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LotjaGi3g1v0065200.1

Overview

Field Value
Gene ID LotjaGi3g1v0065200
Transcript ID LotjaGi3g1v0065200.1
Lotus japonicus genome version Gifu v1.2
Description Homeobox associated leucine zipper protein; TAIR: AT3G60390.1 homeobox-leucine zipper protein 3; Swiss-Prot: sp|P46602|HAT3_ARATH Homeobox-leucine zipper protein HAT3; TrEMBL-Plants: tr|A0A151RB95|A0A151RB95_CAJCA Homeobox-leucine zipper protein HAT3; Found in the gene: LotjaGi3g1v0065200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:6876562..6880669) extracted from Lotus japonicus Gifu genome v1.2.

ATTCTCTCTCTCTCCCTCTCTATCTATCTCTTTCATCACTGTCCTCCATAGTATGTATCTATATATAGTCCCATCTATCC ACCATTCTTTTTACTGTTCTACAAAAAGCTAATAAAGAAGCCCTGTGATACCCACTGCCACCAAAGCAAAGCCCAACCCC ATTTCCTGCCCCCACTCCCCTTCTTAATACCATTTTGCCGTTTTCCTTTCACACTTTCCAAACCAAACAAGCCTTTCTTC TAGGTTTTGAGGGAAAATGGCTGGGAAAGATGATGATGGGTTGAGCTTAGGTTTGAGCTTGAGTTTAGGAAGTGGAAAAA ATGCTGCAAATAATAATGATAAAAATAATCAAACCCTTTTTCCCATGCACAAGCCTCCTCAATCCACCTCAAATCAAAGG GCTTCCTTCAATAACTTGTTCCCTTTTCATGGTATGTGATTCTTCTACATTTCTCTCTATGTGTTTTGTTTTTTGATTCC AAGTTTTGGTTTTTAGATTCCTGCAAATGTTTATTCAATCTTTCATGCAACAAGAAACAATTTCTACATTTGTCTCCATT TTATAATTTTTTTGGTTTAAAACTTTAAATCAAAAACCCTTTTCCCATTTTCATGGTATGTGATTCTACTTCATATTCCT TCCTTTTTCCTAACTTTTAATTCATTTTTTTTTGTTTTAAGATTCCTCAAATGTTTATCAAAATTTTCACCCAAACAAAA ACACCATTTCTAATTTTTTTTTGTTAGAACTGCAAAACAATTTCCCCTTTTTTTCAGTTTGCTAAATAAGTTGATGCAAA TCATGCAAAGAAGAACAAAACACAACCCATTTTTTAAATTTTTTCCTGTTTTTTTAATTTATTTTAAGAATCTAAGAACT GATTTGTACATAAATACCCTTCAATGCCATTCTTAATTACACGACTGCCACTGACACCTCACGTGCCAGATCGGAGCTCC GAGATGAGGTTGTTCCTCCGCGGAATAGACTCGAACTCACAACGGCCGTCGACGACCGTGGCGGTGCCGGCGGTGGCATG CGATGACGAGAACGGCGTTTCATCACCGAACAGCACGGTGTCGAGTATCAGCGGGAAGCGGAGCGAGAGAGAGGGCAACG GAGACGAGCACGAGGCCGCTGAGAGGGCGTCGTGTTCTCGGGGAAGCGAGGACGATGATGGCGGAGGCGGTGACGGCGAT GGTGACACTTCAAGGAAGAAGCTGAGGTTGTCGAAGGAGCAGGCTTTGGTGCTGGAAGAAACCTTCAAGGAACATAACAC CCTAAATCCAGTAAGTGGTTTATTCAATTGTAGGGTAAGGGTATAATTGGTATTTAGTGGAAATTATATTGAGCTTGTCT TTTATTCTTAAATATTCTTAAATGCTCAATTTACCAACTATGTCTTCTTCTAGTGGAAGAGGTTTTGGGTTCAATCCCTA AATTGTGTGTACGGAAAAAAAAAAAAAAAACACGGTTGGAAGGGGTCTCCACTTTGATGCACGATAGTATCTCGAGAGAT TAGTCGGACACCTATCGAGTCGGAGATACTTTTAGAAACCCAAAAAAAAAATGTTCAAATTATATTTTTAATAATAATTT GAGATTGATGGATATGCATTGTCGGTGTTGTTTTCGAGCTATAATTAAATGTTCCTACTGAACTAGATTATTGTTATTGA CTTTTATTTTTTCCTGCAGAAACAAAAGCAAGAATTGGCAAAGCAATTGAACCTGATGCCTAGACAGGTGGAGGTGTGGT TTCAAAACAGAAGGGCAAGGTGAGAATTCTCATTAATGTCTATATTCTTCTTCTAAGGGATATTTTTGACATTTTGATAG GAATATTTTGTTAAAATGAGACATTAAGAACATTTGGTCTTGTGGCATTGTTTATTGCCCCTGTAGTTTCTGTTGCATAC TCCATTGTGCTTGAATCTATTTAAAATGTTTTGTTGTTCCTCATCAATTTGTCGGTGCATGTTTGGAAATTCGTTTGGAA AAACGGTGTAAGCAAATTCATGGTAGTTAGAAGCTACTTCCTTTAGTTTTTGCTTCTGTCCACCATGATTTTGCCTTTGC CTTTGTTTGTTTTCGAACGACATTCCAAACATCACTTATTTTTCTTTGAAGCGGCTTCAAGAAAATAAGTAGTGGAATTT TGACCCATTTGAGAGTGATCAATAGGAATTTTCGAAGCAAGAAGGTGGCTCCATTAGTGTTCAACTGAATGCAATGAAAA TACAAACACAGCCTTATTAACATGCCAAAGTGCAACAAAGATTGATGTGGCTTTTTTTGTTTTTATTTGTGGGTGGGGTT GTATGTGTTGCTTGATGTCAGTGCTTCGGTTTAATTATTATTACTGCAGGACCAAGTTGAAGCAAACTGAAGTGGATTGT GAATACTTGAAGAGATGCTGTGAGAATCTAACTGAGGAGAATAGGAGGTTGCAAAAAGAAGTGCAAGAGCTTAGAGCTCT GAAATTATCCCCACAGCTCTACATGCAAATGAATCCTCCCACCACTCTTACCATGTGCCCTTCGTGTGAGCGTGTTGCTG TCTCATCTGCATCCTCATCCTCATCACCCAGCGTTCCCTCTGCCCCGGCTCCCGCTAATCGCAACCCCTTAGGCTCAAGC ATCCAGCGACCGGTACCTATCAACCCTTGGGCTGCAATGTCTATCCAACAACACCGTCCTCGACCATAATTGTTGACTCC TGACCCATTGTTAACTTCTAGGCCAGGACATTTTAGTTGTTAAGCAGAAATGAATCAATGCAATAGTGCAAGTAAGTGTT GATTTACCAATACTTGAGGTTATGACTTTCGTTAACTCTTCACTCTAGGCTTACTTTATTTTTGGCCTAGATTAAAACAT GTTTTAGTGAACTTTAGGATCTGTAAAGTTATGGACATGTGAAAGTAGGTTGTGTTTTCATATGCTGAATAGCTTTTGTT AACCTTGAAAAGATGAAAAAGAGAATCCGAATCTGTTTTTTTTATCTTTTCTTCTTTAGCTTCATAGGATTTGTCATACA ACTTGCTGGGAAAAGGTGGGATTTTGTGCTAGATTGGAGAGGGGACAAATTAAGGGGAGTCTCAATTAGAAATGATTTTT GTCCATCTTTTGTTTGGATTCTCAATCTGTTTGGTCGGCACACTTGAACATGGGTTGGGTGAGTCAGATTGTGGGCTCAA CTTTGGCTCCTTCTGTACATCATTCTCCTTAAGATGTGTATTTCCAATACCATGTAGCAAGAGCTGGCAGTGAACAAAGG TTATGTGGCAAGCACTAGTTACAGTGCCTTTGAAAGTTGAGATTGAAATGTTTGGATACCAGTGGGATCGGTGCTAACGG GCATTAACAATCACTTCGAAACAAAAAGTGAATGAAACTCTTCTTATGAATTGAGATGAATACACTCTTTGTGACTGGTA TTCAAATACACTAACAAGCACATCAAAAGGTAGGACGGGCGCCCATATTCAAGTTTAGCATTTTGGAACATTGGCCGATC CTGTTTTTTAATGTCTCTCTTTTCTTTTGATGAGCTAATTGGCTGAAATTGATTTAATTGTTTCGATTCATATTATATTT TATATCCAAAGATTAGTTAAAGAAAACTTATGTCTGAAGAATTATGCAACTTTGGACCAACTCCTTCATGGCGTCAATGA CAATTATGCTTCCTTGCTTGAATAAGGTTTTTTCCTAGGTTGATAGGAGTGTCAATTGAATCTTGGCATTTTCTGGAATC CAAATGCTCTTGCAATTCAATGAAAGCATTTTGTACCCACTTCACACGGTTGAGGTTGATCTCTTGGAAAGACACCTCTA ACTAAACCCAATTCTTCTAGGCACTGCACTCATTGTGGATGCTCCAATCAGATGGTGAAACATGCCTTTTGTGTCAGATT TCCACCTGGCTACAAATTAAGAAAATATGTTAACCATGTTGCCATTTAACAGGGCGAGCATATTCCATCTGCTCTTATTG AATCCCCTTTGTTACGTTTAACAATAGAACAAATTGAAGGCTTGCTGGCAGTGCCTACTCCAAGTTATGATGCAGTTCAG TCTACTCCAGTTGTTGCTTCACTTTGGC
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0065200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTGGGAAAGATGATGATGGGTTGAGCTTAGGTTTGAGCTTGAGTTTAGGAAGTGGAAAAAATGCTGCAAATAATAA TGATAAAAATAATCAAACCCTTTTTCCCATGCACAAGCCTCCTCAATCCACCTCAAATCAAAGGGCTTCCTTCAATAACT TGTTCCCTTTTCATGATCGGAGCTCCGAGATGAGGTTGTTCCTCCGCGGAATAGACTCGAACTCACAACGGCCGTCGACG ACCGTGGCGGTGCCGGCGGTGGCATGCGATGACGAGAACGGCGTTTCATCACCGAACAGCACGGTGTCGAGTATCAGCGG GAAGCGGAGCGAGAGAGAGGGCAACGGAGACGAGCACGAGGCCGCTGAGAGGGCGTCGTGTTCTCGGGGAAGCGAGGACG ATGATGGCGGAGGCGGTGACGGCGATGGTGACACTTCAAGGAAGAAGCTGAGGTTGTCGAAGGAGCAGGCTTTGGTGCTG GAAGAAACCTTCAAGGAACATAACACCCTAAATCCAAAACAAAAGCAAGAATTGGCAAAGCAATTGAACCTGATGCCTAG ACAGGTGGAGGTGTGGTTTCAAAACAGAAGGGCAAGGACCAAGTTGAAGCAAACTGAAGTGGATTGTGAATACTTGAAGA GATGCTGTGAGAATCTAACTGAGGAGAATAGGAGGTTGCAAAAAGAAGTGCAAGAGCTTAGAGCTCTGAAATTATCCCCA CAGCTCTACATGCAAATGAATCCTCCCACCACTCTTACCATGTGCCCTTCGTGTGAGCGTGTTGCTGTCTCATCTGCATC CTCATCCTCATCACCCAGCGTTCCCTCTGCCCCGGCTCCCGCTAATCGCAACCCCTTAGGCTCAAGCATCCAGCGACCGG TACCTATCAACCCTTGGGCTGCAATGTCTATCCAACAACACCGTCCTCGACCATAA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0065200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAGKDDDGLSLGLSLSLGSGKNAANNNDKNNQTLFPMHKPPQSTSNQRASFNNLFPFHDRSSEMRLFLRGIDSNSQRPST TVAVPAVACDDENGVSSPNSTVSSISGKRSEREGNGDEHEAAERASCSRGSEDDDGGGGDGDGDTSRKKLRLSKEQALVL EETFKEHNTLNPKQKQELAKQLNLMPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELRALKLSP QLYMQMNPPTTLTMCPSCERVAVSSASSSSSPSVPSAPAPANRNPLGSSIQRPVPINPWAAMSIQQHRPRP
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 49 49 - –
PANTHER
PTHR45714:SF11
2 304 303 6.5E-129 –
Pfam
PF04618
2 113 112 1.1E-26
IPR006712
PANTHER
PTHR45714
2 304 303 6.5E-129 –
MobiDBLite
mobidb-lite
15 49 35 - –
MobiDBLite
mobidb-lite
88 149 62 - –
MobiDBLite
mobidb-lite
93 109 17 - –
MobiDBLite
mobidb-lite
110 149 40 - –
Gene3D
G3DSA:1.10.10.60
119 202 84 4.2E-19 –
SUPERFAMILY
SSF46689
130 204 75 1.37E-19
IPR009057
ProSiteProfiles
PS50071
143 203 61 17.961
IPR001356
SMART
SM00389
145 207 63 6.6E-17
IPR001356
CDD
cd00086
147 204 58 1.95154E-15
IPR001356
Pfam
PF00046
147 201 55 4.9E-17
IPR001356
ProSitePatterns
PS00027
178 201 24 -
IPR017970
Pfam
PF02183
203 237 35 7.7E-11
IPR003106
SMART
SM00340
203 246 44 9.1E-27
IPR003106
Coils
Coil
209 239 31 - –
MobiDBLite
mobidb-lite
265 291 27 - –
MobiDBLite
mobidb-lite
265 311 47 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0005634
Cellular component Nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0043565
Molecular function Sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0065200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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