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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0064500 |
| Transcript ID | LotjaGi3g1v0064500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb transcription factor; TAIR: AT3G60460.1 myb-like HTH transcriptional regulator family protein; Swiss-Prot: sp|A2WW87|GAM1_ORYSI Transcription factor GAMYB; TrEMBL-Plants: tr|A0A0L9VU96|A0A0L9VU96_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0064500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:6820433..6822422) extracted from Lotus japonicus Gifu genome v1.2.
GAAAAATCACAGTTAAATTTACTTTCTGTCGTGTTGGTCTTTCTGTGGAAAAAATGCATGGGAAGAAAGACCAAGAGCAT ATAAGGAAAGGGCCATGGAAAGCAGAAGAAGATGAAGTGCTGCTCAACCATGTCAAGAGGTATGGTCCAAGAGATTGGAG CTCCATTCGATCCAAAGGCCTTCTTCAAAGAACTGGCAAATCGTGCCGTCTTCGCTGGGTCAACAAGCTTCGACCCAACC TCAAGAAGTAAGTCAACATTACGTTGCGGTCACAATTGCAGTTACAGACGGCAATGGATCTCTAGTTGCTTGACGTTGCG GCTGCAATTGCTGTTACGGACTGCAATTTGAATCCCTGTGTTGCTTTTGCTTGATGTTTGTTTCTAGTGTCGGAATATTT GTGTTTACATCAGATGAAATTGTTTTGATGAGTCTTTTTATTTATCTCATATTTTGTTTTTTTGTTGATGAAAGTGGGTG CAAGTTTTCACTTGAGGAAGAGAGGGTGGTGATAGAGTTGCAGGCACAAATTGGGAACAAGTGGGCTAAGATTGCGTCCT ATTTGCCAGGGAGAACAGACAATGATGTGAAGAATTTCTGGAGCAGTAGGCAAAAGAGGTTGGCTAGGCTTCTGCAGACA TCAGCAACAACCTCCAAATCGCAGAAGAATAAAACTAAAGTTCCCACCATGCTTCATGTTCCAAATTTGGAGGTAAATAG AAACTGTTCCTCTGTTTCTGTGCATTTCTCACCCATTCTACTGTCTTCAGAATTCAGTTTTGAATACAAAAATTTCAAAC TTTATAAACTAGTTAAACTGAATTGAAAATTTGAAACACTACAACCAGTTTCAAGTTTGAGTTTTTTTTTTTTGTTTTTC TCAAGATGGTAAGATGCTATTTAACAATGCATATAGGCCATAGAGTGCATGGTCAACTTGGCCCTGAAAGATTTTCCTAT TGCAGTTTAGTCTCTCGAAGAAACAAATAAAAGTACCTGAATGTGTTAAATGTCAAATGTTGGTTCCTTTCAAATGTATT TCTTTCTTCAGCAAAATCTTTCAGGGACCAAGTTTTGACGATTCAGTCAAAACAAATTTCATAAACAAAACATAGCTGAA AATTTGATAGAAAAAAACTACTTCCAAGAACTTGTTTGTTTTGTTGAAAATAGTGGTCAATTCTTAATGCTACCCTATGC ACACTACCATTGCAGAAACCACAAATTCACATAAGTTCCTTGCTAAGAGAATACTGTAAATGACTTGAAAAATGAATAAA AATGTTCTTTGTGCAGAGTTTTTTATTTCACTACACAGTTTTTTCATGACTATAACACTATTTTGTTGACATGTATAGGC TCCTAAGTTCAGTTCTTCATCAGAGGGAGAACCATCATCAAAGCCTCAGTCATGTTCATTTTCTTTCATTGACAATTCTG AAGTTATCAAAATGATTCCACTACCAGATCTTATTCTAAAGTCCAATCAGCCTTTAAGTTCTGAGACAAGCCATGTTAAG CAAGAGTTCACCCCTTTTGATGAGAGTTGTTACAAAAGCACTGAACAAATCACCTTCCCCCAAATTTCAGAACTCCAAAC TGATCTCACATTCTCAATGGGAAGCCAAGATCTCTTAACCAGAATTGATGAGCCAAATTTTGGTGATGTGTTTGGCACTC TGGACTCATCTGAATTTGGATTGGGTCTTCAACACCCCATTGGGTTCCCTTTCTTTGATCCATCAGGAAGTTGCAGAATT GGGACAACAAGGGATACAATTGATCATAACTCCAAAAACAGTGGTAGCTTCTTTGATGATTTCCCAGAAGACATGTTTGA TCACATGGAAGCACCTGCAAGCCCATAAAAGTTCTGAGTATTGTGATCTTTATTATTTTATTGTTTGTATTTGTAGCTTG TTACATGCTTGGAATAGCAAGCTGAAAATTATATGAAAATTTGAAAATTTGCCTGTAATTGTAATTTGAC
CDS sequence (LotjaGi3g1v0064500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCATGGGAAGAAAGACCAAGAGCATATAAGGAAAGGGCCATGGAAAGCAGAAGAAGATGAAGTGCTGCTCAACCATGT CAAGAGGTATGGTCCAAGAGATTGGAGCTCCATTCGATCCAAAGGCCTTCTTCAAAGAACTGGCAAATCGTGCCGTCTTC GCTGGGTCAACAAGCTTCGACCCAACCTCAAGAATGGGTGCAAGTTTTCACTTGAGGAAGAGAGGGTGGTGATAGAGTTG CAGGCACAAATTGGGAACAAGTGGGCTAAGATTGCGTCCTATTTGCCAGGGAGAACAGACAATGATGTGAAGAATTTCTG GAGCAGTAGGCAAAAGAGGTTGGCTAGGCTTCTGCAGACATCAGCAACAACCTCCAAATCGCAGAAGAATAAAACTAAAG TTCCCACCATGCTTCATGTTCCAAATTTGGAGGCTCCTAAGTTCAGTTCTTCATCAGAGGGAGAACCATCATCAAAGCCT CAGTCATGTTCATTTTCTTTCATTGACAATTCTGAAGTTATCAAAATGATTCCACTACCAGATCTTATTCTAAAGTCCAA TCAGCCTTTAAGTTCTGAGACAAGCCATGTTAAGCAAGAGTTCACCCCTTTTGATGAGAGTTGTTACAAAAGCACTGAAC AAATCACCTTCCCCCAAATTTCAGAACTCCAAACTGATCTCACATTCTCAATGGGAAGCCAAGATCTCTTAACCAGAATT GATGAGCCAAATTTTGGTGATGTGTTTGGCACTCTGGACTCATCTGAATTTGGATTGGGTCTTCAACACCCCATTGGGTT CCCTTTCTTTGATCCATCAGGAAGTTGCAGAATTGGGACAACAAGGGATACAATTGATCATAACTCCAAAAACAGTGGTA GCTTCTTTGATGATTTCCCAGAAGACATGTTTGATCACATGGAAGCACCTGCAAGCCCATAA
Protein sequence (LotjaGi3g1v0064500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHGKKDQEHIRKGPWKAEEDEVLLNHVKRYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSLEEERVVIEL QAQIGNKWAKIASYLPGRTDNDVKNFWSSRQKRLARLLQTSATTSKSQKNKTKVPTMLHVPNLEAPKFSSSSEGEPSSKP QSCSFSFIDNSEVIKMIPLPDLILKSNQPLSSETSHVKQEFTPFDESCYKSTEQITFPQISELQTDLTFSMGSQDLLTRI DEPNFGDVFGTLDSSEFGLGLQHPIGFPFFDPSGSCRIGTTRDTIDHNSKNSGSFFDDFPEDMFDHMEAPASP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 5 | 310 | 306 | 4.0E-135 | ||
| PANTHER | 5 | 310 | 306 | 4.0E-135 | – | |
| ProSiteProfiles | 7 | 63 | 57 | 19.917 | ||
| Gene3D | 9 | 65 | 57 | 4.7E-19 | – | |
| SUPERFAMILY | 10 | 107 | 98 | 4.3E-28 | ||
| SMART | 11 | 61 | 51 | 2.4E-10 | ||
| CDD | 14 | 59 | 46 | 2.6173E-11 | ||
| Pfam | 15 | 74 | 60 | 1.1E-12 | – | |
| ProSiteProfiles | 64 | 115 | 52 | 17.089 | ||
| SMART | 65 | 113 | 49 | 2.4E-11 | ||
| Gene3D | 67 | 137 | 71 | 8.2E-16 | – | |
| CDD | 68 | 107 | 40 | 7.89003E-10 | ||
| MobiDBLite | 120 | 135 | 16 | - | – | |
| MobiDBLite | 120 | 139 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi3g1v0064500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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