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LotjaGi3g1v0052300.5

Overview

Field Value
Gene ID LotjaGi3g1v0052300
Transcript ID LotjaGi3g1v0052300.5
Related isoforms 4
Lotus japonicus genome version Gifu v1.2
Description KH domain-containing protein; TAIR: AT3G08620.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|Q8GYR4|QKIL4_ARATH KH domain-containing protein At3g08620; TrEMBL-Plants: tr|I1L6X0|I1L6X0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0052300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:5490836..5496357) extracted from Lotus japonicus Gifu genome v1.2.

ATGTCAGGTTTGTACAATCCCAACTTCTCACCTTCACCTGTGAGAGCTGCTGCAGCTTCTGCTCAGATTAGAGGCACCCC ATCTTCAGAAATGGATAGGTTTGTGTTTTACATCTGTTTTTATCATCATCAGCATCTTCTTTGATTCATGAATAGTTATG GAGGATGTTAAAGTTTTGATTTTTAACTTTTTTTTGTTGTTTTTTGGTGTTTTGCAGTCAGTATCTGTCAGAGTTGCTGG CAGAGCGTCAAAAGCTTGGACCTTTCATGCAAGTGCTTCCTACATGCAATCGCCTCTTGAATCAAGGTTTAGGGTTCTTC TTCTTTTACTTCAAAGTTGCCAACTTTCTTGATTTTGGATCTGTTTTTTTCTGTATTTCTTAGTGTGTTTCTCCAAAGTT GCATGCTTGATTGTGCCCAGATCGCCTTTGTTGTCATAATTTTGTTGAGTTTTCATTGTGGTGGCATCATTTTGTTCTTA CTTCAGTTGACTGTATTGAGTGGTGGGTTAAAACCCTGAATTACCATGTGTGTGTGTTCAATGGCATCTGTGCCTTTTGC AGAATGTACCTTCATTGTTGTGTCTTTGTAAACTAAGTCCATTTTGCAGAGCTTCTGTTCTATGTTTTGGGGTCATTTTG AAATTCATTGGTTAAATCAAATGGAAAGCAAGCAATGGAAATTTTTACTGTTGATAATCTTGCTCTTCCTTGATGAGTTT TAAAATTTGAGTTGTATGTGTTCCTGGGGTTTGTTTGAACTTGAAGCAGATATCCTGCATTATCTTTTGACCACTAAAAG AAAATCCTTAGACTGGGACCTCGGTCATATTCTGATTGAAAATGTTAGGGGTGGAGAATTTCACTTGATTTTTTCGTCTA TGAAGTTGGCAAAATAACTTCTTACTTGCGGTTTGGGCCTTGCAATGTGCTTCAATGAGTGGTACAGAGGGAGGAGAAAA ATGACCCGAACCTTATGGGGCAAGGGGGTTGATGTGTTCCTTACTCCCTGTCCCACTTTTTGTTTTTTTCTACAAGCAGC AAGATTCTTGCCCCTCAAATTGGGGGAAAGTGGGAAAATTCGTATGGGGAAGAAAATGTGATACTTGTTACAGGGAGAGG ATGGGCAGACTAAGGTGGCTTCAGTGGGATTTGATCCTTTGATCAATCAGTTCTTAGAGGCCCCTTGTGTCAATTGAGCT AAGATTCCTGGCTCCTCTGCTTCAACCCCCAAATTAGGGGCATAATGTATTTCCTTCTCATCCATGCAAAAGTTCCCAAA AATTGCTTTAATAAAGAGTCGATGTTATCTGTTGGACCAGTACCTTCAATTTAGGGACAGTTGACTGTAGTAGACATTGC ATGCGGAATTTAGGCCTTGAATTAGGCTATCCTGTACTGTTTCTGTCAGTATTTGACTTTGGCTGATATAGTTTCGTCAG AGATGTAAAACCAAGTGCCTTCACCTAGTAACTTATACTTTTAGAAGAGAAGGTCTTTGACAAATCGTTTCAAATGATGT CCTCATGTAAATAATATATGATCTCATCTTGTTCATTTCACGAGCTATGTTCATTTTTTAAATCACACATATATGTTTCT CATTTCTATTGTTCTCTATGTGCAGAAATATTAAGAGTCTCTGGAATGTTGTCCAATCAAGGTTTTGGTGACTTTGATAG ACTGCGGCATAGAAGCCCTAGTCCTATGGCTCCTTCGAACCTCATGTCTAATGTCCCTGGGACAGGATTGGGTGGATGGA ATGGTCTTCAGCAGGAGGTGACTGCTGCTCAAATTATTTATCTTTACATCTTAATTTGATACCCTCAACTTATGATTGTC TCACTATCATAGTTTGAGTATCATTTGTTCATGCAGACAAAACTTATTTTTTCTACTTTATGTTCATGACAATGTTAAAG AGTGTGTCACCTACAGTTGACTCAATGGTCTGGATAATGATATAAAAGTTTCAACTCATTATTTAGTGTGCTAATTTCTT TCTTTCATTCATTCTCTAATAATAATGAAAGAATTAGTATATGACCAGGATGCTGTTGATGGTGTAGCTTGATCAAATAA CACAGCACAAAGAAAGTAATTATTAAAATATAAATATTTGGGATAGCATAATGGCAGTGGAGCCTATCCTTGATTAGAGA AAAAGGTTAGTACTCTAGAGTCTAGAAAAGAGAAAAAAAAGCATTTAAGATTTCTGAAAAGCCTCCCAAATTCTAATATG GTATCAAAGCCCATCTTAGATCCATTTAGTGGAGACCACCCGTATATGGGCCATCCGTAGATGTTTATTCCTGCATTGCA CGAGGATATAGGATTGGCTTTGATACCATAGAGCATTGCCACCTGTATATGGTATGCAGATGTTCATTCCTGGGCGTGAG GGGTGGTGGCCCTTACATATAGGAAGAAAATCCTCACCTCTTGAGCTAGCTATTGGGGTAGAGTTAGGCCTCCCAAATTC TAATAAAGATTAAATGATCTCTTGTCCTTAATCAGGGAATTGTATACTGCTAACCATAGGAGAGAGGAGGTTCTGTTCTA TGTGAATTTATGGCAAATCATTTCTACTTATCCTATACGGCATTGCCATCAAAAGTTTCACCTTATAGGGGACCTTGGGC TTCCCAAGGAAGTTATCAAGAAAAATGCGATGCGAGACATTATAAGTAGGATTCACTTAAAACCCCTTGTGGAATTTGGA GTCTGACTCTCTGTCTGCTGAAGAGGAGGAGAAATAAGACTCAAGAAAACCTAGAAGAGATTCCATTGAAAAGCTTCACC CAATCGTTCAATTTGAGAAAAATCATAATTCCAAGAAATGTAAGAGGCGTGGAGAAAGTAGAAACTGCTCTTTGAATAAT CAGGTGGTGTGGACTGTAAATGCATTGGTGGATATATCTAATAGAAATTCTGACTGATCATTTTACTATCCATACAATGC AGAAGACATTGTTCAATATTGAACTGGTGGCCGTAAGCATTCCTGGTTTGTTGGTTACCTGGATGGAGAATGCTAGTTCT TGTCTTTCTTTTTCTATAGCAAAAGGCTTTATCATTTGTTCTATTCTTTTCCGTGTCCTTTTTCTTCAATGTATAAGTTT TTGTATATAAGATGACATTCTTTTTTTTTTTTTGCAAAGCAGAGATTATGTGGAACTCCTGGAATGACAATGGACTGGCA AGTTGCCCCTGCAAGTCCTACTTCATACACTGTTAGAAGGATATTACGCTTGGAAATTCCTGTTGATACATTCCCCAATG TAAGCTGTTATATGAATTACAGTTTAATAATGGAAAATTAATCACTGAATCTAACCACTATCATTATCTTCACTGAAATT AAAGGTTCTATCATCTAGAACTAATTTAAATATATTGGTCTTTATTGCATTAGTTCAATTTTGTTGGAAGACTTCTGGGA CCTAGAGGCAATTCTCTGAAACGGGTAGAAGCAACAACAGGTTGCAGGGTGTTTATTAGAGGAACAGGATCTATAAAGGA TCCAGACAAGGTAATGCAGATATATATGATTTTTCAGGTTTAATATTGCAAAATGTGTAAAGCAATTTATGCTTCATTTT ATTAATCTGTATGTGTATGTTTTTGTTTAATAATCATTTTTATCCTTTCAATCTTAAGGAAGAGAAGTTAAGAGGAAAAC CAGGCTATGAGCATCTCTATGAGCCGCTCCACATATTGATCGAGGCTGATTTACCTGCTAATATTGTTGACATCAGGCTT AGGCAGGCTCAGGAAATCATAGAAGAACTGCTCAAACCTGTCGTAAGTTCCTTCACTTTGTCTTAATATTCTCTGTGTTC TTCTGGAAGAGCTGGATGCTATTCTGCTTCACTATTGTCTAAGACCAATGTTGAGGTAGTGATCCTGGAAAGTGTACACA CATTGAAAACTTTATAACTCCCAAGTAAATGTAATGAAATCACTTATTTTCAATGTTCTTAGGTTTTCAAGTTGAATAAT TAATTTCGTGGATGAGTGATATCATTTGATTCTTTGAAGTCAAAAAGAAAAAAAGTTTCCAGTTTAGATTTTAAATGACT TGATAGCTCTAAGGTTTTCCACTTTACATTTAACTCTCTAAAGTTTTCCTGAACTTCAAAGAAGTCAAAGTTGACTTCTT AATATTCAGTTGGAGAATAGATAATATACCTTTTGCCTATCCCTTTTTCTAGAAATATTCTGTTGGGATCACGTTAAACT AGCAGATTAAATTGGTGGAGAATATCTTCAAATATGGTGCAATTTGAAACCTTTTGCAGTTCAAGCAGTTTGTTCGAGCT CTATCATCCTTGACACTGCCATTGCAAGCCAAGAATATGTAAACTTATTATTGGAGTTATAGGGTTTTAGATAAAGAAGG ATATGAGAGAAATAAAAAAGGCTTTATCTTGATATGATATATAATGTGATAGTAAAGACACCACTAACCCTTTCGTATAC TGATACTGGATTCCTGATCCTAATTAAGTGAGGAGACTAATTATGATAATTATTAGACTTCTAATCCCAATTAGATAAGG AAAAAGATCATAAAATATAAAGAATAGAAACTAATCCTAAGATCATGAGGAAGTGTCACATTCTGTTTGGAGATATTTTT GATATAATCCAATAACACTTCCTCTCAAGCTATAATCAATTTAGTTTGAGACAGTAGACTAGTGGGGCCAGGTTACTGTC TCTGAGACCTCACAGGGGGGATGGTACCACTTCAAACTAACTTAAGAGATGTAGATTTTCTAAACCTTTATATATGTGGG ATCTTAAAACACCCACTCACGCCTAGGAGATTGGACTGGTGTGTACATATGTTTGTGAGACTAATTTTTCAGGAGTGTTA AGCTGCTTTCATTGGGATAACTACAGGGCCTGACTGATTCTGACCCATTTGTGCGTGGCTTGATATTGGATCAAAGATGG GTTTTGATACTATGTTGAAGACACAAGGTTTTAGAGAAAGAGAGGAGGGGAAGAACAAAGGCTTGTTATGATATGATGAT ATATGATGTGATACAAAAGGCAAAGCACCAATATTTATCTATACTAATACTAATTAAATAAAGAATGGAATGTAATTATG ATAATTGCTAGACTACTAATCCTAATTAAATAAAGAAACAAATCATAAGATATAAAGAAATAACTGACAGGCTTGGTTGT TATTGCAATCCTAAGATATAATGTAAGATACTCTAGGATAAGATAATGATAATTTATGACATTTTGTTATATAATCTGAC ACTTCCTCATTGTAATTATTTTGTGGGTTCATCTTAGTTGTGAAATGATTATTTTTATATTTGCTTTCTCATGGATGCCA ACTTCTGATATGCAGGATGAGTCACAGGACTATGTCAAGAAGCAGCAGTTGCGGGAATTAGCATTGCTGAATTCAAATTT AAGAGAAGAGAGTCCTGGGCCAAGTGGTAGTGTATCTCCATTTAATTCTGGTGGAATGAAAAGAGCAAAAACTGGCAGAT GA
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0052300.5) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTTCATTCCTGGGCGTGAGGGGTGGTGGCCCTTACATATAGGAAGAAAATCCTCACCTCTTGAGCTAGCTATTGGGCA GAGATTATGTGGAACTCCTGGAATGACAATGGACTGGCAAGTTGCCCCTGCAAGTCCTACTTCATACACTGTTAGAAGGA TATTACGCTTGGAAATTCCTGTTGATACATTCCCCAATTTCAATTTTGTTGGAAGACTTCTGGGACCTAGAGGCAATTCT CTGAAACGGGTAGAAGCAACAACAGGTTGCAGGGTGTTTATTAGAGGAACAGGATCTATAAAGGATCCAGACAAGGAAGA GAAGTTAAGAGGAAAACCAGGCTATGAGCATCTCTATGAGCCGCTCCACATATTGATCGAGGCTGATTTACCTGCTAATA TTGTTGACATCAGGCTTAGGCAGGCTCAGGAAATCATAGAAGAACTGCTCAAACCTGTCGATGAGTCACAGGACTATGTC AAGAAGCAGCAGTTGCGGGAATTAGCATTGCTGAATTCAAATTTAAGAGAAGAGAGTCCTGGGCCAAGTGGTAGTGTATC TCCATTTAATTCTGGTGGAATGAAAAGAGCAAAAACTGGCAGATGA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0052300.5) extracted from Lotus japonicus Gifu v1.2 Proteins.

MFIPGREGWWPLHIGRKSSPLELAIGQRLCGTPGMTMDWQVAPASPTSYTVRRILRLEIPVDTFPNFNFVGRLLGPRGNS LKRVEATTGCRVFIRGTGSIKDPDKEEKLRGKPGYEHLYEPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYV KKQQLRELALLNSNLREESPGPSGSVSPFNSGGMKRAKTGR
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.30.1370.10
21 182 162 8.9E-57
IPR036612
PANTHER
PTHR11208
29 200 172 8.8E-111 –
PANTHER
PTHR11208:SF59
29 200 172 8.8E-111 –
SMART
SM00322
51 151 101 1.4E-6
IPR004087
CDD
cd02395
56 176 121 7.36696E-51 –
SUPERFAMILY
SSF54791
58 176 119 3.63E-31
IPR036612
Pfam
PF00013
68 104 37 1.2E-5
IPR004088
MobiDBLite
mobidb-lite
172 201 30 - –
MobiDBLite
mobidb-lite
176 192 17 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0052300.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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