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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0052300 |
| Transcript ID | LotjaGi3g1v0052300.3 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | KH domain-containing protein; TAIR: AT2G38610.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|Q9ZVI3|QKIL3_ARATH KH domain-containing protein At2g38610; TrEMBL-Plants: tr|I1L6X1|I1L6X1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0052300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:5490836..5494769) extracted from Lotus japonicus Gifu genome v1.2.
ATATATGTTTCTCATTTCTATTGTTCTCTATGTGCAGAAATATTAAGAGTCTCTGGAATGTTGTCCAATCAAGGTTTTGG TGACTTTGATAGACTGCGGCATAGAAGCCCTAGTCCTATGGCTCCTTCGAACCTCATGTCTAATGTCCCTGGGACAGGAT TGGGTGGATGGAATGGTCTTCAGCAGGAGGTGACTGCTGCTCAAATTATTTATCTTTACATCTTAATTTGATACCCTCAA CTTATGATTGTCTCACTATCATAGTTTGAGTATCATTTGTTCATGCAGACAAAACTTATTTTTTCTACTTTATGTTCATG ACAATGTTAAAGAGTGTGTCACCTACAGTTGACTCAATGGTCTGGATAATGATATAAAAGTTTCAACTCATTATTTAGTG TGCTAATTTCTTTCTTTCATTCATTCTCTAATAATAATGAAAGAATTAGTATATGACCAGGATGCTGTTGATGGTGTAGC TTGATCAAATAACACAGCACAAAGAAAGTAATTATTAAAATATAAATATTTGGGATAGCATAATGGCAGTGGAGCCTATC CTTGATTAGAGAAAAAGGTTAGTACTCTAGAGTCTAGAAAAGAGAAAAAAAAGCATTTAAGATTTCTGAAAAGCCTCCCA AATTCTAATATGGTATCAAAGCCCATCTTAGATCCATTTAGTGGAGACCACCCGTATATGGGCCATCCGTAGATGTTTAT TCCTGCATTGCACGAGGATATAGGATTGGCTTTGATACCATAGAGCATTGCCACCTGTATATGGTATGCAGATGTTCATT CCTGGGCGTGAGGGGTGGTGGCCCTTACATATAGGAAGAAAATCCTCACCTCTTGAGCTAGCTATTGGGGTAGAGTTAGG CCTCCCAAATTCTAATAAAGATTAAATGATCTCTTGTCCTTAATCAGGGAATTGTATACTGCTAACCATAGGAGAGAGGA GGTTCTGTTCTATGTGAATTTATGGCAAATCATTTCTACTTATCCTATACGGCATTGCCATCAAAAGTTTCACCTTATAG GGGACCTTGGGCTTCCCAAGGAAGTTATCAAGAAAAATGCGATGCGAGACATTATAAGTAGGATTCACTTAAAACCCCTT GTGGAATTTGGAGTCTGACTCTCTGTCTGCTGAAGAGGAGGAGAAATAAGACTCAAGAAAACCTAGAAGAGATTCCATTG AAAAGCTTCACCCAATCGTTCAATTTGAGAAAAATCATAATTCCAAGAAATGTAAGAGGCGTGGAGAAAGTAGAAACTGC TCTTTGAATAATCAGGTGGTGTGGACTGTAAATGCATTGGTGGATATATCTAATAGAAATTCTGACTGATCATTTTACTA TCCATACAATGCAGAAGACATTGTTCAATATTGAACTGGTGGCCGTAAGCATTCCTGGTTTGTTGGTTACCTGGATGGAG AATGCTAGTTCTTGTCTTTCTTTTTCTATAGCAAAAGGCTTTATCATTTGTTCTATTCTTTTCCGTGTCCTTTTTCTTCA ATGTATAAGTTTTTGTATATAAGATGACATTCTTTTTTTTTTTTTGCAAAGCAGAGATTATGTGGAACTCCTGGAATGAC AATGGACTGGCAAGTTGCCCCTGCAAGTCCTACTTCATACACTGTTAGAAGGATATTACGCTTGGAAATTCCTGTTGATA CATTCCCCAATGTAAGCTGTTATATGAATTACAGTTTAATAATGGAAAATTAATCACTGAATCTAACCACTATCATTATC TTCACTGAAATTAAAGGTTCTATCATCTAGAACTAATTTAAATATATTGGTCTTTATTGCATTAGTTCAATTTTGTTGGA AGACTTCTGGGACCTAGAGGCAATTCTCTGAAACGGGTAGAAGCAACAACAGGTTGCAGGGTGTTTATTAGAGGAACAGG ATCTATAAAGGATCCAGACAAGGTAATGCAGATATATATGATTTTTCAGGTTTAATATTGCAAAATGTGTAAAGCAATTT ATGCTTCATTTTATTAATCTGTATGTGTATGTTTTTGTTTAATAATCATTTTTATCCTTTCAATCTTAAGGAAGAGAAGT TAAGAGGAAAACCAGGCTATGAGCATCTCTATGAGCCGCTCCACATATTGATCGAGGCTGATTTACCTGCTAATATTGTT GACATCAGGCTTAGGCAGGCTCAGGAAATCATAGAAGAACTGCTCAAACCTGTCGTAAGTTCCTTCACTTTGTCTTAATA TTCTCTGTGTTCTTCTGGAAGAGCTGGATGCTATTCTGCTTCACTATTGTCTAAGACCAATGTTGAGGTAGTGATCCTGG AAAGTGTACACACATTGAAAACTTTATAACTCCCAAGTAAATGTAATGAAATCACTTATTTTCAATGTTCTTAGGTTTTC AAGTTGAATAATTAATTTCGTGGATGAGTGATATCATTTGATTCTTTGAAGTCAAAAAGAAAAAAAGTTTCCAGTTTAGA TTTTAAATGACTTGATAGCTCTAAGGTTTTCCACTTTACATTTAACTCTCTAAAGTTTTCCTGAACTTCAAAGAAGTCAA AGTTGACTTCTTAATATTCAGTTGGAGAATAGATAATATACCTTTTGCCTATCCCTTTTTCTAGAAATATTCTGTTGGGA TCACGTTAAACTAGCAGATTAAATTGGTGGAGAATATCTTCAAATATGGTGCAATTTGAAACCTTTTGCAGTTCAAGCAG TTTGTTCGAGCTCTATCATCCTTGACACTGCCATTGCAAGCCAAGAATATGTAAACTTATTATTGGAGTTATAGGGTTTT AGATAAAGAAGGATATGAGAGAAATAAAAAAGGCTTTATCTTGATATGATATATAATGTGATAGTAAAGACACCACTAAC CCTTTCGTATACTGATACTGGATTCCTGATCCTAATTAAGTGAGGAGACTAATTATGATAATTATTAGACTTCTAATCCC AATTAGATAAGGAAAAAGATCATAAAATATAAAGAATAGAAACTAATCCTAAGATCATGAGGAAGTGTCACATTCTGTTT GGAGATATTTTTGATATAATCCAATAACACTTCCTCTCAAGCTATAATCAATTTAGTTTGAGACAGTAGACTAGTGGGGC CAGGTTACTGTCTCTGAGACCTCACAGGGGGGATGGTACCACTTCAAACTAACTTAAGAGATGTAGATTTTCTAAACCTT TATATATGTGGGATCTTAAAACACCCACTCACGCCTAGGAGATTGGACTGGTGTGTACATATGTTTGTGAGACTAATTTT TCAGGAGTGTTAAGCTGCTTTCATTGGGATAACTACAGGGCCTGACTGATTCTGACCCATTTGTGCGTGGCTTGATATTG GATCAAAGATGGGTTTTGATACTATGTTGAAGACACAAGGTTTTAGAGAAAGAGAGGAGGGGAAGAACAAAGGCTTGTTA TGATATGATGATATATGATGTGATACAAAAGGCAAAGCACCAATATTTATCTATACTAATACTAATTAAATAAAGAATGG AATGTAATTATGATAATTGCTAGACTACTAATCCTAATTAAATAAAGAAACAAATCATAAGATATAAAGAAATAACTGAC AGGCTTGGTTGTTATTGCAATCCTAAGATATAATGTAAGATACTCTAGGATAAGATAATGATAATTTATGACATTTTGTT ATATAATCTGACACTTCCTCATTGTAATTATTTTGTGGGTTCATCTTAGTTGTGAAATGATTATTTTTATATTTGCTTTC TCATGGATGCCAACTTCTGATATGCAGGATGAGTCACAGGACTATGTCAAGAAGCAGCAGTTGCGGGAATTAGCATTGCT GAATTCAAATTTAAGAGAAGAGAGTCCTGGGCCAAGTGGTAGTGTATCTCCATTTAATTCTGGTGGAATGAAAAGAGCAA AAACTGGCAGATGA
CDS sequence (LotjaGi3g1v0052300.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGTCCAATCAAGGTTTTGGTGACTTTGATAGACTGCGGCATAGAAGCCCTAGTCCTATGGCTCCTTCGAACCTCAT GTCTAATGTCCCTGGGACAGGATTGGGTGGATGGAATGGTCTTCAGCAGGAGAGATTATGTGGAACTCCTGGAATGACAA TGGACTGGCAAGTTGCCCCTGCAAGTCCTACTTCATACACTGTTAGAAGGATATTACGCTTGGAAATTCCTGTTGATACA TTCCCCAATTTCAATTTTGTTGGAAGACTTCTGGGACCTAGAGGCAATTCTCTGAAACGGGTAGAAGCAACAACAGGTTG CAGGGTGTTTATTAGAGGAACAGGATCTATAAAGGATCCAGACAAGGAAGAGAAGTTAAGAGGAAAACCAGGCTATGAGC ATCTCTATGAGCCGCTCCACATATTGATCGAGGCTGATTTACCTGCTAATATTGTTGACATCAGGCTTAGGCAGGCTCAG GAAATCATAGAAGAACTGCTCAAACCTGTCGATGAGTCACAGGACTATGTCAAGAAGCAGCAGTTGCGGGAATTAGCATT GCTGAATTCAAATTTAAGAGAAGAGAGTCCTGGGCCAAGTGGTAGTGTATCTCCATTTAATTCTGGTGGAATGAAAAGAG CAAAAACTGGCAGATGA
Protein sequence (LotjaGi3g1v0052300.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLSNQGFGDFDRLRHRSPSPMAPSNLMSNVPGTGLGGWNGLQQERLCGTPGMTMDWQVAPASPTSYTVRRILRLEIPVDT FPNFNFVGRLLGPRGNSLKRVEATTGCRVFIRGTGSIKDPDKEEKLRGKPGYEHLYEPLHILIEADLPANIVDIRLRQAQ EIIEELLKPVDESQDYVKKQQLRELALLNSNLREESPGPSGSVSPFNSGGMKRAKTGR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 217 | 217 | 1.0E-137 | – | |
| MobiDBLite | 1 | 26 | 26 | - | – | |
| PANTHER | 1 | 217 | 217 | 1.0E-137 | – | |
| Gene3D | 15 | 199 | 185 | 6.0E-57 | ||
| SMART | 68 | 168 | 101 | 1.4E-6 | ||
| CDD | 73 | 193 | 121 | 3.56897E-51 | – | |
| SUPERFAMILY | 75 | 193 | 119 | 4.62E-31 | ||
| Pfam | 85 | 121 | 37 | 1.4E-5 | ||
| MobiDBLite | 189 | 218 | 30 | - | – | |
| MobiDBLite | 193 | 209 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of LotjaGi3g1v0052300.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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