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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0053600 |
| Transcript ID | LotjaGi3g1v0053600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Retinal-binding; TAIR: AT5G01010.1 retinal-binding protein; Swiss-Prot: sp|P49193|RALB_TODPA Retinal-binding protein; TrEMBL-Plants: tr|I1MQR1|I1MQR1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0053600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:5584295..5593301) extracted from Lotus japonicus Gifu genome v1.2.
ATTCTTCATTTTCATCCAAACACATTTTGTTATCCAAAAGACACACAGTAGTAGTAGTACTTAAACGTAAAAGCAGAATT TATGAGACGGTGAGTGTTCCCCGACTTTCCCATTCTGTCCCGAAGCCGAAGCGTGGTATATCGGACCCAGAACGAGTACA CACAAAGAATATTCGAATTTCGAAACGAATAGACTTTGAAAAGCGAATACAAGAAGAAGAAAGATCTGATTGATCATTCC TCCGATTCCGATTCCGATTCCGATGGCCGCTTCTACGGAGGGTTTGGTTCCCATAACCAGAGCCTTCCTTGCTTCCTACT ACGATAACCACCCTTTCACTCCTCTTTCCCCCAATGTCGACACCCTCTCTTCTCGCTTGCGTTCCATCGCCGATCATCTT CTCTCTCAGTTCCCTCCAAATCAAGGCTAGTACAGTACTACTTCGCTCATTTTCAATTTCACTAGTTAGCTGTAACTGCC ACTTCTTGCTACCTTTCAATTGAAGATCCTAGTTAGTTTTACATTTCCAGGAAAATTATTGAACTGTTTAGTTTTAGTGT TACTTTTTGTTTTGTTCAATTGCAAATGTTTGGTGACAGACTGCGATATAGGAACAGAAGAGAGAGATTGGGAGAAAAAT GATGGTGCATGGAAGGTGTTGTTAGTTGTTAGTTTGTTACTGTTAGTTGTTCGTGAATTGGGGCTGGATTACAAAATGTC AGCATGTTTTGATTTTATTTCTTACTGAAAACAACTTTAACTGCATTTTCTGCAAACCTTTGAAAATAGTGTCATTTTTG CTATTGAAAGTCAAAATAGAAAACATTTTCTTGAACCGAACATGCCCTGTGTTGCTAAGAAATATTGGATATCTCAATGC ACCTTAGATAAGAATTTTGTATCTTGATATTTTGGTTTTTATGAGTTATATTATTTAGAATAGCTCAAGAGATTCAAATA TCAATCAGTCTGAATATTCTATATCTTCAGTATCACTATCTAGCATTTCATACTCAGGCTTAAGATAGTGTAACCGTGTA AACATTGCTAGTTTGCTCTTCAAACTGCTCCTAGGAGTTGTGTAACTTGACTAACATGATTTTTTGTCTTAGAAATAAAG TAAAAGAAAAGATTGTGTATGGTGTTTGCGCCCAGCTTGTATATGGTGTTTGCACCCTTGTCTTTTAACTGTTTTGCTTT GAGTATAATTTTTTTGCTTTAGAACCTTACCTGAGGATTGATATCGCTACAGGGGAAAGCAATTTAATAAATAAAGCTGA TGCCCAACCTCCGCATAAAATTGATGAGAACATGTGGAGGAACAGAGAGTACATTGAAGAAACGATTTTCTTGCTTGAAA GATCTAATTGGCCAGAGGCGGTAATGTATATGTTTTAATTCGTTATCTCCTGTCTTTAACTGATTTTTTATGAAGGCATT GTTGTAATTCATGAATACAGAACATGGCAGCTTCATGATTTTCCTTTAATATGATTATTCTAACATTCAATTTTCACTTG ATGTTAGTTTTATTTCAAGTTCTTATATAACAATTTAAAGTAAAACAAGTGTGCACATTCTTAGAAAACAGCTATGTTTT GGATGCAGCTGAAACAACAGTCCACACCCGACAATGTTGAACTTGCCACTATGCTTGAGCAGCTGAAACACAAACTTCAT AATACTTTGAAGTCCTTGGAATCTTTCCAAATTAAAAATGCTGAACATGTATTTAACACAGGTACTTCCTTGCCTATAAC TTGAATTGCTTGTTTCCAATTCTTCTAATTGCATCATATCAAGGCAAAGTTCATTCTGCTTTCTCAAATTTGGCTTTTAT TTCTACAGGCTTAGTTATTTTACATTACTTTTCTTAGTGGAAATCATGAACCACCACTATGTCTGTAAGATGTGTATACA GGGGCAAAAGGAGAGACATGAGAAAATTATGGTCGATTTAAGAAGTTCAAGAGAAAGTCTTTGACTTGTAGAGTGCCTCC TACCAAAAACATAAGGCTAAACCTATTTGAAAAAGCAATTTCCTCTATAAGCAAGCTGGAGACTATTTTATTATTATGAT TTTTGGTTTGTTCTATAGTTGATTTTAGACAAGTATTAAACAGTACGTAAAAGGTAAAGACACACCAGTAGTGCAAATAC TCGTAATTGTCTATTCAAGATAGGGAATCAGTTACATGAGGGTCTATATATAGGCCAACAGAAAAGAATGAGTCTCATAG AAAACTCGTAATGTAAACTACTAGATATACTCTAATAGATACAAAGGTCAATGATGATGCAATGGAACTCTCTTTCCCTC CTCAAATTCCTATTCCAAGTGTAAAACTCCCTCTGTTATTTTTTTTCTTATTCTGTATATAATACTTTCAACTGTTCTAT CTAACTAACTGTTGATACAGTTCTTGACTTAGAGTCTATTCTAACCAAGTAACTTCTGATATTTGGGCCAAAACAACTAA CGCATTCACTGTACTCTCTAAAGAGAATCCCTCACTTGAGAAGAGGATTCAAATCAGGCAGCTCTAGGGATCATAACGCT CTCTCCTTCAAAAGAGGGAGAAATTGATCATTGACTTCAGTATTGTGTGGTGGTAAAAATGGAGAGTTAGAAATTATTGA AAAATGACAGATTGTGTTAGAAATATAATATAAAACCATTCATGTGTCAAGTGTCTTCACCTAACCGCTTAAGCTTTTAG GGGAGTTGGTTCATGACATGGTATCAAAGCCTATATCACTAAGTGGTCTAGAGTTCGGACCTTGTTGGCCCCTTATTCTA ATTGAAAAAATTGAAATTTCAGCGCAAGGTAAGTTGGCCTGTGCATTGTCGATGTTTCAAGCCCAATAGGCTATTGCCTG ATGGGGTGTGTTAGAAATATAATATAAAAACATTCGTATCTCTTACTTAATAGCTTAAGCTTTTGGGAATGATGGTTTAT AACAATTTGAGTATAACTTGTGGTCTTATTTGTATTTGCACGTATCAAATTATAAATTTGTTAAGATGTGGAGCATAGAA AAAGAAAATCAAGATGAAACTTCCATCGTCTAGGGATTGATCCCCAGATGCCAAAGGCATGAAGGGTAGAAGTGAAGTTA GATATAAAACTACTCTCTAAACAATTTTTACATGCTCTTCAACACCACAATAATTTGAGTGAATATGCTTTATTATATAA ATAGACTTAAATTAATATTAACAAATTTCTCTATGACAACTACTGGTTAATGGAAATACCCGAGAGGCGAGAGCAATACA TATGCCTACATTTTCAGTTCTCCTTCCCAAGGGATCTTGGAGACTTGGACAACCACTTTACAGTAGATCTTCCTATCTAA TAATGATTTCCTATTATTCCCTTATTTCTATATGTAGGTGTTCGCTGTAAGGTGCATGATAGTTTGTTGGAGTTAATGAT CTGTCATTTTCATTCGGGGTTTCTTTCTGTAGAATAATATGGACAAGTTAGTATCTAAGTGAAGCAACTCTATGGTTATA CATCTGATAGTATATGCTATTATTTTTTTACATGCTTTAACATGAAAGGATATTTTATACGAGAACCGCACACCTCAGTA GTCAGTATGCTTTGCAGGTCATTCTTTCATATTGAGTTTCCGTTAATTTTTGAGATTGAGGTTTCTATTCAACATTTGTG TGATGCATTTAAATTTGTTGACGTGTACTATCAGTGTATTACCTTGCAACTTAGTATCCAGATTTATTATACATATAATG GCTCGTATCATGTCCAGATTCAGTAGTCTAAATTTAGACAGTCGGTTCACTCAAGCTTTTTCCCTCTTTCTCCTCTAACG ACAAAAGTCATATGCAGTTATGACATATTTACCTCAAGACTTCCGAGGAACTCTCCTCAGACAACAACGGGAACGCTCGG AGAGGAATAAGCAAGCTGAGGTGGAAGCTTTGATTAATTCTGGTGGTAGCATACAGGATCGATATGCTCTGCTGTGGAAA CAACAAATGGACAGGTAAGGTTCCACTCTTGTGTTGCTGGTTGTTTTGTGCATAAATTAATACGAAATGTGTATTAAATA AGTTATGGGTCACAGGAGAAGGACATTGGCTCAGCTTGGTTCTGCAACAGGAGTCTATAAAACACTTGTGAAGTACCTGG TTGGAGTTCCTCAAGTATGGCTATCTTGAATTATCCGTACATGGCTGTGCTAGCCTCGTTTACTTTCTTTTTCCTTTTTG TTTGGCATTTATTTTTTCATGTCTGCCAAAATCAGCCTATCCAACTATTTTTGCCTTATATGTAGCTAGATTTAAAATTT TCCAACTGATGAGGTTAGCTCAGTTCTTCTGGTATTTTTTGTAATGTATATTAGTTTAAAATAAGGTCGGTGTTGGAATA TCATACATCTCTCATGTCCTCCTTCCTTACGAGCAGGTTTAGGTTGGTTCATGACTGATATCTTCATCTTGATATTTGTG ATCAATCTGTATGCATTTGGGCTGGAATGAAGTTGTTATTTGGATTATTTTGTCTTCAAGTACTGCTTGGTTTACTCATG ATTTATTTGTATTCTAAAACTTTTTTCTGTTTGAGTTATAGGTATTGCTTGATTTTACTCGCCAGATCAATGATGATGAT GGGTACATAATACTGTTTTTCAGTATTGTTCAATTTTTCTTCCTTCTTATCTGCATGATAATGATGTATAAATAACAATC ACGTGACATCTCTTATCTACTGGTAGGCCGATGGAAGAGCAGCGTCATCGCTATGGACCACCATTATACAGACTCACCTC GATGATTCTTTCTATACGACTCTTTCTGTCATTATCATGGGCACGATATGGGGCTAAGAAACTGTGAGATACCTTATATC ATTGCTAGTATAATTGTTGCTTTTATGGTTGATTTTGCGAAACATTTTCAGACGTTAACCCACCAAGTAATTGTTTTACC CATATAAGTTCAAAAGTGGGCATTGCTATAGCTGGATATTTAGTCTCTTTCTACATTGGAATATTGGATACACTTTATTT CTTGCATTTTCGGGATACAAAAATATTGGATACACTTTATTTCATGCATTTTTGGTATACAAAATTAGGGTTACATGAAT ACAATATTGTGTTAGTAGGGAACCCTATCAATAGTGAAACCAAGCCAATTTACATCCGAGTACTCCATAACTTGAGTGTT TCCTTTGCTTAATATAACAATTCATGATCAAGAGCATTCTTAATGTATTTCAAAACTTGTATCATTGCATTATAATGGTC AATAAAAAGAGATTGCACAAAGTGACTCACCACAATGTCTGCAAGGGAAATATCCAATCTACAGATTGCAAGGTGTTAAG ATTTTGTATCAACTGAAGATATGGCAATGATAGTCCTAATTCCTTATAAAGGGATTCGTAATTCTATCCTTACGAGGTAG CTTTTGAGGCTTAGTTATTCTACGATAATGTTAGAGCCTATTCTAGATCTGGTCTTAGACCTGAAATTTCGCCTTCATTG CAGACCCATAGCTGGCTTCACTGTGACCACCCCAAAAATTCTGCCTTCATTGCGGGTCCTTATCCGCCTTCACTGTGGAC CTATAGCATCTTTCCTTGTTTTCTTTTATTTGTTTTTTGGGTGTAATGATGTTTCAGAATTCATGACTGAGTTTGAAGAT TATTTTCATCATGGTACATAACTGTGAATCTTGCTTCTATTTGGTGTCAGCACACAGTCTGTGGGGGGGGGGGATTCTGC TAATATTTTGCCAATATTTAGAGAGATTGGAGCAAATTTTCGGTCCTCAATGAGTATTGCTCATTTGTGTTTAAGTGATA GTCTTTCATGATTTCATATAATACATGACCACGTGTCATCATTAGAAGTGAATGAGTATATACTTCTGGAGGAACCTAGA TTTTTCCGAGAGATTGAGGGGTTTGTTAGTTTCATTTATAGAAAATGTGGTGTTTCTTGTGTGTTCTTACACCATGAGAT GCTCTATTGTAATCCTCTTCTCTCTCTGTATATAATTTAATAGAGAAAAAGAACAAATGACGGTGTTGGAACAAGCCATT GACGTCTACACCTCGGAATTGCAAAGGTTCATGACCTTTATTAGGTACAATAATGCTTGTGTTAATGTTGATCATACTTA ATTTTGTGATTAATTGTTAATAATCATGTTAAATTGATGCTTACTTTACATCTGGTTCTTTTACTTCAAAATATAGGTTT ACATGTAGAATTTATGGAATTATGCACTGCTTATCATCATTCTTATTTTGGTATTTTGATACTGTGGCTTTTCATAATAT AGCTAATTGGGTTTTCAGAACACATACAACTTTTCACACACACACACACACATATATATATATATATATATATATACACA TCTAATAGCTTTTTGTAGAGTGAAAAGTTAATATACCATTGCATCATGTAATATTATCTTGATGATCATTTATGCTAAAT AATAGATAATTTAGACATTCATGAGTATACAATCTAATAGTTGATATTCACTTACATTTTAAATAGCATACTATATTTCA AAATAAAGTAGTGGGATGAAATGTTAATTAGTTTATGATTTGTATAAAAATTGTATGCTGGATATACTTCAAAAGAATTT TAAATCCAGTGATTAGATTAATGATATTTACCATTTATAAAAGCTATTGAAGGTTGTAAGTATGTTATTTAACTTAAGTG TGAACGGAATTTTTTTTTTCTCACTTCTTTTGCTTGGATTTTTATTCATATTGAATAACTTGATAGTTCTTTTCTACAGT GGGGTATTTGCAAACGCGCCTTTCTTCATTTCTGCAGAGGGTGCAGAAGCAGGGTAAATATCAAATATTGCTTTCTTGTT AATTTATCTGTTTTCAAGTCAATCTTCATGTTCGTCCTTTTCAGGAAAAATGATGACTACAAAGAGATAAGTGTTCCAGC AGGGAAAACTTATGAGGTATGCTTACGAGGCTTTTCAAATTTGTTAACTTGTATTTGTTGATCGTGACGAGTTATTTTGA TTTTGCATCTGGCCATCATTTTTACATTTGGGAACCAAAATTGTATCAGTAAGGTACTGGTATGATATAGTTGTCAATCC CAGCTAGCAGGATGGAATGAATCACCCCAGAAGGACCGTAGTGGGATGACCGCTAAAGATTATTTTTACAAGATAATCAT GTTGTAAATAACTCGCAAAAATTTCTTTTTTTATAATTTAGTATTACTGTTATCTCATATGAAATTTCCTGTTGAATGAA TCTGACTCAGCTGTATTTGTTGTTACTTACAAAAAAAGTTTGCATTGTGCTATTTTTTTTATTTTACAAGGTTTCATGAT AAGTTTTGTTTCTCAGGTTTTACTCTCAGTGGACTCCGTTAACTCATACATTGCATGGGATTTTTCATTAGTACAAGGCA AGATTAATATGGTATTGCAATGCTGCTACACTTTTTTTTTCAGAATGTCATGATATTTACTTGGGCTGTAGTGAACTTCC TTTTGTTTATTGTCAGGATATTGGATTTAGTTTGGAGTTTGAAAGTCCTAGTGGGGAAAAGATTGTAAGTTCGAATGTAA TTTGCGTTTTATCATCTGTATCATATTCTCACTTGGCTTCTTCAAAAGCATTTCTCATGTTATTCTTCATCAGCCATCTC TGTCTTCAATCTTTAAGCCCCCAACCAGCCTTTTCTTTTTCTGGTGTGTTTTGTTCTCTTTGCCCATGTTTTTATTTTAA TTTCTCATTCCATGGTTGCTGATTGGTTACGACACAGCTGATGTTACCTTACGGCCGATACGAGACTGACCAAGTGAGTT TGTCATGTTTGTTGCAGCTTACATACTTTACTAGGGCATTTAATGTGTAAGTACTCATCTTAGATTTTACGCCATATAAT TTAGGGGAACTTCTGCACACTAATGGCTGGAAGCTATAAACTGATCTGGGACAACTCATATTCTACTTTCTTTAAAAAGG TATGTAGGCATGTTAGTTCACTGATTCAGTAAGTTGCAAACTTTTAGTATCCAACATGGTCTGGTTACTCAATAGTCAAT ACTTCCATCTTCTCAGCATGTTAATCCTGTGATGTGAGGCTTGAGGGATGTTGTGTGATTGCTATGTTTCTTTTGTTGTT ACGAATTGGCTGATCCTATGAATTTTGACTGTCCACGCTGACATTTCAACTGAGGATTCTTCACAGCATCTTTTCCTATT TGCATTTTATATTTTATTGTTGTGATTTCTTCATGCATTTTACATTTTGGACTCTGTAGGTGATACGGTATAAAGTAGAT TGTATACCTCCTGTCACAGAACCAGCGCAGGCCGACTGATTCAAAAATTCCGAAGAAGGCCTTTTGAATGAGGCAGGATT GCTGATTGATTTGCTAGTGCTTTTCATCTTATTAAAAATTGAAGTTCCAATCGCTGATGTCAGAGTTTGATACACATTCA ATTTATTCCTGTGAAGGGAAGGGAAAAAGGGAAAGTATTTGTGAACAAAATTAACATATTGTGTAAAATTGTTATACATT TACTCATATCAAGACTGTTGCAAGCCTTCAGTGCACAAATTGCTTGAATAGCAATGTACAAACACAGAAGCATACTGTAC CTATTAAGTAATTGAGCATTCAGTGAGTTTATTAAGCAAGCATTACCTTGTACGTGAATGATTTGGGGCACAGAAGAAAA TTTGATTGATTGTTTATCGATCAAAGCAAGTGGTGTAAAATTGCACCACTTTTAGGGAGAACCTTGTTTTCATCGACTTA GATGGAAAATTTTCCAAAAGTTTACCCAAAACATAACACCCACAACCCATAATTAAAACTTGGATATGCTTCACACTCCA AAAATATTATTTACATATTCCATTCTTTTTTAATTTATTTTCTAAAAGGGCTTTTTGTCAAAATAATGTATCACACCACA CCTTTTATTTTCACATTAACTTCTTTTTCTGGTATCTTTCTCCACCA
CDS sequence (LotjaGi3g1v0053600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCGCTTCTACGGAGGGTTTGGTTCCCATAACCAGAGCCTTCCTTGCTTCCTACTACGATAACCACCCTTTCACTCC TCTTTCCCCCAATGTCGACACCCTCTCTTCTCGCTTGCGTTCCATCGCCGATCATCTTCTCTCTCAGTTCCCTCCAAATC AAGGGGAAAGCAATTTAATAAATAAAGCTGATGCCCAACCTCCGCATAAAATTGATGAGAACATGTGGAGGAACAGAGAG TACATTGAAGAAACGATTTTCTTGCTTGAAAGATCTAATTGGCCAGAGGCGCTGAAACAACAGTCCACACCCGACAATGT TGAACTTGCCACTATGCTTGAGCAGCTGAAACACAAACTTCATAATACTTTGAAGTCCTTGGAATCTTTCCAAATTAAAA ATGCTGAACATGTATTTAACACAGTTATGACATATTTACCTCAAGACTTCCGAGGAACTCTCCTCAGACAACAACGGGAA CGCTCGGAGAGGAATAAGCAAGCTGAGGTGGAAGCTTTGATTAATTCTGGTGGTAGCATACAGGATCGATATGCTCTGCT GTGGAAACAACAAATGGACAGGAGAAGGACATTGGCTCAGCTTGGTTCTGCAACAGGAGTCTATAAAACACTTGTGAAGT ACCTGGTTGGAGTTCCTCAAGTATTGCTTGATTTTACTCGCCAGATCAATGATGATGATGGGCCGATGGAAGAGCAGCGT CATCGCTATGGACCACCATTATACAGACTCACCTCGATGATTCTTTCTATACGACTCTTTCTGTCATTATCATGGGCACG ATATGGGGCTAAGAAACTAGAAAAAGAACAAATGACGGTGTTGGAACAAGCCATTGACGTCTACACCTCGGAATTGCAAA GGTTCATGACCTTTATTAGTGGGGTATTTGCAAACGCGCCTTTCTTCATTTCTGCAGAGGGTGCAGAAGCAGGGAAAAAT GATGACTACAAAGAGATAAGTGTTCCAGCAGGGAAAACTTATGAGGTTTTACTCTCAGTGGACTCCGTTAACTCATACAT TGCATGGGATTTTTCATTAGTACAAGGCAAGATTAATATGGATATTGGATTTAGTTTGGAGTTTGAAAGTCCTAGTGGGG AAAAGATTCTGATGTTACCTTACGGCCGATACGAGACTGACCAAGGGAACTTCTGCACACTAATGGCTGGAAGCTATAAA CTGATCTGGGACAACTCATATTCTACTTTCTTTAAAAAGGTGATACGGTATAAAGTAGATTGTATACCTCCTGTCACAGA ACCAGCGCAGGCCGACTGA
Protein sequence (LotjaGi3g1v0053600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAASTEGLVPITRAFLASYYDNHPFTPLSPNVDTLSSRLRSIADHLLSQFPPNQGESNLINKADAQPPHKIDENMWRNRE YIEETIFLLERSNWPEALKQQSTPDNVELATMLEQLKHKLHNTLKSLESFQIKNAEHVFNTVMTYLPQDFRGTLLRQQRE RSERNKQAEVEALINSGGSIQDRYALLWKQQMDRRRTLAQLGSATGVYKTLVKYLVGVPQVLLDFTRQINDDDGPMEEQR HRYGPPLYRLTSMILSIRLFLSLSWARYGAKKLEKEQMTVLEQAIDVYTSELQRFMTFISGVFANAPFFISAEGAEAGKN DDYKEISVPAGKTYEVLLSVDSVNSYIAWDFSLVQGKINMDIGFSLEFESPSGEKILMLPYGRYETDQGNFCTLMAGSYK LIWDNSYSTFFKKVIRYKVDCIPPVTEPAQAD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 246 | 246 | - | – | |
| PANTHER | 3 | 430 | 428 | 3.1E-226 | – | |
| Coils | 113 | 133 | 21 | - | – | |
| Phobius | 247 | 268 | 22 | - | – | |
| Phobius | 269 | 432 | 164 | - | – | |
| Gene3D | 309 | 422 | 114 | 5.0E-14 | – | |
| ProSiteProfiles | 319 | 421 | 103 | 13.106 | ||
| SUPERFAMILY | 321 | 427 | 107 | 1.7E-19 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0053600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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