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LotjaGi3g1v0060600.1

Overview

Field Value
Gene ID LotjaGi3g1v0060600
Transcript ID LotjaGi3g1v0060600.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description RING/U-box superfamily protein; TAIR: AT3G63530.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q8L649|BB_ARATH E3 ubiquitin ligase BIG BROTHER; TrEMBL-Plants: tr|A0A151R273|A0A151R273_CAJCA E3 ubiquitin-protein ligase rnf12-B; Found in the gene: LotjaGi3g1v0060600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:6401140..6407321) extracted from Lotus japonicus Gifu genome v1.2.

GTAGTGTGAATGTGATTTCTCTTCGTTATAACATTTTTTAAACCCCAAAAAAAATAGTGTCATTGTTTTGTTTTTTTAGA AGGGTTCATTGTATTTTTTAATACATATACGACCAAAATGAAGATATTATTAAAACTAAAAAAATTAATAAATAATCCAA TTTACTTTACTAGTGTTTGTTTATAAAAGTATGTTGTTGAGCACAGTGCAATGAAAAAGTAAAAGAGGCCAAATCTGTGG TGTGGTTTCTGCAACTCTCTCCAACTCTCCAACCATTTCCGTATGTGAACCAGGTAAAATTTTCTCTCTAATTTTCCTTC TTCTCCTGTTTGTTTCCCGAGAAAATCTCACCGCACACCAATTCACCATTGCTATTTTTCAGCATTTCTCCTAATTCCCT CTCCAACACTCACAAGCACAAATCATAGAAAATTTCAAACAATTTTCTCGGATTAACCGCTTTGAAATCTCACATGAAGC ACGTGTTGGATGAAACTAATGTGATTTTGTTTTCTTGCTTCATGTTTGTTTTATGAATTTGGTATTGAAGGGCGTGTTTG GTGATGTTCGATGTGGTTTTGTTTTTTGTTTTGTGTTTGCAGTTGTTGTTGTTGTTGTTGTTGTTTTTGTTGAAGAGTGG TGGTTTTTTGAAGCTGCAAAAATGAATGATGGTAGACCAATGGGGGTGCATTACATGGATGGTGGTGGCTTTCCTTATGC TGTGAATGAAAACTTTGTGGATTTCTATCAAGGCCACAACCAAATGCCAGTGAATTATGCATTTTCTGGGTCAATGCCTG AGCAGGTTTTATTTTGTCCTTTATGGTTTTGGCTTTTAGGTTGTAATTCTCATGCTACCCATGAATTGGAAATGTGTGTT GTTGCAGGAACTTACCAGATTTTTATCCTAAATTGATTTTCACCCCCATGTGTAGGAATATTAGGAGAAATGTCCATACT TTTATTATCGTTATCGTTGCTACTGCTACCTAACAGTTTAAGTAATAGAACTCTTAATGCTTGGCACAGGGTCTTGGAAG GTGTTTTTCTTTCTTTCTTTTATTAAAAGATTTGAACGCGAATAGGAAGGTTAAGAGCAAAAATGATGAGACAATCATGA TTACTTTTCTATATCGAATGTGTAATGTGCTGAGAGAAATTAGGTGCTGCAGTGCAGGAATGTCTCCCTTTAAGTCTTTA ACCCAATATATTTTTATTCTATTTTGAATGGGCTCATTCATCGATTTATCGAACTACATTGAAAACAAAAAAACTTCTCT TTAATTAACTCCTAGTTTACTGTCTGCTTTATGGTTTGTATGACTGTGGTACTGTGCTCTAATCAAACATGACCATATCA ATGTAATCAAATGTTCTGTCCAGGAAAGTGCCTACTGGTCAATGAACATGAATCCCTATAAATTTGGATTGTCTGGCCCT GGGAATACATCTTATTATAGTTCGTATGAGGTGAATGATCATTTGCCAAGAATGGAGATCAACAGGACTGATTGGGAATA CCCTTCGGTAATGATCACCGAGGAACCAGCTACAACGGATTCGCCAACTAGAAGAGATGGAACCACAAGCATGCAGACTA TCCCTGAAGAATGTTAGTTGAATTGTATTTTCTTTTACTGTAAGCATTGGCCTATGATCACATTGTTGATTTTTACAATA TGGTTGTTGTATCTTGATACACATGTTTAATCACTTTTTGGTGTCATGAAGCTAGCAGAAAACTATTGTCTGTGGAGATT CTGGGGGGAGGGGTTTTTGTCCGGTGGGATGAAGCTCTTTTCAATATAACTATGACTATTTGGATCGAATTGAAATTACT GTTCTAAATTGCAATTTTTCTAAAAAATATGAAAATTATATTATAGCATCTTTATTTTTTGGATTTCCCCTTTTATGTTT TTCACTCTTTTAAGTTGGTTTGAAAGTTGAAACTACTGCTTTAGTTTAAAATTATTGAGGATAGTTAGACAATCAAAATA TAGTATCTTAATTCTTTTGATTTTATTTTGCAGGCAGTCCAAATCATCATGAGTCCAGTAGTAGCCAGGTAAGAAGCCTT GTTTGTTATTAACAGGGCCTAAATTTTATATCTCAGTTAATTAATCTTTGGTTTGATAGTCAATCATTTGTCCCCCTGGT AGGAACACTGGGTCCCTATGCTTGAAACTTTGAAGACATAATATCAATGAAAATTAGCTGAACATGACATACTTTCATCA CTAATTGTCATCTATCCCCCCTAGGCCCCTACATTATTTTTTGGATAAAATAACTTTTTTATGAGTATGTTCATTAAAAT GAAAATTACTTGTTAAATAGTCCTGTGCAAATTAATTTGCCTAAACTTCCAGTATGCGACAAGATTCCTCTGTAGTTTTA ACTTTGTCAAATAATCTGCATATCCTCTTAGTTTGTGACCAATAACCCTTGTGGTATTATTAATTTTGGGGATTAATCAC ATGGGTTCATTTTCCATTTGTTGAAAGCTTAACTGGTTTAACTAGTACTGGATTTCAAAACACAGGATACTATTTTTACG AAAGTCATAGTTAGTCAGGAAGAGTGTATTTTAAGCATAAATGTTTATTTCGAAACTTATGGTACTGAAATCGAACCATG TCATTCAATTTAAGCAAAATCGAGGATTATATGTAGAACCGTCTCTTTTTAGCTTGTAGACTTGGTTGTAGGGCATAATT CTGATAGCTGCATAACATTATGATTAGCTCCTTTTGATGCAAAGAGTGGCCTTTAAATCAATATCCTTATTCATGTGATC TATATAACAGACAAAATAACTTCTTTTCATTGAGTATTCCATGCAACTTAGACTTACGTTTATTGGCCAAGAAACAAAAA AAGGAGTGTTGAAGTCAGGCATAAATTATTTTACAATATAACATTTCTTGTTAACCTTCTCTCATGCCTCTATCTTTCCT TCATAACCTAGGGATAATCATTAATAGATGACAATTGACATCAAATAGTATATTTGTTTTGGCAACTGGATTATTTTATG TATTACAAACTTGTTTACATGTGCAAGATTTTAGACGGGGTTTTCTTCAGAAAACATCTTTTCTCAATAGAACCTATAAT TCATTATCATGATTCACAAAACCATCCTCAAAGTTTTATGCTGGCAAAAACTGTTCCCAAACATATTTATGAATAAACTG AGAAGTGGGAATATCACGAACCCAGAAACACAAACAGAGAAACATGTGAAAGAGAGAGAGAGAGAAAAAGAACGAATCTT GATTGATTGAATATTAATCAGAAAAAGTAGAGAAATCTCCTCCAAGGGTTTCCCCTAACAATTGAGCCACTCCTATGTTT TCTCAATGCTTATTATTCTTCATGCCATTACTCTGTTGTAATTAACTGTTGATGTTTGGGACTCACTAAGGGGGAATGAA CAAAATTGAGAAATGTCGCTAGGTTAGTTGCAGCTCCTAACATACTCCATTTTTCTATAGAGTTCTGTTAATATCTATAT GCTTTTCAACTTGAAACTTGATAATGAGAAGCAGCATATAAATTTTTCAGTCTCTAATCATTTGTGTTGCATTGCTGCAG GTCATATGGCAAGACGACATTGATCCTGATAATATGACTTATGAGGTTTGAATATGATGGTCTTAATGTTTTACATGTAA ATTCTGATGTAGGAATGCATGTGTGTAGTTTCTTTTATTTTTTTCAAATTGTTTTACTTCTTTGAATAGCTGATTATTAT ATTAGTTATGGTTTACTAAACATCTGAAACAATTAATTCATGCTGATAGCGTTTATAGTTAGGTATTAAGATGATAAGTA GAGATTGGAGATTGTTTTGTAGGTTTGCGTTTTTGTAAATGTTCAATATTGTTTAACTAGAAACAACTCTCCCAAAAAGT TTAAGTTGGTTGATGGAAACTCAAATGATTTTATAGTAAACACAGGCTCTCCTACAAAGTCCATTAGACTTGAAGCTTGG AAAGCCTACATGCTCATTACCCTGTGCTTAAATTCAATTTTTATGTAGAATACGGACAACAATGATAGAGCACCTTAACA CTTTGTCTTATGAATCCTGATACCAGTTCAAGAACTAACTACCTCAAAAGATTATGCTGTTAGGTAAAGGCTTATGAATA GGTTTATATATTTTAAAGACTGTCAAAGCGTCAAACAGAAATGGTGCTTATTATGATATCAAATTTGATTTGAACAGTTA CTAAGCAAAAAAAGGGAATTTCCATCAAGATTTAGAATGTTTGCATTACATGAAAGAGCCGCATTGTGAAAGTTTCTAAT CTATTTGATGTTTGATGTTAGGTGTCTTCGAACTTAATGCTGATTTGTACTGTAACATGACCTTTCTATTTTATTGGTAT GTTGAATGAAGATCAATAGCGATTGATATGCCATATATGTATCAGGAACTACTGGACCTGGGAGAGGCAGTTGGAACTCA AAGCCGAGGTCTTTCCCAAGAACTTATTGATATGCTTCCAACCTCAAAGTACAAATTTAGTAGCTTATTCAAACGAAAAA ATTCTGAGAAAAGGTAATATCATGGGTTTCAACCTTTTTTTTCTGGAATAGATGAAATTGTTGGTAATAAATATGAGAAT GTGAATGAAGGCCAAAAGGGATCTTACACTGTTTAGGAATATGAGGTGAATGTGGAACACGAATGAAATCTTATATTTAA TCTTAGTAAGTCTTAATCATTCATCTTGTGGAAAGTAATGTATTGAAATATAGACTTTATGCCCGTAGTATTAATAGTTC AAGGGAAATTTAGTATATACTTTATGCCTGTAGTATTTATAGATTGTAGAATATCAATTGTAATTTCCCTTATTTCCATG ATCCCCAAATTTAGCAACCACCAAGTCGAGAAGAAAACTTCATTTGTTCTTCTACATTTTCAATTTCTCTTACTTTATTT CCTTCCTTCTTTCCCAACATCTTTGGAAATAGAATGGGTAATTATTATTTTTTGTACTGTGGTTGAAGATCTAAACAAAG TGTAGATAGTTAATTATGAATACTTGAGTTCTCGACTTATATGATACATCCCTTGCCCACGGAATTTGTTTCTAGTCTCT AGTTTTATATGTAGGACTTACATTGATCACTGAGGTTTTATTTTTTATTGTTTATCTTGGATAATTAGAACTTCTGTTTT CTAGATTTATAATTACGGATATTACCCTTTTCCCTGATTTCAGACTCCAACAATTCACCTTCCTATTTTCAGTATATACT TATAAGGAAACTGCATTGAAAACAGGTGTGTAATTTGTCAGATGACATATAGAAGAGGTGACCAGCAAATGAAATTGCCA TGCAACCATCTCTATCATGGTGAATGCATTACCAAATGGCTTAGCATTAACAAGGTGAATAAATGTGTTCTTCTCAAGTT CACTAGAATACTATGTCTATACAATCGTTTGTCGCTGATTCTCCATCTCATTTAACTTATTCTTTTCAGAAATGTCCTGT CTGCAACATTGAGGTTTTCGGTGAGGACTCAACGCAGTAGCAACAGCATGGCAAAAGGGAGCTTTCTTGCTCTGTCAATT TTTGCTCCTCATCCAGCTCTCTCTGTACCTCCCTTTTAGTTTTAATTTTAATTTCATACACTTAGGTAGGTGTAGTATGA AGAACAATGGCACTCCTTACATGATACATGTTTACTAGAAACAACTTGACACAGTCGCATCTTTTAGTGGTTAATGTGCG ATTTTGTGTATCCTTCCCTTAGCTTTGTGCCCCTTATATTGTTAGTTGGGATTGAGAAAACTGCTTCCCAGCCATTGATT AACATAGATGTGTTGGGATTTAGGAATGACAAATCTTATAAACATACTTGAATGCAAGGTAAGGCTGTCTACCCTTCCCT GGACACTGCCTGGGTGGGAGCTTTGTAGCACCAGGTTACCCTTAGATTCGTGTATACAACTGAACTCAGCGCCGTTGCAT GTTGGTCTTGATGTCCCTAATATTCACCTATTTGTCGTAGATCTTGAGATTGAAATCATGTTTAAGCTCCTAAAATCATT CAAAATATCAGCGTGTGAATGCTCATTTGTGAACACCATAATTGATTTTTTTCTGTCAAAATTAACTTAGGTGTTTGGAT GTTTTCACACAATTGATTCTAG
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0060600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAATGATGGTAGACCAATGGGGGTGCATTACATGGATGGTGGTGGCTTTCCTTATGCTGTGAATGAAAACTTTGTGGA TTTCTATCAAGGCCACAACCAAATGCCAGTGAATTATGCATTTTCTGGGTCAATGCCTGAGCAGGAAAGTGCCTACTGGT CAATGAACATGAATCCCTATAAATTTGGATTGTCTGGCCCTGGGAATACATCTTATTATAGTTCGTATGAGGTGAATGAT CATTTGCCAAGAATGGAGATCAACAGGACTGATTGGGAATACCCTTCGGTAATGATCACCGAGGAACCAGCTACAACGGA TTCGCCAACTAGAAGAGATGGAACCACAAGCATGCAGACTATCCCTGAAGAATGCAGTCCAAATCATCATGAGTCCAGTA GTAGCCAGGTCATATGGCAAGACGACATTGATCCTGATAATATGACTTATGAGGAACTACTGGACCTGGGAGAGGCAGTT GGAACTCAAAGCCGAGGTCTTTCCCAAGAACTTATTGATATGCTTCCAACCTCAAAGTACAAATTTAGTAGCTTATTCAA ACGAAAAAATTCTGAGAAAAGGTGTGTAATTTGTCAGATGACATATAGAAGAGGTGACCAGCAAATGAAATTGCCATGCA ACCATCTCTATCATGGTGAATGCATTACCAAATGGCTTAGCATTAACAAGAAATGTCCTGTCTGCAACATTGAGGTTTTC GGTGAGGACTCAACGCAGTAG
Download CDS Sequence

Protein sequence (LotjaGi3g1v0060600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MNDGRPMGVHYMDGGGFPYAVNENFVDFYQGHNQMPVNYAFSGSMPEQESAYWSMNMNPYKFGLSGPGNTSYYSSYEVND HLPRMEINRTDWEYPSVMITEEPATTDSPTRRDGTTSMQTIPEECSPNHHESSSSQVIWQDDIDPDNMTYEELLDLGEAV GTQSRGLSQELIDMLPTSKYKFSSLFKRKNSEKRCVICQMTYRRGDQQMKLPCNHLYHGECITKWLSINKKCPVCNIEVF GEDSTQ
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR46400:SF3
1 245 245 1.7E-134 –
PANTHER
PTHR46400
1 245 245 1.7E-134
IPR033276
MobiDBLite
mobidb-lite
103 136 34 - –
Gene3D
G3DSA:3.30.40.10
157 240 84 7.6E-19
IPR013083
SUPERFAMILY
SSF57850
194 240 47 1.32E-18 –
Pfam
PF13639
194 236 43 1.3E-11
IPR001841
SMART
SM00184
195 235 41 4.6E-5
IPR001841
ProSiteProfiles
PS50089
195 236 42 11.781
IPR001841

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004842
Molecular function Ubiquitin-protein transferase activity Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages.
Subterm of
GO:0016567
Biological process Protein ubiquitination The process in which one or more ubiquitin groups are added to a protein.
Subterm of
GO:0046621
Biological process Negative regulation of organ growth Any process that stops, prevents, or reduces the frequency, rate or extent of growth of an organ of an organism.
Subterm of
Negatively regulates

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0060600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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