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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0050900 |
| Transcript ID | LotjaGi3g1v0050900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Vacuolar-sorting receptor-like protein; TAIR: AT3G52850.1 vacuolar sorting receptor homolog 1; Swiss-Prot: sp|P93026|VSR1_ARATH Vacuolar-sorting receptor 1; TrEMBL-Plants: tr|G7LAR4|G7LAR4_MEDTR Vacuolar-sorting receptor-like protein; Found in the gene: LotjaGi3g1v0050900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:5339965..5346285) extracted from Lotus japonicus Gifu genome v1.2.
CCATTGTCCATTTCTTCCGCCTTTTGGTTTTGGTTTTAGATGATTTTCTCTTCTCCAACGCATTAACCACAAAAGCCATT GTTTTTTGCCTTAATTTTCATTTTCCAAATCTGGGTTTTGTTCCTCAGCAGTAATTAGCATTACACTAAGCTAAGCTCTT CATTTATTCCAGACAGTGCTTCATTCAATGCTGTCTGAATTATAGTTTTGTTGCAAACTGAACCAATAAAAACAAGGTTG AGATTGAGATCTTTCGATTTCGATTTCCAAGTAGAAGAGTGGTGTCACATGAAAATGAGGAGGACAAAGCTAAGTATTTT GTGGTGTGTATGGATTTTCCTTTGTGGATCTTGTGTGGCCAGATTTGTAGTGGAGAAAAACAATTTGAAAATCACTTCTC CGAAATCATTGAGAGGCATATATGAATGTGCCATTGGGAATTTTGGAGTTCCAAAGTATGGTGGAACCATGATTGGGACT GTGGTATTCCCAAAGTTGAATCAGAATGGATGCAGCAAATTTGATGGTACAGATGCCTTGAGTTCCAAGCCTGGAGGCTT CCCTGCCTTTGTTCTTGTTGATCGAGGAGGTATCAATTAGTCATTTAAAACTCCTCAGTTTTTTGAATATTTTATGCATT GCCACTTTCTTTTCTTTTATGCACATTATGGCATGACATTATGGGGTAACATTCTCAATGGAACATGCTGCACAAGATTT TGTGAAATTCTAGTACCTTTTTTTCATCACTTATTGTGTGGTGATTGGAGACAGAGACACAATGATTATGTCATTAGTTT GCTAGAAATTTCCCAATGAAAAGGCTCAAATCTGTTAACTTTCTATTTGGTAGATTGCTTCTTCACTTTAAAGGCTTGGA ATGCTCAGAACGGTGGAGCAGCAGCTATTCTTGTTGCAGATGATAGGATAGAGCCCTTGATCACCATGGACACTCCTGAA GAAGGGAATGGTGAAAAAGATGATGATTACATTGAAAAGATTAACATCCCTTCTGCTCTTATCAGCAAAGCACTAGGTGA TAGCATCAAATCGGCTCTCTCTAATGGAGCAATGGTTAACGTAAATCTCGATTGGCGAGAGGCTCTTCCACACCCTGATG AGAGAGTAGAGTACGAGTTTTGGACAAGTAGCAATGATGAGTGTGGACCAAAGTGTGAGAATGAGATCAACTTTGTGAAG AGTTTTAAGGGTGCAGCTCAACTGCTTGAGAAAAAGGGGTTCACTAAGTTCACCCCTCACTACATAACTTGGTATTGCCC AGAAGCATTTATCTTGAGCCAACAGTGCAAGTCTCAGTGCATAAACAATGGGAGGTACTGCTCGCCGGATCCTGAACAAG ATTTCAGTAGAGGGTATGAGGGCAAAGATGTTGTTGTTCAAAATTTACGGCAAGCTTGCTTCTTTAAAGTGGCAAATGAA AGTGGAAAACCTTGGCAATGGTGGGACTATGTGACTGATTTTTCAATTCGTTGCCCGATGAGAGACAATAAGTACACTGA AGAATGCTCGGATCAAGTTATTAAATCACTTGGTAGGTCAGATACTTCATGTCTCTAATTTGCATACACTTTGTAGGAGG CTTGCCTTTTTCTTTGGTGTTTATTTTATAGTGCCTAACAGAACTTCACAAATGTAAGCAGCAAGAAAAATGATTTAATG CTTTTAGTTCATGTTTGAAAATGCTTCTCCAATTGATTCTAAAACCAAAATTTATCTAGGGAGAAGAATCTATGAATAGC TTCTAGGTTTCATAATTTGAGTTTAAAAAAATATGTTGATCCAAACATCCTATAATCCAGGCACAACATAAGGCATGTTT GAAAATATTTCTACAGCTGATTCAACAGTTAGAATCAATTATAGGGAGAAGCGGCTGTGAATAACTTTAGGGTTTCAGAA TTAATTATGAGGAAAAATAAGTTGATTCAAACATACTATAATAATGAAATTATTGTCAAATCTTGAGGAGTTTCACTGTC TTTTTAAATGATAAAGCTTTGATGTATACATGGAACAAGAACAAATTTAAATCTTCCTTGGTAGAAATATCATTACCATG GCTCTCAAACCAAGCATAATAATTCAAATCACACTCATAGCTATACTCTTTTTCATCAACTTCTCATTTGTTATCTATGT TGAGATATGCCTTTTGATTTTTTCCTCGTTTACATGGCAGCTGTTGATTTAAAGAAGATTAAAGACTGTATTGGGGATCC TCAAGCAGATGTTGACAATCCTGTTCTTAAGGCTGAACAGGATGCACAGGTTAGTCTTCCATAAGTAAAAACTATTTATA CTATTCTTTTAGGCATATTCTTTTTCTTAAATTTGGCCATTATGTTGTTTTATGATTTTATTGCATTTTGCTTCTACTTC GGTACAGATTGGAAAAGGCTCTCGTGGTGATGTTACTATATTACCCACTCTTGTTATGAACAACAGACAGTATAGAGGTT TGAGACAAAGCATTTCTAGATATCTTGATTGATAATTAACAATGTTCTTCTGTAAAAGTTTTGCTTTAACCGTTTTTAGG TAAGCTGTCAAAAGCAGCAGTCCTGAAGGCACTCTGTGCAAGTTTCCAAGAGACTACTGAGCCTTCCATTTGTTTAACTC CAGGTCCTAATTTCAATTCCTTTTATTTTTCTTTTCTCCCTACATACCCTGATAACATGGTTCTTAGTCCTGTAATGAGC GGTAAAGGGAAGCTAAAAAGAATGTTGGAAGATATTATTAAAGGCGACCTTAGGGTAAATAATAACTCACAAAACTTAGT TTTTGATCGAGCACAATGGTGTGAGTGATCTATATAGTCGACCTCAGTAATAAGATAAGACTTTTGTTATTGTTGTCCTA AACCTCCTTCCTAAACATCCTATGGAAATTAAATCTTTTCTGCATCTTTAGTTATATTCCTTTTGAAAGCAGCCCTTGGC ATGGTATGTGTTTTGTCCTTCCTTCTTCAGGAAATGATATGATGTACCTTTGATTACTCTTTGCAGACATGGAAACAAAC GAATGTTTGGAAAACAATGGTGGTTGTTGGCAGGACAAATCTGCAAATATTACTGCTTGCAGGGTATTTGATTTACTCAA TTCTGTCACATTTCCATGAAACTTTTATTGGTATTAATCATTTTCCTAATTATAGGACACTTTCCGAGGAAGAGTATGTG AATGCCCTATTGTACAAAATGTGAAATTTGTGGGTGATGGATATACCCACTGTGAAGGTAAACTTAAACTTGAATTTTAG ATGAATTGCTTCATCTCCATTATATAAATTTCAAAATATTTAGTATACTGTAAATGTAAAATATAAAGTCACATTTGCAT GTGAACAGCTTCAGGAGCCTTGAGGTGTGCAATCAACAATGGAGGTTGTTGGAAAGGAGCCAGAGGTGGCAGGGCTTACT CTGCTTGTATTGTAAGTAGTCGGGTCCTTTGCATCCTTTTACATGCTTTTGCACTTATGCTCCTTTTCTTTTTCTTTCCT TTTTCAATGTTAGATATTGATTATTCTCTGTATCCTTGTTTCTTAATTGATAATACAGGATGACCACACAAACGGTTGCA AGTGTCCACCTGGATTCAGGGGTGATGGAGTCCACAACTGTGAAGGTAATCTACCATCCTGAATCTGTTTGAACTATTAT AGAATCGTGTGCATGACAGATACACCAGAACGCATGTTTGGATACATGGTAGAAAACCACGGTGATAGATAGAAGCAACT TGTCTTGGCTTTTGTGGCTGTCCACCGTGATTTTAGCTTCACCGTGTTTTCCACCATATATCCGAGCATGCTGAGAGACA GAACTTCTAAAGAATAGTTGAATTTGATCCTGAGGTAGTAATTAACCATTCTGGTAGCTATTCTACAAATTTGATATAGG CTTCATGTCTTTATCATGTTGCAGATGTGGATGAGTGCAGAGAGAAATTGGCCTGCCAGTGCCCAGAGTGCAGCTGCAAA AATACCTGGGGGAGTTATGAATGCACATGCAGTAATGGTTTGTTCTACAATCGAGAAAATGACATTTGTATTGGTGAGTT TGTTTTTCCAGTTTTTCTAACTCTTTTTGTATGCCATTTTGGAGTCTACCTTACTGAATAGGAAGATTTTGTGTGATCAT TTAATTTAATGAATGACTCTTCAATAAAAACATCACTTTGCAGTTTGCCTCAATAATGCTCATACTGCACTCAATAATAC TCTTTACATAGCTACCTGGGTTTAATATTATATGTATCCTATATGTAGTTTATTAAGTTTTCTAAATTTTGTTATGGGCT TTCTAATTATCTATGATGATACTCCTTGCATAGCTATTGACACTTTGAAAAGAGCTATTGAGTTATTTTTCATTTTTGTG ATATCTTACAAGTGCAGGCAAATATGCGGCTTCAGTGTCTAGCGGGGGCTTTGTTTGGATGGTTTTTATTATCTTGGCTA TGGCTGGCGCTGGAGGGTATGCATTTTACAAGTACAGAATCCAGGTATGATTCTTGTTGACTCAATGTTTTGTCCTTGAA CAGTGTGGCTTTGACCCAAAAAAAGATCCATAGGACAGATGTAGAGAAAAATGAATTAATGTTCAAGTATTAATCCCCTT CCAATAACTGAAAAAAACTACAAGCTTCATACTTCTTTAATTAAAATGATGACAGATGGCTATGTATGGTTAGTTATCCA TACTTTCTAAATGCTTTTATAATTTTATTACACTGCAGAACTCAATTATGTCAATTCATGCACTTTGCATTCCTTCTACA TCCCTTTAATGTGAATGTGATGGCAATGAGAGGGAGATACAATCAAAATAATAGATGAGAAAAGAAAAGGTGTGGAGTGA AAAAAAATTGAAGTGTGAAAATATTTATCCTTAGTTGCCAACTAACATTAGTTAATACTCCCTCCGTTCCTAAATATAAG ACCTATTCCAAAAAATTGCGCTTATTAAGGAAGTATTTAATGTGACTAATTAGTGTATTGATTTTTTAAAAATGCATCCA TTCTTCCTTATTTACCCTTTGTTATTTTCTCTCACTACTAATCATTGCATTTATATACTTATTATACTTATTGATTTCAA AAAAAAAAATCATTTTACTATACTTAATTGTTCAACCGGTAAAGAAACGCTTCCTTTTCTCTCTGTCATTTGAACAACGA ATTTTTTTTTGTTCCCACCAAACTAACTTAAACTAAATTTGGTTCCCACCAAACTAAATTAAAACAATTATACATTTCCT CCAAACTAAACCAAACCGTTTCCAGTTCCCATTTAAACATAAGTCCTTTTTGAACTTCATGCTCTTTTAACAATGGAGAA GAAAACAGGAGAAGAAAAGATGAAAGGGGAGAAGAAAAGATGAATATTGTGTGAAGAAGAAAAGAAAAGTTCAGAATTTA TGCACTCACCATTGATATCCCAAAAGTCATAGTAGTAATTAATGGTAGGTGGTAACTTTGGAATTGAAAACAAGTAATTA ATGTGGAGGGTAAAAATGGAAGAGTACAAAACCTTTTGTTAGATTATTGTAACTAGGTCTTATATTTAGGAACTTCAAAA TTTTGAAACTAGGTCTTATATTTAGGAACGGAGGGAGTACTTAATACTTAAAAATTCAATATAACAGTAAAAATTGGAGA TTATTAACAGGTGTTATTTATTTAGGCATTGACATCCTAAAATTGTTTAAATTAAAAGAGAAACCACTTTTGTGCAGAGA TATATGGATTCTGAAATAAGGGCAATTATGGCCCAATACATGCCCTTGGATAATCAACCTGAGAACTCCAATCTAGTTCA CAATGATGTCTAGAAGATGCAGGAAAAGCTGCTACATCCTCTGCAAAGATTAATTTGAAATTCAGTACATCAGCTGCAGT TGTTTTAGTTATTGATACAGAGAAAAGCCATTTAACCTGAGGCTCCTAGCAGCACGCTCAGTTAGTATCATCCTTACCCC TTGAGGTTTTTTTTTTCCTCCAAATTCTTTCGCTTATTTTGTTCTTTCTTTATTTGCTCAAAGTGGATGGTTTGATTCTT TTTGGATGTAAATTTCAACAAGCTCTGATGTCATATTGGGGAAGTATCAATAGGGAGTTACAAGTCATGCCCTTTTTCTC TTCTTTAGGCCCCTTTAAGTTGCATCATAATGATACTCAACTTAGGAGTTTTTATTTGGCATGGAAAGAGGTAGAGTTCA TAATTTTTACAATTTGTTGTTAAATACTATACTATGAAATACATTTTGAGTATTTGAACTCAAGCAAAAATTAGTTAATA T
CDS sequence (LotjaGi3g1v0050900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAATGAGGAGGACAAAGCTAAGTATTTTGTGGTGTGTATGGATTTTCCTTTGTGGATCTTGTGTGGCCAGATTTGT AGTGGAGAAAAACAATTTGAAAATCACTTCTCCGAAATCATTGAGAGGCATATATGAATGTGCCATTGGGAATTTTGGAG TTCCAAAGTATGGTGGAACCATGATTGGGACTGTGGTATTCCCAAAGTTGAATCAGAATGGATGCAGCAAATTTGATGGT ACAGATGCCTTGAGTTCCAAGCCTGGAGGCTTCCCTGCCTTTGTTCTTGTTGATCGAGGAGATTGCTTCTTCACTTTAAA GGCTTGGAATGCTCAGAACGGTGGAGCAGCAGCTATTCTTGTTGCAGATGATAGGATAGAGCCCTTGATCACCATGGACA CTCCTGAAGAAGGGAATGGTGAAAAAGATGATGATTACATTGAAAAGATTAACATCCCTTCTGCTCTTATCAGCAAAGCA CTAGGTGATAGCATCAAATCGGCTCTCTCTAATGGAGCAATGGTTAACGTAAATCTCGATTGGCGAGAGGCTCTTCCACA CCCTGATGAGAGAGTAGAGTACGAGTTTTGGACAAGTAGCAATGATGAGTGTGGACCAAAGTGTGAGAATGAGATCAACT TTGTGAAGAGTTTTAAGGGTGCAGCTCAACTGCTTGAGAAAAAGGGGTTCACTAAGTTCACCCCTCACTACATAACTTGG TATTGCCCAGAAGCATTTATCTTGAGCCAACAGTGCAAGTCTCAGTGCATAAACAATGGGAGGTACTGCTCGCCGGATCC TGAACAAGATTTCAGTAGAGGGTATGAGGGCAAAGATGTTGTTGTTCAAAATTTACGGCAAGCTTGCTTCTTTAAAGTGG CAAATGAAAGTGGAAAACCTTGGCAATGGTGGGACTATGTGACTGATTTTTCAATTCGTTGCCCGATGAGAGACAATAAG TACACTGAAGAATGCTCGGATCAAGTTATTAAATCACTTGCTGTTGATTTAAAGAAGATTAAAGACTGTATTGGGGATCC TCAAGCAGATGTTGACAATCCTGTTCTTAAGGCTGAACAGGATGCACAGATTGGAAAAGGCTCTCGTGGTGATGTTACTA TATTACCCACTCTTGTTATGAACAACAGACAGTATAGAGGTAAGCTGTCAAAAGCAGCAGTCCTGAAGGCACTCTGTGCA AGTTTCCAAGAGACTACTGAGCCTTCCATTTGTTTAACTCCAGACATGGAAACAAACGAATGTTTGGAAAACAATGGTGG TTGTTGGCAGGACAAATCTGCAAATATTACTGCTTGCAGGGACACTTTCCGAGGAAGAGTATGTGAATGCCCTATTGTAC AAAATGTGAAATTTGTGGGTGATGGATATACCCACTGTGAAGCTTCAGGAGCCTTGAGGTGTGCAATCAACAATGGAGGT TGTTGGAAAGGAGCCAGAGGTGGCAGGGCTTACTCTGCTTGTATTGATGACCACACAAACGGTTGCAAGTGTCCACCTGG ATTCAGGGGTGATGGAGTCCACAACTGTGAAGATGTGGATGAGTGCAGAGAGAAATTGGCCTGCCAGTGCCCAGAGTGCA GCTGCAAAAATACCTGGGGGAGTTATGAATGCACATGCAGTAATGGTTTGTTCTACAATCGAGAAAATGACATTTGTATT GGCAAATATGCGGCTTCAGTGTCTAGCGGGGGCTTTGTTTGGATGGTTTTTATTATCTTGGCTATGGCTGGCGCTGGAGG GTATGCATTTTACAAGTACAGAATCCAGAGATATATGGATTCTGAAATAAGGGCAATTATGGCCCAATACATGCCCTTGG ATAATCAACCTGAGAACTCCAATCTAGTTCACAATGATGTCTAG
Protein sequence (LotjaGi3g1v0050900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKMRRTKLSILWCVWIFLCGSCVARFVVEKNNLKITSPKSLRGIYECAIGNFGVPKYGGTMIGTVVFPKLNQNGCSKFDG TDALSSKPGGFPAFVLVDRGDCFFTLKAWNAQNGGAAAILVADDRIEPLITMDTPEEGNGEKDDDYIEKINIPSALISKA LGDSIKSALSNGAMVNVNLDWREALPHPDERVEYEFWTSSNDECGPKCENEINFVKSFKGAAQLLEKKGFTKFTPHYITW YCPEAFILSQQCKSQCINNGRYCSPDPEQDFSRGYEGKDVVVQNLRQACFFKVANESGKPWQWWDYVTDFSIRCPMRDNK YTEECSDQVIKSLAVDLKKIKDCIGDPQADVDNPVLKAEQDAQIGKGSRGDVTILPTLVMNNRQYRGKLSKAAVLKALCA SFQETTEPSICLTPDMETNECLENNGGCWQDKSANITACRDTFRGRVCECPIVQNVKFVGDGYTHCEASGALRCAINNGG CWKGARGGRAYSACIDDHTNGCKCPPGFRGDGVHNCEDVDECREKLACQCPECSCKNTWGSYECTCSNGLFYNRENDICI GKYAASVSSGGFVWMVFIILAMAGAGGYAFYKYRIQRYMDSEIRAIMAQYMPLDNQPENSNLVHNDV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 7 | 7 | - | – | |
| SignalP_EUK | 1 | 24 | 24 | - | – | |
| Phobius | 8 | 19 | 12 | - | – | |
| TMHMM | 9 | 28 | 20 | - | – | |
| Phobius | 20 | 24 | 5 | - | – | |
| Gene3D | 23 | 188 | 166 | 9.2E-51 | – | |
| Phobius | 25 | 571 | 547 | - | – | |
| PANTHER | 28 | 621 | 594 | 7.9E-239 | – | |
| PANTHER | 28 | 621 | 594 | 7.9E-239 | – | |
| Pfam | 87 | 165 | 79 | 2.1E-10 | ||
| SUPERFAMILY | 94 | 174 | 81 | 1.57E-6 | – | |
| Gene3D | 473 | 560 | 88 | 3.5E-8 | – | |
| CDD | 518 | 549 | 32 | 1.32768E-4 | – | |
| SMART | 518 | 560 | 43 | 0.002 | ||
| ProSitePatterns | 518 | 544 | 27 | - | ||
| TMHMM | 572 | 591 | 20 | - | – | |
| Phobius | 572 | 591 | 20 | - | – | |
| Phobius | 592 | 627 | 36 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). |
Expression pattern of LotjaGi3g1v0050900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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