Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi3g1v0036900 |
Transcript ID | LotjaGi3g1v0036900.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | tRNA (Adenine-N(1)-)-methyltransferase catalytic subunit TRMT61A; TAIR: AT5G14600.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Swiss-Prot: sp|Q6AY46|TRM61_RAT tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A; TrEMBL-Plants: tr|V7AKG9|V7AKG9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0036900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:4002972..4006394) extracted from Lotus japonicus Gifu genome v1.2.
GAAACGAATTTTGTCTCAAACTCTCCTCTACTCTCCTCTCAGACCTGCTCTCCCCTCACCGCCACTCTCTTCCGCCGCCG ACCGTGTCCGTGAGGTTGGACTCCGTTACCATTGTTGCTTGCAGAATATCATTCATATTCTTCTTTCCACTAATATCATT CAAGGTTAGTGCTTATTGAATAGGAAAAATATTTGTACAAAGAATCAGTAAGCTGTGTCCTTTTTTCACTATTAATTATT CAGTTCACTCCCAATTTGCTTTAAGTTTCACTGAAAAACAATGTTTAGGTTTTCTTCTTCCTTTGTAACTCCACTGCTTG TATGCTCTAAATATCTGTTCTAGTTTTGGGTGCTTACTTTAATTTTTACTAGAACAAAGTTTGGAATGTGTGAGCTTGTA TTGGGCAGGGTTGTTAATGGCGGATAGCGTAGTGTAGCGGAAAGCTCAAAAAACGCTATTTCGAGCGCTACTGCGGCAAA TAGCGCAAATAGTGGAATAGCGTGAACCCCCGGGCGATACGCTATAGGCTATAGCGCGCTATTAACAAGCCTGGGGTTAT ATTCTTTATTTTACATTTTCACTTTTTTTGTGTGAATTTTGATGGCTTTATTTCCAGAACACACTGCATGTGTAAATTGT AATAGCGTAGTCAAATAGCGGTTATAGCGGCGCTATAGCTATAGGTAGCACTCTGAGGGTTCACCGCTAATACGCTATTG TCTGCTATGAGGGATTGAAATAGCGGATTTTTGGCTTTCTGTTATTTTCCGCAATTCGTGATTAACAACCCTGATGTGTA TAATGCATTTTTCTTTGTTTTTTGGGTGGCAGATATTTGTTCTAATTAAGTGGACTGAAATATTTGAAGATGTTGGCCAG CGAATCTGCAAAAAGGATATCGTTTAATCGATCTATTAGCAATGGCGATTTGGTTATTGTTTATGAAAGGCATGACAGCA TGAAGGCTGTAACAGTGACTGAAGGATCAGTTCTGCAGAATCGTTTCGGTGTTTTCAAACATTCAGATTGGATAGGGAAG TCATTTGGGTCCAAAGTGTTCAGTAATAAGGGCGGCTTTGTGTACTTGTTGGCTCCCACACCGGAACTATGGACTCTAGT GTTAAGCCACAGGACTCAGATTCTATACATTGCAGATATTAGCTTTGTTGTCATGTACTTGGAGATTGTTCCTGGCTGTT TGGTTCTTGAATCTGGAACTGGAAGTGGATCTTTAACTACGTCACTTGCAAGGGCAGTAGCTCCTACAGGACATGTCTAT ACGTTTGATTTCCACGAGCAAAGGGCTGGATCAGCTAGGTAAATGCAAAGGACTATTGAGATTCTCACCTTAAGTACTGT CTGTCCTTAACTGATATTTAATGCATGTTTTTTAGCTTTCTCAAATGCCTATGTTTTATTTTCATATCTTTGCATAGTGT TTTGTTGTTGTCCTATTGATGAAATTTCAAGTAATAGAGACCTGAAAATATAATGCTCGATAAAAGGGGATTTTATTGAA TTCAAAGTCTTAGAATTTGGGTTAGGTCTATCGGGTTTGGCCTAATTCTGTCTCAAAAGCGATAAACGGGGTCTAGGATA GGCTCTGATACCATCTTAGAATTCTGGTTAGGCCTAAGCTAGCTTTTCGCGCAGAGTTAGGACTAACCTTAATTCTAAGC CAAAGGAATCAAAGAACGATTATGATGGTAGAAGAAAAGCAAACCAGACCCTAAGAGATCCTCAAAGAAGTATTCTCAGT CCAGCAAATATGCCTAACAGACTTGATCATAACAACTGCCTCACCTCATTTCCCCACTCCTTGTGCACGTGAATCCTTAC TCCAATAGTCCAATGCGATCCAGCTGCAACCTCACATGGTCACACCTTCCATCAGCCCCCTTAAGGCTCTCCTCTTCTTG ACTAACTAATCCACATCAGCCACAGTCAACGTTGGCAAGTTTAGCTTCCTTCTGAAATATACTTTCCAGATCTTCGAGCA GGGTTCAAATCAATAGCCTTTTCATCATTTGGCACATGTTCTGGAATTGGATCTCTATCGGTAAGCGATAGATTTGGTGA ACTAATACTTCATTATTCAGAATGCCAACGCTTAGGTACAAGTTTATTTGTTTGAACTCCGCTTTTCATGGGCTAAATCA TTCAAGACGCAACAAAATATGATTTACAAACCTTATCAGAATCGCAGTGTCTTTTTGTGTTTGTCTGTCTGTGTGTTTGA GAGGATGCACTCAAGATGCTCAATATGAAGTTGATTTGTGTTCCTGCTATTTGTTTGTCATGAGTTACTGAATAATTCCT TTCATATTGTGAACTTCTTTACTTCCATGTAGGGATGATTTTGAGAGGACTGGTCTAAGCAAGTTAGTCACTGTGGGAGT GAGGGACATTCAGGGTGAGGGATTTCCTGAAGAATTTGCTGGCTCGGTGGATGCAGTTTTTTTGGATCTACCCCAGCCTT GGCTTGCTATTCCTTCAGCTGCAAAAATGTTAAAACAAGACGCCACGTTGTGCTCATTCTCCCCATGTATCGAACAAGTA CAACGATCATGTGAAACACTTCGAACCAGCTTCACCGGTACTTTACTGTTTTCTTCTTTGTCTCCATCCATGTTTTCCTT TTCAGACTCGAGCTTGTTGAATGGCTTTGTTTCTTATATTTTGTTGCTCTTTCTCTCATGATATTAATGCAATTAATGGT AATTTTATAATCACTGATGAATTTCATTTGTAACTGTGCTTTTCTAAAAGATATAAGGACTTTTGAGGTACTTCTACGCA CATATGAAGTTCGAGAAACGAAGATGGAAAGATTACAGGAGAATGGGAATAGCTCTAATGTTTCACTTCCTTGCAAGAGG AGGCAGTGTTCAGATGGAGGTAATGTGCTCAGCAGTTCTATTTCTTCTGTTACAGCTAGACCATGCGGTGAAGCTAGAGG TCACACAGGCTATTTGACATTTGCAAGACTTAAATGTCTATCATGAAGAGTGTTATCATGTCCCCTTGTTTTTCTTGTAG GAGAGAAAATACTTTGTAATTTTATGATCTGTTCAATTTTGAACCTTGTGTAACAGTTTTTTTTTTTCTTTTCGTCTTCA ACCAGAAGCATTCAAAGAAAATTTTGGCTATAAATCTGCTTTTCCTATTAGCTTTGATGTTTTTTATTTTATCCCTTTCT TCAAACTGTACAAGTAGCAGAATCGAATTCATGTTATTCATCTCCTTAGCAGTGTTGTATGTTTGGACTTTGGCTATAAA AAAGAACTTTGCCTTAGAATTGAGTTGTTAACTACTTTTTGCTTCTGTGTCCACTGGACTTTGAAAATAAGGTTTCGTTC ATGTCCTTGTGGGGCATAGTTCCTAGATTCTATCATCTCCCACATAATAGGAGACAAGTAGGG
CDS sequence (LotjaGi3g1v0036900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGGCCAGCGAATCTGCAAAAAGGATATCGTTTAATCGATCTATTAGCAATGGCGATTTGGTTATTGTTTATGAAAG GCATGACAGCATGAAGGCTGTAACAGTGACTGAAGGATCAGTTCTGCAGAATCGTTTCGGTGTTTTCAAACATTCAGATT GGATAGGGAAGTCATTTGGGTCCAAAGTGTTCAGTAATAAGGGCGGCTTTGTGTACTTGTTGGCTCCCACACCGGAACTA TGGACTCTAGTGTTAAGCCACAGGACTCAGATTCTATACATTGCAGATATTAGCTTTGTTGTCATGTACTTGGAGATTGT TCCTGGCTGTTTGGTTCTTGAATCTGGAACTGGAAGTGGATCTTTAACTACGTCACTTGCAAGGGCAGTAGCTCCTACAG GACATGTCTATACGTTTGATTTCCACGAGCAAAGGGCTGGATCAGCTAGGGATGATTTTGAGAGGACTGGTCTAAGCAAG TTAGTCACTGTGGGAGTGAGGGACATTCAGGGTGAGGGATTTCCTGAAGAATTTGCTGGCTCGGTGGATGCAGTTTTTTT GGATCTACCCCAGCCTTGGCTTGCTATTCCTTCAGCTGCAAAAATGTTAAAACAAGACGCCACGTTGTGCTCATTCTCCC CATGTATCGAACAAGTACAACGATCATGTGAAACACTTCGAACCAGCTTCACCGATATAAGGACTTTTGAGGTACTTCTA CGCACATATGAAGTTCGAGAAACGAAGATGGAAAGATTACAGGAGAATGGGAATAGCTCTAATGTTTCACTTCCTTGCAA GAGGAGGCAGTGTTCAGATGGAGGTAATGTGCTCAGCAGTTCTATTTCTTCTGTTACAGCTAGACCATGCGGTGAAGCTA GAGGTCACACAGGCTATTTGACATTTGCAAGACTTAAATGTCTATCATGA
Protein sequence (LotjaGi3g1v0036900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLASESAKRISFNRSISNGDLVIVYERHDSMKAVTVTEGSVLQNRFGVFKHSDWIGKSFGSKVFSNKGGFVYLLAPTPEL WTLVLSHRTQILYIADISFVVMYLEIVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAGSARDDFERTGLSK LVTVGVRDIQGEGFPEEFAGSVDAVFLDLPQPWLAIPSAAKMLKQDATLCSFSPCIEQVQRSCETLRTSFTDIRTFEVLL RTYEVRETKMERLQENGNSSNVSLPCKRRQCSDGGNVLSSSISSVTARPCGEARGHTGYLTFARLKCLS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 4 | 305 | 302 | 3.9E-129 | – | |
PANTHER | 4 | 305 | 302 | 3.9E-129 | ||
Gene3D | 6 | 77 | 72 | 1.4E-28 | – | |
PIRSF | 10 | 308 | 299 | 4.5E-100 | ||
SUPERFAMILY | 16 | 305 | 290 | 2.46E-77 | ||
ProSiteProfiles | 19 | 306 | 288 | 101.034 | ||
Pfam | 69 | 304 | 236 | 1.9E-98 | ||
Gene3D | 78 | 307 | 230 | 2.8E-80 | – | |
CDD | 112 | 205 | 94 | 2.90651E-4 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | TRNA (adenine-N1-)-methyltransferase activity | Catalysis of the reaction: S-adenosyl-L-methionine + tRNA = S-adenosyl-L-homocysteine + tRNA containing N1-methyladenine. | ||
Biological process | TRNA methylation | The posttranscriptional addition of methyl groups to specific residues in a tRNA molecule. | ||
Cellular component | TRNA (m1A) methyltransferase complex | A protein complex involved in the catalysis of the formation of the modified nucleotide 1-methyladenosine (m1A) in tRNA. In yeast, it is a heterotetramer of two subunits, Gcd10p and Gcd14p, while in bacteria and archaea it is a homotetramer. |
Expression pattern of LotjaGi3g1v0036900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…