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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0049200 |
| Transcript ID | LotjaGi3g1v0049200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT4G21705.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q84JR3|PP334_ARATH Pentatricopeptide repeat-containing protein At4g21705, mitochondrial; TrEMBL-Plants: tr|A0A1J7GFG4|A0A1J7GFG4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0049200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:5156179..5159352) extracted from Lotus japonicus Gifu genome v1.2.
GCCCAACCCAGCCCAACAAGTACCAGCGTTAACATTTCGCGCGGCTGCTCTCAGTTTCTGACTGAGCGAGTTTCACAACC TCGCCACCCTCCTTCGACTGCCGTTTGCTAATGGCGTCGACACCGTTTTCTGCGATCCTCCGCCACAAGTTCCAGAACCT CACCGCAAACTTTCAGCTTCTGAGACTATACCGCTCCGCCTCCACCACCGTCACGAAGCGGAGAGACCTCTACTCCAGAA TCAGCCCTCTCGGAGACCCTTCTGTCAGCGTTGTTCCCGTTCTCGAAAAATGGGTCCAACAGGGTAACGCTATCAAGGAG AAGCAGCTCCAGCTCATCGTCAAAACTCTCCGCACCCGGAAACGCTTCACTCATGCACTTCAGGTTAGCACAACATTGAA GGGTTTCAATTCCACATATTTATTTATACTATTATTTATTTACATAAATCATCATTAATAGTAACAACAATTAAGTGAAC TAGTTTTTTACAAACTGAAATCAAATGTACTTTGAAAGTGGGAACATCCTCGACGAGTGGTAAGAGTTACGGGACATAAG GGTTGGGGGAATGAATGGTGGTGAACGGGTCAGGGTTCAAACTCTGGTGAAGGAACTAATTTACTAACATTACTAGCAAC TAATCCAGTAGGGATTTGTTTTTAAAAGACAAACAGAGACTTAATGAGACATTTGATCGGTTGCTTCTGTATCTAAAATC CAGTAGGGAGAAGATATAATTGAACTGTAGGTATTAACTTGGGAGCTTTGGACATGATTCAAGGAATGTGCATTTGCTGA TTTGGACTGTTGGACCAGTGAAATGAGTTCTTCATATTGGTCACGTGTAAATGAGAATCCTGATTGATCAATCTTTGGTA GTCTCAGAAATGACACCTTCTTGTGGTGTATTTGAGGTGATGTTACCATATGTAGAGGTGATGTTAGGCTTTGTGTTCCA CTTATAACTATATGGAAATCCATGTTTATAGAAACATGTCTCAACTGTGTGATTAGTCCTATTGGAATAGATGCATACAT TTTGCCGCCACTACTGCCACCATTATTTCTCCCAAATCTTCCACCAACAAAGCTCCTGCCTCCACCTCTTTGGAAATTCA TGGTAATGATTCGCCATTGCAGCAGGAAATTGAAAGAAGGAAAAATTGCAGAAGGAAGAATTGAAGAGAGTGAAGTTGGT GCGGAAGGTGTAATGGTCCCAGGCTTATTGCTCTTATACCATCATAGGGAAGCACATACCAGAGAAGAAAGGAAGATAAA AGAGAGAGCTCTGTGAAGAACTATGTGAATTCATTGATCAGAATTGTAAAAATGAATGTTACAGTTCAAAAACTCTGATA GCAAGAGTTTATATACTAACTGCCAAAACTAACTGAATGAAAACCACATGCTAACTAAATGCTTGTTAAATTACATTTAC ATTAATGAAATAACAAACTAACTAACCAGCTAGTTATAACTGAATAACTATTTGTAATAGATGGTGGATTTTCTTAGACC AGAAAAATATTCATTCTATTGTTAAGTAGAAGTGATATGTGACGAAATGACAAGAAAGATTCAAAGAAATAAAACTTGAA ATTCTATCTTTTGTTTCTTTAAATTTATTCACTTGTTCCTGGTTATGCAGTAATTACTGAGATATCTTGAATCTTTGATG ATATGTTCAGGTTTCTGAGTGGATGAGTAGCAAAGGGCTCTGCCCAATTTCGCCGGGTGACCGAGCCGTGCAGCTAGGTC TTATCGGTAGAGTTCATGGACTGGAGAGTGCAGAGAGCTATTTTCAGAATTTGAGTGATATTGACAAAACTGAAAAAGTC CATGGTGCCCTTTTGAATTGTTACGTGAGAGCAGGATTAGTTGACAAGTCACTCTCCCAGATGCAGAAGATGAAGGAAAT GGGTTATGTTTCTTGTCTCAATTACAACAATATAATGTGCCTCTACGCACAAAGTGACCAACATGAGAAAGTACCTGGGG TTTTAGCAATGATGAAAGAGGACGGTGTTTCTCCTGACATTTTCAGCTACAGGGTTTGCATAAACTCTTATGGCGCCAGA TCTGACCTCGAGAATATGGAGAAACTGTTGGAGGAAATTGAAAGAGAAGGCCACACATGCGTGGATTGGATGACATATTC TACAGTGGCCACCTTCTACATCAGAGCAGGCCTGAAGGAGAAAGCTCTGGCCTGCCTGAAGAAGTGTGAGGACAATTTAG ACAAACGCAGCGCGGTTGCTTACAACCATCTAATTTCACATTATGCAGGTCTTGAGATGAAGAAAGCCATGATGAGATTG TGGAAACTTCAGAAGGCTAACTGTAAGAGGCAACTTAATGGGGAATATATAACCCTGTTGAGTTGGCTGGTGAAGTTAGG GGACCTTGATGAAGCTGAGTATTTACTTGGTGAGTGGGAGTTATCTGGTAACACTTACGATTTCAGGGTGCCAAACATCC TCCTGATCGGATATTCAAAGAAGGGATTGATTGAAAAGGCGGAAACAATGCTCCGAAGCATGGTTGAGAAAGGGAAGACT CCTAATCCTTACAGTTGGTCTATCGTTGCATCTGGGTATGTGGCCAAGGAGAACATGGAGAAGGCATTTCAGTGCCTCAA GGAAGCTTTGGCTGTGCTAGCTGAGAATAAAGGTTGGAGACCAAAACCTAATGTTGTTTCCAGCATATTGAGTTGGGTTA CTGATAACAGAGATATAGAGGAAGTAGAAGATTTTGTAAATTCATTGAAGAAAGTGATGTCAATGAATAGGGACATGTAT CGGTCCTTGATCAAGCTACATGTTAGATGTGGGAAAGAAGTAGATGGGGTTTTAGAGAGCATGAAAGCTGACAATATTGA GCTCGATGAAGAGTTGGAGGAAATTCTTAAGTCGAGATTGCAATAATATTGATTATTTGTTCTCCCTCCATATTTTTGTC TTACTAACATAGCACTATTTGCTTTTTTTTTTACCTATTCTCTTTTTCTGGACTGAAGTTTTCTTTATCTGTTTAAAACC TTCTTTTATCACTGTAGGCGCTTAATGCTTAAATGTAACTCGATGTAATTTACTAAGAATTGAAGAATTGGGTGACATGA TCACGGTGATAAGTTTTTATCACATTTGCATTGAGGAAGTGGCCACTTAAGAAA
CDS sequence (LotjaGi3g1v0049200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGTCGACACCGTTTTCTGCGATCCTCCGCCACAAGTTCCAGAACCTCACCGCAAACTTTCAGCTTCTGAGACTATA CCGCTCCGCCTCCACCACCGTCACGAAGCGGAGAGACCTCTACTCCAGAATCAGCCCTCTCGGAGACCCTTCTGTCAGCG TTGTTCCCGTTCTCGAAAAATGGGTCCAACAGGGTAACGCTATCAAGGAGAAGCAGCTCCAGCTCATCGTCAAAACTCTC CGCACCCGGAAACGCTTCACTCATGCACTTCAGGTTTCTGAGTGGATGAGTAGCAAAGGGCTCTGCCCAATTTCGCCGGG TGACCGAGCCGTGCAGCTAGGTCTTATCGGTAGAGTTCATGGACTGGAGAGTGCAGAGAGCTATTTTCAGAATTTGAGTG ATATTGACAAAACTGAAAAAGTCCATGGTGCCCTTTTGAATTGTTACGTGAGAGCAGGATTAGTTGACAAGTCACTCTCC CAGATGCAGAAGATGAAGGAAATGGGTTATGTTTCTTGTCTCAATTACAACAATATAATGTGCCTCTACGCACAAAGTGA CCAACATGAGAAAGTACCTGGGGTTTTAGCAATGATGAAAGAGGACGGTGTTTCTCCTGACATTTTCAGCTACAGGGTTT GCATAAACTCTTATGGCGCCAGATCTGACCTCGAGAATATGGAGAAACTGTTGGAGGAAATTGAAAGAGAAGGCCACACA TGCGTGGATTGGATGACATATTCTACAGTGGCCACCTTCTACATCAGAGCAGGCCTGAAGGAGAAAGCTCTGGCCTGCCT GAAGAAGTGTGAGGACAATTTAGACAAACGCAGCGCGGTTGCTTACAACCATCTAATTTCACATTATGCAGGTCTTGAGA TGAAGAAAGCCATGATGAGATTGTGGAAACTTCAGAAGGCTAACTGTAAGAGGCAACTTAATGGGGAATATATAACCCTG TTGAGTTGGCTGGTGAAGTTAGGGGACCTTGATGAAGCTGAGTATTTACTTGGTGAGTGGGAGTTATCTGGTAACACTTA CGATTTCAGGGTGCCAAACATCCTCCTGATCGGATATTCAAAGAAGGGATTGATTGAAAAGGCGGAAACAATGCTCCGAA GCATGGTTGAGAAAGGGAAGACTCCTAATCCTTACAGTTGGTCTATCGTTGCATCTGGGTATGTGGCCAAGGAGAACATG GAGAAGGCATTTCAGTGCCTCAAGGAAGCTTTGGCTGTGCTAGCTGAGAATAAAGGTTGGAGACCAAAACCTAATGTTGT TTCCAGCATATTGAGTTGGGTTACTGATAACAGAGATATAGAGGAAGTAGAAGATTTTGTAAATTCATTGAAGAAAGTGA TGTCAATGAATAGGGACATGTATCGGTCCTTGATCAAGCTACATGTTAGATGTGGGAAAGAAGTAGATGGGGTTTTAGAG AGCATGAAAGCTGACAATATTGAGCTCGATGAAGAGTTGGAGGAAATTCTTAAGTCGAGATTGCAATAA
Protein sequence (LotjaGi3g1v0049200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASTPFSAILRHKFQNLTANFQLLRLYRSASTTVTKRRDLYSRISPLGDPSVSVVPVLEKWVQQGNAIKEKQLQLIVKTL RTRKRFTHALQVSEWMSSKGLCPISPGDRAVQLGLIGRVHGLESAESYFQNLSDIDKTEKVHGALLNCYVRAGLVDKSLS QMQKMKEMGYVSCLNYNNIMCLYAQSDQHEKVPGVLAMMKEDGVSPDIFSYRVCINSYGARSDLENMEKLLEEIEREGHT CVDWMTYSTVATFYIRAGLKEKALACLKKCEDNLDKRSAVAYNHLISHYAGLEMKKAMMRLWKLQKANCKRQLNGEYITL LSWLVKLGDLDEAEYLLGEWELSGNTYDFRVPNILLIGYSKKGLIEKAETMLRSMVEKGKTPNPYSWSIVASGYVAKENM EKAFQCLKEALAVLAENKGWRPKPNVVSSILSWVTDNRDIEEVEDFVNSLKKVMSMNRDMYRSLIKLHVRCGKEVDGVLE SMKADNIELDEELEEILKSRLQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 500 | 499 | 5.3E-237 | – | |
| PANTHER | 2 | 500 | 499 | 5.3E-237 | – | |
| Gene3D | 67 | 242 | 176 | 1.6E-17 | ||
| ProSiteProfiles | 69 | 103 | 35 | 5.996 | ||
| ProSiteProfiles | 138 | 172 | 35 | 8.857 | ||
| Pfam | 144 | 169 | 26 | 0.0031 | ||
| Pfam | 171 | 221 | 51 | 1.1E-4 | ||
| TIGRFAM | 176 | 208 | 33 | 2.1E-4 | ||
| ProSiteProfiles | 176 | 206 | 31 | 6.434 | ||
| ProSiteProfiles | 207 | 241 | 35 | 8.254 | ||
| Coils | 217 | 237 | 21 | - | – | |
| SUPERFAMILY | 221 | 411 | 191 | 1.18E-5 | – | |
| Gene3D | 243 | 351 | 109 | 8.1E-8 | ||
| ProSiteProfiles | 243 | 273 | 31 | 6.062 | ||
| ProSiteProfiles | 278 | 308 | 31 | 5.371 | ||
| ProSiteProfiles | 313 | 347 | 35 | 5.656 | ||
| Pfam | 317 | 344 | 28 | 0.14 | ||
| ProSiteProfiles | 348 | 382 | 35 | 9.81 | ||
| Pfam | 353 | 379 | 27 | 1.1E-4 | ||
| TIGRFAM | 353 | 383 | 31 | 1.5E-5 | ||
| Gene3D | 359 | 502 | 144 | 4.6E-16 | ||
| ProSiteProfiles | 383 | 413 | 31 | 6.555 | ||
| Pfam | 385 | 409 | 25 | 0.18 | ||
| Coils | 397 | 417 | 21 | - | – | |
| Coils | 479 | 499 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0049200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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