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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0051800 |
| Transcript ID | LotjaGi3g1v0051800.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcription initiation factor TFIID subunit 11; TAIR: AT4G20280.1 TBP-associated factor 11; Swiss-Prot: sp|Q9M565|TAF11_ARATH Transcription initiation factor TFIID subunit 11; TrEMBL-Plants: tr|I3SI80|I3SI80_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0051800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:5430445..5432356) extracted from Lotus japonicus Gifu genome v1.2.
ATGAAGCAATCAAAGGATCCATTCGAAGCTGCATTTGTGGAATCACCACCTGAATCCCCTGTTGAAATCGAGGCCGAGCC AGACGGCGAGGCACAAAACCCTGCATCTAGTTCTGGGGTTGCACAAGCCACTCAAGCCCAGGAAGACGGGAAAAAGCTGA GTAAAACAGGCACCGGCACAAGTGGTAGTGGTGGTGGTGGCAAGAATAAAGATGACGAGGAGGAAGAGGAGGAGGACAAC ATGGATGTTGAGCTTACCAAGCTCCAGCCCACTGGTGACCCCCAAAAAATGGCCAAGATGCAGTCAGTAACATCACTTTT CACTCCAATATCATTTTTTCCTCCTTTCTTTTATATGTTATCAAATAGCGGCTATAGCGTAGCGGATTTTTGGCTAATCG CGACACCTGCTATTCGCCGCCAAATAGCGGCCGAAGCTGAAATAGCATATTTTTGGCTCACCGCGATCGCAATGGTCCAA GGTCGCGATTTGATAACACTGTACTATAATAATTTCATTAATTCTTAATGTTTATCTTCCTCAGGGCTATTTTGTCACAA TTCACTGAAGAACAGATGAGCAGATATGAGTCTTTTAGAAGGGCTGGATTCCAGAAAGCTAACATGAAAAGGGTATTTTT TTCACTTTTTTTTTATAAAAATTATGCCAAAACTTCATTTAGGATTGGGGTTAATAGTTTAGGTCAGGATTAGGATTTTC TAGCGGGATGACGAGCCTGTTTGGTTTTCAGTTGGGTGACTGTGAAAGCACATTCGCTCAACCCAACAAGTGCGTTCTGT TGGCTGAATGTGCATTGGAAATCGTGATATCAAATTCCAATGCTTCAAACGGACTTCCTAACTGAAAACCAAACAGAGTA GACATATATTTGAGTGTAATTTGGTCTGGTTGAAGGCATGGGGCGAGTTTCAATGGCCAGATCTGTGGCTGTATTACTGC CATCAACTGTACCTTGTGGAATCAGCATTTGGGGTTTGGTGGTTCTTAAGAGAAGAAAAAAGGGAATAATGGGCAACTTT TTTGGATTGTTGAATTTTTTTGAAAGACACAACAGGGCTGTTTGCTTTACATTCTTTTGTGGGTAAATTGGGATTTGACT AAGCTGCGTCACAGAATATGAAACAAATGTAGCTCAGTAGCATATGATTTTGTCTTTAAACTTTAGTTTTCTTGATGCTC CTAGTGCGTCCTGCATCATGAGCCAACCTTTCGTTGTATGTTTTGGGAAAATCAATTCTGATGGCATAAGACATTGTCAA ACGTGAAAATTTTAAACCTTTCAGATTATTTGTAACAATTACTATCAGATTTGTCCCATGCTTAGCCACTTGAGTAACCT TGTTCGTGTTTTCTCCTTGGTTATTTAATTCTATAATGGTTTCTGTGAGTTTGTACATTGTTGCGGCTATGGTACTCATG TGCTTTAGTAGTAATTTGCAGACTGCTATTCTTGCATCCCATTCTGCACATTAATTTATATTATAGAAAGATAATATATG ATTGCTCACAAGCTGCCTTCTCTCCTTTTTTGATTCTTGAAAGCAGTTATTAGCAAGCATCACTGGGACCCAGAAAATTA CTATACCAATAACAATTGTAGTATCAGGGATTGCAAAAATGTTTGTTGGTGAAGTTGTGGAAACAGGTTGGTTAGTTTTT CTTTTCCAAGCATGAGAATCTTCATTCTCTGCATGTAGTGTTTTTAAATTCAAAATGTTGCAGTATGCTGTTTCCATTAA TCAAAGGTACTATTATTCTTGCAGCTAGAATAGTTATCAAAGAGAGGAAGGAATCTGGACCAATCCGGCCTTGTCATCTG AGAGAAGCATATAGACGACTAAAGCTTGAAGGGAAAGTCTTTAAGAGATCAGTCCCTAGGCTTTTCCGGTAA
CDS sequence (LotjaGi3g1v0051800.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACGAGGAGGAAGAGGAGGAGGACAACATGGATGTTGAGCTTACCAAGCTCCAGCCCACTGGTGACCCCCAAAAAATG GCCAAGATGCAGTCAGGCTATTTTGTCACAATTCACTGAAGAACAGATGAGCAGATATGAGTCTTTTAGAAGGGCTGGAT TCCAGAAAGCTAACATGAAAAGGTTATTAGCAAGCATCACTGGGACCCAGAAAATTACTATACCAATAACAATTGTAGTA TCAGGGATTGCAAAAATGTTTGTTGGTGAAGTTGTGGAAACAGCTAGAATAGTTATCAAAGAGAGGAAGGAATCTGGACC AATCCGGCCTTGTCATCTGAGAGAAGCATATAGACGACTAAAGCTTGAAGGGAAAGTCTTTAAGAGATCAGTCCCTAGGC TTTTCCGGTAA
Protein sequence (LotjaGi3g1v0051800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTRRKRRRTTWMLSLPSSSPLVTPKKWPRCSQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASITGTQKITIPITIVV SGIAKMFVGEVVETARIVIKERKESGPIRPCHLREAYRRLKLEGKVFKRSVPRLFR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 8 | 8 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 10 | 10 | - | – | |
| Phobius | 9 | 16 | 8 | - | – | |
| Phobius | 17 | 24 | 8 | - | – | |
| Phobius | 25 | 136 | 112 | - | – | |
| PANTHER | 30 | 136 | 107 | 5.9E-59 | – | |
| PANTHER | 30 | 136 | 107 | 5.9E-59 | – | |
| Pfam | 34 | 119 | 86 | 3.7E-32 | ||
| CDD | 38 | 121 | 84 | 4.00496E-37 | ||
| Gene3D | 38 | 127 | 90 | 2.8E-34 | ||
| SUPERFAMILY | 38 | 126 | 89 | 3.46E-29 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Transcription initiation from RNA polymerase II promoter | Any process involved in the assembly of the RNA polymerase II preinitiation complex (PIC) at an RNA polymerase II promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. Promoter clearance, or release, is the transition between the initiation and elongation phases of transcription. | ||
| Molecular function | Protein heterodimerization activity | Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer. |
Expression pattern of LotjaGi3g1v0051800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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