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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0066700 |
| Transcript ID | LotjaGi3g1v0066700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT3G24000.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein At3g24000, mitochondrial; TrEMBL-Plants: tr|A0A0R0JV25|A0A0R0JV25_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0066700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:7159215..7161928) extracted from Lotus japonicus Gifu genome v1.2.
CGAATAGAGACCTGCATTTTTAAATTGTTCAAGTTCCTATCCCACACATAACTGTCTCTCTTAACCTCGATTGATCATCA ATTTTTTTTTGTTTCATACATAATTACATGTATTATGTATGTATGTATGTATCCTATAACTACAAGAGTTAAACTTGTCC AACGCCATTCTGTTACCCTTCGCAGGCTTTGGCAAACTGCAATCTCAGACGACAATGACAATGTTCCTGAGCTTGACAAG TCTTATTACATCATAGACGACAGGAACCTACTCCGTCGCAGTAAAACTGGCCTTCACGTTCTGGATCTCATCGACCGCGG TGCCGTCGAACCGGACCGAGCATTGTACCAGAGGCTATTGAAAACATGCACCAAGTTGGGGAAGCTCAGAGAAGGAAGGC TAGTACATTCCCATTTCCTGCTACAAAATCCCGACGTAAGAGATGATCTCGTTATTCAAAACTCAGTTCTCTTCATGTAC GCGAGGTGCGGGGATTTGGAACACGCGCGCCAAGTGTTTGATGAAATGCCTAACAAGGACACGGTCACGTGGACCTCCAT GATCACCGGGTATGCTCAGAACGAGCGCGCTGTGGACGCACTCGTCTTGTTCCCGGACATGCTCCGTGGTGGGAGTGGGA GCAGGCCGAATGAGTTCACGTTGTCGAGCTTGGTGAAGTGTTGTGGGTTGATACCGAGCTATGGTGATGGGAGGCAGGTT CATGGGTGTTGTTGGAAGCACGGGTTTTGTGATAATGTGTTTGTGGGGAGCTCGCTGGTGGACATGTATGCGAGGTGCGG GTTTTTGGGTGAGGCGCAGGCGGTTTTTGATGAGCTGGGGAGGTGGAAGAATGAGGTTTCTTGGAATGCTTTGATTGCTG GGTATGCGAGGAAGGGTGAGGGAGGAGGAGAGGAAGCTCTTGGTCTGTTTGCCAAGATGCAGAGGGAAGGTTATGGAGTG ACAGAGTTCACCTATTCCGCTCTTTTGTGTTCCGCTTCCAGCGTCGGGTCTTTGGAGCAAGGGAAATGGCTTCATGGACA CATGTTAAAGTCAGGGAGGAAGCTGGTTGGTTATGTGGGGAACACCCTTCTTCACATGTATGCAAAGTCAGGTAGCATTT CGGATGCGAGGAAGGTTTTTGATCGGTTGGTGAAGGTTGATGTCGTTTCTTGCAATTCCATGCTGATTGGTTATGCTCAA CATGGGTTTGGAAAGGAAGCTGTGGTGCTTTTCAAACAGATGCTAAGGGATGGGATTGAACCCAATGACATAACATTCTT GTCTCTTCTTACTGCTTGTAGCCATGCTGGACTCTTGGATGAGGGTGAACGATATTTTCAATTGATGAGGCAGTTTGGTG TTGAACCTAAAGTTTCACATTACGCGAAAATTGTTGATCTTCTCGGTCGAGCTGGCCTTCTTGATCGAGCTATGAGTTTC ATAGAGGGAATGCTGATTGAACCCACTGCAGCTATCTGGGGAGCTCTGCTTGGTGCTTCTTGGATGCATAAAAAAATTGA AATGGGTGCTTATGCTGCTCAAAAGGTTTTTGAGCTTGATCCTTTCTATTCAGGGGCACATGTGTTGCTTGCCAATATTT ATGCCTCTGCTGGGAGATGGAAGGAAGCTGCGAATATCCGGAAGATGATGAAAGATAGTGGGTTGAAGAAGGAACCAGCT TGTAGTTGGGTTGAGATTGAGAACTCTGTCCATGTGTTTGTGTCAAATGACATTGCTCATCCACAAAAAGATAAGATCAT TAAAATGTGGGAGAAGCTAAATCAGGAAATTAAAGAGATTGGCTATGTTCCTGACACTAGACATGTGCTTCTGTTTGTGG ACCAACACGAGAAGGAGTTGAATTTGCAGTATCATAGTGAGAAGCTGGCTCTTGCTTTTGCTCTTCTGAATACTTCCCCA GGATCCACCATTCGCATTATGAAGAACATTAGAGTTTGTGGTGATTGCCACTCAGCAATGAAATATGTGTCACTGATAGT GAAGAGAGAAATAATAGTTAGAGATACCAATCGCTTCCATCACTTTTGTGATGGCTTCTGCTCTTGCGGAGACTACTGGT AGTGCCAATTATTATCAACTAATCATGGAGTGGTATTAAGGGATAGTTGTTGTTCCTAATATTATCCAGTCATTCTGTGA TTCAACTTTAGTTGATTTTGCAACATTCTATCAGCAAAATGGCATTATTTGATCTGAAGTTATCCATGGCATTCTTTAGT TAAATGCAGTTTTTGTTCAAGGAAACTACTAAGATGCTACGAGTGCCATTGGATTCCAATCACGGAGGCTGAAAAGACCA AAGTAAAGTCACATAACTTGGCATTGAATAGCCCAATGTTAGCAACGTGTTGTGTTAGAAGTCTTAGGTAAAAAAGTATG CATTTCCAAAGGAGGATTCTTCTGTTTCCCAATGGTAAAAAGATAGACTAGAGCCATTACAGCTATTGGCTAGCCTGAGT TTGGTTTAGTTTAGGTACTAGAATTATTATCACGAAGGAATAAACGAGCCTGCTAAATGGGATACTAAAAAGAACTGAAC TGATCTTAACTTATGTTGTAGAAAAATGACTACTAGTTTTCTACCACTTTCTATCACAAGATAAATAACCTAATGCAAAA AATGGGTTGGGAACTTGGGATGTTGTTTCTGATATAGTGAAAGAAGCAGGTTGTGGTTTAATTGATAAGTCAGC
CDS sequence (LotjaGi3g1v0066700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTATGTATGTATGTATCCTATAACTACAAGAGTTAAACTTGTCCAACGCCATTCTGTTACCCTTCGCAGGCTTTGGCA AACTGCAATCTCAGACGACAATGACAATGTTCCTGAGCTTGACAAGTCTTATTACATCATAGACGACAGGAACCTACTCC GTCGCAGTAAAACTGGCCTTCACGTTCTGGATCTCATCGACCGCGGTGCCGTCGAACCGGACCGAGCATTGTACCAGAGG CTATTGAAAACATGCACCAAGTTGGGGAAGCTCAGAGAAGGAAGGCTAGTACATTCCCATTTCCTGCTACAAAATCCCGA CGTAAGAGATGATCTCGTTATTCAAAACTCAGTTCTCTTCATGTACGCGAGGTGCGGGGATTTGGAACACGCGCGCCAAG TGTTTGATGAAATGCCTAACAAGGACACGGTCACGTGGACCTCCATGATCACCGGGTATGCTCAGAACGAGCGCGCTGTG GACGCACTCGTCTTGTTCCCGGACATGCTCCGTGGTGGGAGTGGGAGCAGGCCGAATGAGTTCACGTTGTCGAGCTTGGT GAAGTGTTGTGGGTTGATACCGAGCTATGGTGATGGGAGGCAGGTTCATGGGTGTTGTTGGAAGCACGGGTTTTGTGATA ATGTGTTTGTGGGGAGCTCGCTGGTGGACATGTATGCGAGGTGCGGGTTTTTGGGTGAGGCGCAGGCGGTTTTTGATGAG CTGGGGAGGTGGAAGAATGAGGTTTCTTGGAATGCTTTGATTGCTGGGTATGCGAGGAAGGGTGAGGGAGGAGGAGAGGA AGCTCTTGGTCTGTTTGCCAAGATGCAGAGGGAAGGTTATGGAGTGACAGAGTTCACCTATTCCGCTCTTTTGTGTTCCG CTTCCAGCGTCGGGTCTTTGGAGCAAGGGAAATGGCTTCATGGACACATGTTAAAGTCAGGGAGGAAGCTGGTTGGTTAT GTGGGGAACACCCTTCTTCACATGTATGCAAAGTCAGGTAGCATTTCGGATGCGAGGAAGGTTTTTGATCGGTTGGTGAA GGTTGATGTCGTTTCTTGCAATTCCATGCTGATTGGTTATGCTCAACATGGGTTTGGAAAGGAAGCTGTGGTGCTTTTCA AACAGATGCTAAGGGATGGGATTGAACCCAATGACATAACATTCTTGTCTCTTCTTACTGCTTGTAGCCATGCTGGACTC TTGGATGAGGGTGAACGATATTTTCAATTGATGAGGCAGTTTGGTGTTGAACCTAAAGTTTCACATTACGCGAAAATTGT TGATCTTCTCGGTCGAGCTGGCCTTCTTGATCGAGCTATGAGTTTCATAGAGGGAATGCTGATTGAACCCACTGCAGCTA TCTGGGGAGCTCTGCTTGGTGCTTCTTGGATGCATAAAAAAATTGAAATGGGTGCTTATGCTGCTCAAAAGGTTTTTGAG CTTGATCCTTTCTATTCAGGGGCACATGTGTTGCTTGCCAATATTTATGCCTCTGCTGGGAGATGGAAGGAAGCTGCGAA TATCCGGAAGATGATGAAAGATAGTGGGTTGAAGAAGGAACCAGCTTGTAGTTGGGTTGAGATTGAGAACTCTGTCCATG TGTTTGTGTCAAATGACATTGCTCATCCACAAAAAGATAAGATCATTAAAATGTGGGAGAAGCTAAATCAGGAAATTAAA GAGATTGGCTATGTTCCTGACACTAGACATGTGCTTCTGTTTGTGGACCAACACGAGAAGGAGTTGAATTTGCAGTATCA TAGTGAGAAGCTGGCTCTTGCTTTTGCTCTTCTGAATACTTCCCCAGGATCCACCATTCGCATTATGAAGAACATTAGAG TTTGTGGTGATTGCCACTCAGCAATGAAATATGTGTCACTGATAGTGAAGAGAGAAATAATAGTTAGAGATACCAATCGC TTCCATCACTTTTGTGATGGCTTCTGCTCTTGCGGAGACTACTGGTAG
Protein sequence (LotjaGi3g1v0066700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYVCMYPITTRVKLVQRHSVTLRRLWQTAISDDNDNVPELDKSYYIIDDRNLLRRSKTGLHVLDLIDRGAVEPDRALYQR LLKTCTKLGKLREGRLVHSHFLLQNPDVRDDLVIQNSVLFMYARCGDLEHARQVFDEMPNKDTVTWTSMITGYAQNERAV DALVLFPDMLRGGSGSRPNEFTLSSLVKCCGLIPSYGDGRQVHGCCWKHGFCDNVFVGSSLVDMYARCGFLGEAQAVFDE LGRWKNEVSWNALIAGYARKGEGGGEEALGLFAKMQREGYGVTEFTYSALLCSASSVGSLEQGKWLHGHMLKSGRKLVGY VGNTLLHMYAKSGSISDARKVFDRLVKVDVVSCNSMLIGYAQHGFGKEAVVLFKQMLRDGIEPNDITFLSLLTACSHAGL LDEGERYFQLMRQFGVEPKVSHYAKIVDLLGRAGLLDRAMSFIEGMLIEPTAAIWGALLGASWMHKKIEMGAYAAQKVFE LDPFYSGAHVLLANIYASAGRWKEAANIRKMMKDSGLKKEPACSWVEIENSVHVFVSNDIAHPQKDKIIKMWEKLNQEIK EIGYVPDTRHVLLFVDQHEKELNLQYHSEKLALAFALLNTSPGSTIRIMKNIRVCGDCHSAMKYVSLIVKREIIVRDTNR FHHFCDGFCSCGDYW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 54 | 194 | 141 | 7.7E-25 | ||
| PANTHER | 62 | 190 | 129 | 1.7E-103 | – | |
| ProSiteProfiles | 74 | 108 | 35 | 5.755 | ||
| ProSiteProfiles | 111 | 141 | 31 | 9.142 | ||
| TIGRFAM | 114 | 141 | 28 | 8.1E-4 | ||
| Pfam | 141 | 190 | 50 | 2.3E-9 | ||
| ProSiteProfiles | 142 | 176 | 35 | 9.712 | ||
| PANTHER | 182 | 310 | 129 | 1.7E-103 | – | |
| Gene3D | 195 | 317 | 123 | 2.5E-20 | ||
| ProSiteProfiles | 214 | 244 | 31 | 7.366 | ||
| Pfam | 219 | 241 | 23 | 0.12 | ||
| Pfam | 245 | 291 | 47 | 1.9E-9 | ||
| ProSiteProfiles | 246 | 282 | 37 | 10.698 | ||
| TIGRFAM | 248 | 280 | 33 | 5.0E-4 | ||
| ProSiteProfiles | 283 | 317 | 35 | 8.122 | ||
| SUPERFAMILY | 294 | 510 | 217 | 7.32E-8 | ||
| PANTHER | 301 | 513 | 213 | 1.7E-103 | – | |
| ProSiteProfiles | 318 | 348 | 31 | 6.928 | ||
| TIGRFAM | 323 | 349 | 27 | 0.0013 | ||
| Pfam | 323 | 347 | 25 | 0.014 | ||
| Gene3D | 323 | 589 | 267 | 4.1E-38 | ||
| ProSiteProfiles | 349 | 383 | 35 | 12.123 | ||
| Pfam | 349 | 396 | 48 | 6.6E-12 | ||
| TIGRFAM | 351 | 384 | 34 | 1.1E-7 | ||
| ProSiteProfiles | 384 | 418 | 35 | 10.961 | ||
| TIGRFAM | 386 | 418 | 33 | 4.6E-5 | ||
| ProSiteProfiles | 419 | 453 | 35 | 6.292 | ||
| ProSiteProfiles | 485 | 519 | 35 | 7.476 | ||
| Pfam | 492 | 517 | 26 | 0.14 | ||
| Pfam | 521 | 644 | 124 | 4.1E-39 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi3g1v0066700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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