGAAAAGATTGCAACCCCAAAAAATTCCACAAG AACCCCAACTCTTGAGAGGAAGAAGTCCAAGAGTTTTAAGGATACTGCCATTTCTGCTTCTGCTGAGGCATCATTGAGTT ACTCTTCCAATTTGATCACTGATGCCCCAGGGAGCATAGCTGCAGTGAGGAGAGAACACATGGCACTGCAGCATGCACAG AGAAAAATGAAGATTTCTCATTATGGAAGATCAAAGTCTGCAAATTTTGAAAGAGTTGTTCCTCTTGATTCTTCAATCAA TCTCACATCAAAGACAATTGAGGAGGAGAAGAGATGCAGCTTCATCACTGCCAATTCAGATCCCATTTATGTTGCTTATC ATGATGAACAATGGGGAGTTCCAGTCCATGATGACAAGATGTTGTTTGAACTTCTTGTTCTAAGCGGGGCACAGGTTGGA TCTGATTGGACTTCAATCTTGAAGAAACGCCAAGATTTCAGGACTGCGTTTTCAGAATTTGATGCAGCAACTGTAGCAAA TTTCACAGATAAGCAAATGGTGTCTATTAGTTTGGAATATGGCATTGATATAAGCAGAGTTAGAGGAGTTGTTGATAATG CTAACCAAATTTTAGAGATTATCAAGAACTTTGGCTCATTTGACAAATACATATGGGGTTTTGTGAATCACAAACCAATC TCCACTCAATACAAGTTCAGCCACAAGATCCCAGTCAAGACATCAAAATCAGAGAGCATAAGCAAAGACATGATCAGAAG GGGGTTTAGGTTTGTAGGCCCAACAGTGCTTCATTCATTTATGCAGGCAGCTGGACTCACCAATGACCATTTAATTACAT GCCACAGGCACTCCCAATGCTCCTTATTGGCATGA

Download CDS Sequence

Protein sequence (LotjaGi3g1v0034200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MCSTKAKVTVGLEATTTIPWARINGRPVLQPTCNRVPNLVEGRNSIKKVPPKSLSPPSLPLPTKTSSTPPISPKSKSPRP SAVKRGNESNVLNSSSEKIATPKNSTRTPTLERKKSKSFKDTAISASAEASLSYSSNLITDAPGSIAAVRREHMALQHAQ RKMKISHYGRSKSANFERVVPLDSSINLTSKTIEEEKRCSFITANSDPIYVAYHDEQWGVPVHDDKMLFELLVLSGAQVG SDWTSILKKRQDFRTAFSEFDAATVANFTDKQMVSISLEYGIDISRVRGVVDNANQILEIIKNFGSFDKYIWGFVNHKPI STQYKFSHKIPVKTSKSESISKDMIRRGFRFVGPTVLHSFMQAAGLTNDHLITCHRHSQCSLLA

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Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR31116:SF21 View details on PTHR31116:SF21 Search for proteins/transripts with this domain View external data on PTHR31116:SF21	1	384	384	1.2E-233	–
PANTHER	PTHR31116 View details on PTHR31116 Search for proteins/transripts with this domain View external data on PTHR31116	1	384	384	1.2E-233	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	43	122	80	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	53	67	15	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	82	107	26	-	–
Gene3D	G3DSA:1.10.340.30 View details on G3DSA:1.10.340.30 Search for proteins/transripts with this domain View external data on G3DSA:1.10.340.30	196	381	186	2.1E-65	–
SUPERFAMILY	SSF48150 View details on SSF48150 Search for proteins/transripts with this domain View external data on SSF48150	197	380	184	1.02E-63	IPR011257 Show description in modal box View details on IPR011257 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF03352 View details on PF03352 Search for proteins/transripts with this domain View external data on PF03352	204	376	173	2.5E-61	IPR005019 Show description in modal box View details on IPR005019 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003824 View details of GO:0003824 AmiGO InterPro QuickGO	Molecular function	Catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.	Subterm of View details of GO:0003674
GO:0006281 View details of GO:0006281 AmiGO InterPro QuickGO	Biological process	DNA repair	The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.	Subterm of View details of GO:0006259 View details of GO:0006974
GO:0006284 View details of GO:0006284 AmiGO InterPro QuickGO	Biological process	Base-excision repair	In base excision repair, an altered base is removed by a DNA glycosylase enzyme, followed by excision of the resulting sugar phosphate. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase.	Subterm of View details of GO:0006281
GO:0008725 View details of GO:0008725 AmiGO InterPro QuickGO	Molecular function	DNA-3-methyladenine glycosylase activity	Catalysis of the reaction: DNA containing 3-methyladenine + H2O = DNA with abasic site + 3-methyladenine. This reaction is the hydrolysis of DNA by cleavage of the N-C1' glycosidic bond between the damaged DNA 3-methyladenine and the deoxyribose sugar to remove the 3-methyladenine, leaving an abasic site.	Subterm of View details of GO:0043733

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0034200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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LotjaGi3g1v0034200.1