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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0068700 |
| Transcript ID | LotjaGi3g1v0068700.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tryptophan-tRNA ligase; TAIR: AT3G04600.1 Nucleotidylyl transferase superfamily protein; Swiss-Prot: sp|Q9SR15|SYWC_ARATH Tryptophan--tRNA ligase, cytoplasmic; TrEMBL-Plants: tr|A0A1J7GMT2|A0A1J7GMT2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0068700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:7496497..7503775) extracted from Lotus japonicus Gifu genome v1.2.
CAACTTCCGCCGGCAAACGCCGACGCTCGTGTAGAAATGGCGGCGCCATCAGAGACGAAGAAGGAAGAAGAGGAGCAAGT GGTGAATCCATGGGAGGTTTCAGCCAAGGACGGTGGCAAGATCGATTACGACAAGCTCATCGACCGTTTCGGATGCCAAA GGCTCGACCAATCCCTCATCCAACGCTTCGAGCGACTCACCTCTCAGCCTGCTCACGTATTCCTCCGCCGCGGCGTTTTC TTCGCTCACCGGTACCCAATTTTTCCACTCTTCATCTTCGTGTGTGTGTGTGTGTGTTTGAACTTGCAATTCAGTGTCTG TTTCGTTTTTGTATTGCAGTGATTTTACAGATATTTTGGACGCTTATGAAAAGGGTGATAGGTTTTACTTGTATACCGGT CGAGGACCGTCTTCCGAAGCTTTGCATTTGGGACATTTGATTCCATTCATGTTCACCAAGTGAGTGTATTTTGATTTTTT AGAAAATCACAAAATTGATGGAAATTTTTGAATCTGGTGTGTCATTTATCCAGTTATTAGTTCAAGAGTGCTAGGAACTA TGTGTTGGTATAAGTGGAAGGGGCTCGGGTCTCTTAGGCTATGTTTGGATTGATGGTAACTTTGTTCCGTTCCATCATAT AATACCCAAACAATGGAATGTGGTTTTCATTTCATTCCACCCCGCTCCCTTCGGTTCCATTATATTCCATTTCGCTCTGC TCCATTATGTTCCGTCAATCCAAACATAGCCATGTGGTCTTGGGTTCGATACCTATATCCATGAGTATGGAAAAAAAAAC CTGGTTGGGAGGGTCCCCACTTTGGTGCCTGACAGTACCCTGGGAGATTAGTCTCTCACCTCTCTCAATTGATAGGTGAG AGGATACTCTGCGCAGCTGGAAAAAAGTTCGAGAGTGCATTTTTAAAAATGATCTGCAAGTTCTTTTGAAATTTATCGCA TTAAAACAGCTCTAAATAACTTTTCAATATTTTTTTAAATAAATCTAAACACAAATAGTTCGTGTTCTACAAAAAAAGCT ATGTAAAACAGAAGTAAAAGAAAGAACTTTGTTGTATAATCATCAAATCATTCTTTTTAATAGTGTAAACCAAACCGGCA CTAAATTTGTTCTGCCGTGAGTGTTAAAGTTTTGTACTATGATTTAATTCAATGATGTGTTTCTGCATTATTAAGGATGT GAATTCTGATGTATTACTAGCTTTTATGATGATGCATTTGTAAGTGCAATTTGGAACAAGAGGAACCGCTTTTCCATGTC ATGTCTACCACCTCAGTTATTATTTCCCATTCAAGTGTAGTTCTATTGTGATAGCTATTTTGGTACAGATTGCACAGTAT TGAGATTAGTCTTTAGCATTAAATGTAGCATGCGTAAATGATAGGTTAAAGGAGTTTTGTAGTAATGGTTGATCATTATT AGATACCTCAACTATAGGTGAACCATGGAAATAAAGCTAAGTTCTGAATTGTTATGATTGATTGGGATGTTTGTTAACGG CTTGACATGTTAGAAAATGGCGTGTAGGTATTTGCAAGATACCTTTAAGGTTCCTCTGGTTATACAGCTCACTGATGATG AGAAGTTCTTGTGGAAAAATCTTACTATCGAGGAGAGCCAAAGACTTGCACGGGAGAACGCAAAGGACATCATTGCTTGT GGTTTTGACATTTCAAAGACATTTATCTTCTCTGATTTCAGTTATGTCGGTAGGTAAGTGAATTATAAATGCAGGTTTTC GTTAAAAGTATATTTTTCAAGTATGCTTTCCTACCATGTCTTGCGATTTTGTAAAATATTGGATTAGTTAGGGTTTCAGA ATTTTTTAAAGAATGTTCATTTATACATCACTAGAAATTAGATGTTAATAAGGAGCTAAATTTAAATCCTACATTCTAAA AGCACCTTAAATATTGAAATGGTGAAAGAAAAAAGTTTCATGCTACCTATACGATCACATCAATTGACCTATGTCATGAA TATTCACAAAAGTTGTTTTGCCTAGGTTGTCAACTGCCTAAAATTACCTTCCTCTTTTTCTGGGTGTGGGACCAACTAAT GCAACTGAACTTTGGCATACAGTTTCATGCTTTCTTCATGATTGATTTTCCTTCGTACTTTCTTTGTTTAATAACCAGCT AAAATAAAAACAAATATCTTGAAGCCTATGCATTTCGTGGTTAAGCTCAAGCAATATTCTCCACTGTGGTAAATATATTT GGTTTACAAAAATTACTTGAATCTCAGGGCGCTTTTCTCTTTTGAGTCTTCCAGATTCCAGAACATTTTACAGTATTTCT TTACAAGATGATGTTCTTTCTTTCCCACGAAAACTTCTAGTGGCCGTTATTAATGTTTCTCGGCCCCATACTTAAAAATC AGGAGGAATTGTTAAAATTAATTTTGGGCTTTGGGCTTATATTACACCCTACATAATTGGGGAAAAAAACTGAGTAATCC AAACTTCATTGATGTTTCTGTTCAATTATTGTTAAGAAATTTCCCATTTCATGTTCTGTTTTATCCAAACTTCTTCTATA TACAAGTAAAATCTTCTGCTATTCCAGTGCCTTCTACAAGAACATGATGGAGATTGCAAAGCGTGTGACTTATAACCAGG CTGTTGGTATTTTTGGTTTCACTGGGGAAGATCATATTGGAAAAGTTAGTTTTCCACCTGTGCAGGTAAGGTCCATTTCC TCCCCACCTAGAATGTGCGTGTCAGTGTATATTTCCACTATATTAACTTTTGGCTTTATTGTTGCTGTAGACTTACTCTT TTAGTGTTTTTTCCTAAGGCACTTCATATTCTTTTTTGCCAATATATTATGATGATATTATATTGTTCTAAAATGTTGTA TTTAGCTGCAAGTTCTCTTTAGGCAGCTTTCTTTACTGGTTAATTGTATCATTCGTCTGATTAAGCTGTGCAGTTGTTAT TGCCATCACTATCTGAAGTTTCCATCATCATCTTTGACATTAAAATACATGTAGAATTGTAGATAAGACTAGACTGTACT ATATAATTATATGGTGTATGTGTCTGAGTGTATGTATTTATGTATGCTTGAAGTTATAAATGGGTTACGATTCATTAAAA CCACTGTTCAATAAATTCATACAAAATGTGAATTTACTATTCAACCATTTAATTGTGACATATTATCAAGTTCATAATTT ATTCTCAGTTCTAGTAATTTGGTTATTGGTAAGTCAAAATAAAGTAGTAAGCAATTCTTATATTTTAGAAATTATATTGC ATATCTAACTTATGGCCTTATGGGATAATAAAATAGTATAAAGTAACTTCTAGTCACCATTGAAGTTTATGGTCATGAGA TAGATCTACATCTACTACATTATGTGAAGTACATCCAATGGTGGGTTTGTAAAAAGTTTGTCCTTATTAAGTTATTTTGT GGTGTTGATATAGTGTAACTTGTCAATTAGTCTGAATGGGTTCAAATCTACGGAGTATATGCGTATATTTGTGTCTGTTT GTGTGTGTGTAATGCATTGTATTAGTTGCTTTTTCTGATCCTATTCATTTATTAATGATATATATTATGAAGTCATTACT TGGAAATGATTGTTTGTGCTTCATTTGCCTATGCAGGCAGCTCCATCATTTCCGAGTTCATTTCCTCACCTATTTTCTGG CAAAGAAAAACTCCGTTGTTTGATTCCTTGTGCAATTGACCAGGTATAGTCTTTGATTATTTTAAATGCAAGTTTTCAGG TTGATTTCATTTGAACTTTAACCTTTATGACAATGGTGATATGTGATTCCTTTGTTTCGGTAAACTTCCTTAATCATTTT TGGGGTCTGAATTATGTTCAAAATTCTCTTCATATGTATAGATATCAAGAGGAAAGGAAAGTCATAAAAATATCTATTCC AAATATTTTCATTTCTTCTCCTAGCCTTACATGTTATATAACTTCACTGTATCGTTAGATAAGGATCAGATTGAGTCATT TTTTGTCACTGAAAATTTCATTTGCTGGTGTAGTGAAAAATATGTTCCTTCTTGAATAGTTACTATATATTAACTGATGG CATATCTGGTTGAATGAGTTACATTCTGACCGTGATGAAAATCTCTACAAAAGTGTGTTATTGATCTCTTCGTTTGAGGA TAGCATGCTGGGAACTAGAGCTTGTGATACTCCAACGTTTCCAAATGTGAAACTCCCTCGAAATGATGGACAACTATTAT GTGATCTACATATGTATGTAGAGTTGGTTGGCAAACTTAACTATCTTATTATCACAGGTCTAGACATTTCTTTCTCCCAG CAGGTGTAGTTAGTTAATACATGTCATATCCACAAGATTATCATTGGGATGTATTGTTGCACATCTTGAGGTATTCGAAA GGAGCTCCAAGTCATGGGATTATTTATAAGGACAACTTGCACATTAAAGTAGAAGGTTATTTTGATGTAAATTGGCAGAA ATTTGAGAATCAACCTCTACTGTGATCCTTGGCAGATATTTGGTTCTTGGAAGTTCGGAAAGTAAGAAACAAACGTAGTA GGATGTTAGGAGTTGGATTTGGGTTTTAAGGGATTACTTTTGTGTTGTATAACTTGGGAGAAAAAAGATTTTAATTGTAA AGAAAAGAAATATACGTACAACATGGGGGAGGATGTGAAATTTTTCAAAACAAAAAAAGCAAGGAAAAGAGAAAATCAAG ATTGTACATAGCGCCGGACTCATGAGAAAGGACGTGTGGGACTTAGAAGTTAGAATCCGCAACATGTCTTCTTCACATAT GGGGTTGTCAAGAAGAAACTTCTTCCTGTGAGGAGAATGACAATAACTGAAAATATCAAAATAAGACTTTAATAGAAAGC ACTTGAATGGTCTGAATATTCCTATCTTGACTGGAACATAGTTTACCCGTAGATTTTTGCATAATCAGAACCAGCTTGTC TCTCAGGTTCCCCTGGGAAATCCAGAATCCCAGAGAGTAAAGACCTTTGGATGAGTGACTTATGTAAAAATAATTACAGT GGTGATGAAAGCCTCTGAAAATTTCAATAATTGGTTATATTATGAGATAACCTTTATTAATTTATTATGACCTTTTATAT TGCACCTAGCACACTACTCTGTCTCTTCCTCTCATTTTTGTTATTCTTTAGACAAAAGAAAACTTCTATAAAAGATAAGG TATCCTCCACAAACAGCCTTAAACAAGTTTAGAAAAAAAGGGGAAAATATATCGTCTCGAGCTTCTGTATGTCCTTTTCA TGGGTTACGTTTTCTTGAAATAAATCATTCATGCTCTATACTTATATGCAACCTGATATTTTTGCCCTTTTTTCTAATAC CGTTTATGTGGACAAACCATTCTTATTCTTAGTATTGTCTGTAGTATATGATGCATTTGTGTTTTATAATTTACCCATTG TTTTGTCATAGAATTCCTTTATGATTTTTTCAGGATCCTTATTTTAGAATGACACGAGATGTTGCTCCTAAACTACAATA TAACAAACCGGCCTTGATTGAATCAACATTCTTCCCTGCATTACAGGTATTCTCATGTTGCAAAACAATGCTAATTTATA GAATTGATGAAGGGAAACTAATATTGAACCTATTCTTGTATATGTTCGGCCCTTGCATTTGCTTGTATATATGCTATTGC TATATGTCTCTGTGCATGTTCTGATAAAATAATGTTAAGTTGCTTGTTGCCAACTTATGAAAGCTGTTACATTTGTTCAT TTAGTAAAATTTCTTTTCTTTTCTTCAACGCTGCCTTTTACGGTGCAGTATGCAGTAAACAATTGAGTTAATGAGTTCGG CCATGAACAATTGAGTTTTCCCACCTCATCGTAAACCCTACACCCTAAACCCTTCACTAAAGCTTGTTACTGAGAGTAAC TATACATTTATCACATATTGTCTAATCTAGAGTTCCATGAATCTCTTTCCCGAAAGAATGATATTCTATGTAGCATTTGA AATTTTCTTTCTGAAAAAGGTCTTCCTATCTTGCTGTGTTTTCTCCTTGTTTGCTCACAGCTTCTTTGAAATATAAATGC TTGCAGGGAGAAACAGGAAAAATGTCTGCCAGTGATCCCAATTCTGCAATATATGTTACTGATTCTGCAAAAGATATAAA GAATAAGGTTTGTTTCTGAAATTACTCTTAAAAGCTTTGATTTATTATCTGTTTCTGACATTTAAGTCTTGCAGATCTAT TTGTTCATCGTAATAAAAATTAGCCGCTGAACCTTAGTTTGTCAATGTTCATTGTTGATACTAGTGTCTAGTGTTTCTAC GCTTCGGATCCCGATTCGTTACCAACTAAAAAGAGCTACCGATGTAAATGAATGAAGAATCATATTTGGTGTCTATGTAA TGTGTATGTGCAAGATATAGATGGGTGTGCTCTCACTTTCCCTTGAAATTCATTCTGACTTGTGACCAATCCCCAGACCT CCTTATAGTAGTAAGCAATTAATGTGCAAGATATAGATGACATGCCTCTCACTTAATAATTTGTGCCCTTTACCCCTTGT GCTCCGCTCTTTGTTTCTCTGATCATTTATTCTTTGTTTTTTTTACTTCAACCTAAGTCCATCATAAATGTATATGTGTG GCTATCTACAGGTAAACAAGTATGCGTTCTCCGGTGGGCAAGATTCTATAGAAAAACATAGGCAATTAGGGGCAAATCTT GAGGTAATGATGTTCTTATCACTTTATTTTATGAAAAGTATGCTGTTTACATGTAAGAAATGTGTGAACATACAACATTT AGTTATCGAAATCCTAAAGGAAAGAGTGAAGAAAGATTAAACAGATATACCCATCAAATAAAAAATTATCAAACCCCTTC CATGCTCCGCTTTTTGTCCAGTTAGTTATATAGGCTTTTAGCTCAAGAATCTTGACATTTTGTAACATTCCTCAGGTAGA TATACCAATCAAATACCTTTCCTTTTTCCTAGAAGATGATGATGAACTTGAACACATAAAGAAGGTCAGATTTCTATATT TGTCCTAATTTGTTTTACAAGCAGTGTAATAAGACTTGTTTAATTTCTTTTCTGACAAGTTGTATCATTCTCTCATAGGA GTATGGAGCAGGGCGCATGCTCACTGGTGAGGTGAAGCAGCGCCTAGTCGAAGTTTTGACTGCACTAGTGGAAAGACATT GTAGGGCTCGGGCTGCTGTGACTGAAGAGGTATGCACTCAACACTAATAAGTTTTTTGTCAAAAATGCTTGTACTGTAA
CDS sequence (LotjaGi3g1v0068700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGCGCCATCAGAGACGAAGAAGGAAGAAGAGGAGCAAGTGGTGAATCCATGGGAGGTTTCAGCCAAGGACGGTGG CAAGATCGATTACGACAAGCTCATCGACCGTTTCGGATGCCAAAGGCTCGACCAATCCCTCATCCAACGCTTCGAGCGAC TCACCTCTCAGCCTGCTCACGTATTCCTCCGCCGCGGCGTTTTCTTCGCTCACCGTGATTTTACAGATATTTTGGACGCT TATGAAAAGGGTGATAGGTTTTACTTGTATACCGGTCGAGGACCGTCTTCCGAAGCTTTGCATTTGGGACATTTGATTCC ATTCATGTTCACCAAGTATTTGCAAGATACCTTTAAGGTTCCTCTGGTTATACAGCTCACTGATGATGAGAAGTTCTTGT GGAAAAATCTTACTATCGAGGAGAGCCAAAGACTTGCACGGGAGAACGCAAAGGACATCATTGCTTGTGGTTTTGACATT TCAAAGACATTTATCTTCTCTGATTTCAGTTATGTCGGTAGTGCCTTCTACAAGAACATGATGGAGATTGCAAAGCGTGT GACTTATAACCAGGCTGTTGGTATTTTTGGTTTCACTGGGGAAGATCATATTGGAAAAGTTAGTTTTCCACCTGTGCAGG CAGCTCCATCATTTCCGAGTTCATTTCCTCACCTATTTTCTGGCAAAGAAAAACTCCGTTGTTTGATTCCTTGTGCAATT GACCAGGATCCTTATTTTAGAATGACACGAGATGTTGCTCCTAAACTACAATATAACAAACCGGCCTTGATTGAATCAAC ATTCTTCCCTGCATTACAGGGAGAAACAGGAAAAATGTCTGCCAGTGATCCCAATTCTGCAATATATGTTACTGATTCTG CAAAAGATATAAAGAATAAGGTAAACAAGTATGCGTTCTCCGGTGGGCAAGATTCTATAGAAAAACATAGGCAATTAGGG GCAAATCTTGAGGTAGATATACCAATCAAATACCTTTCCTTTTTCCTAGAAGATGATGATGAACTTGAACACATAAAGAA GGAGTATGGAGCAGGGCGCATGCTCACTGGTGAGGTGAAGCAGCGCCTAGTCGAAGTTTTGACTGCACTAGTGGAAAGAC ATTGTAGGGCTCGGGCTGCTGTGACTGAAGAGGTATGCACTCAACACTAA
Protein sequence (LotjaGi3g1v0068700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAPSETKKEEEEQVVNPWEVSAKDGGKIDYDKLIDRFGCQRLDQSLIQRFERLTSQPAHVFLRRGVFFAHRDFTDILDA YEKGDRFYLYTGRGPSSEALHLGHLIPFMFTKYLQDTFKVPLVIQLTDDEKFLWKNLTIEESQRLARENAKDIIACGFDI SKTFIFSDFSYVGSAFYKNMMEIAKRVTYNQAVGIFGFTGEDHIGKVSFPPVQAAPSFPSSFPHLFSGKEKLRCLIPCAI DQDPYFRMTRDVAPKLQYNKPALIESTFFPALQGETGKMSASDPNSAIYVTDSAKDIKNKVNKYAFSGGQDSIEKHRQLG ANLEVDIPIKYLSFFLEDDDELEHIKKEYGAGRMLTGEVKQRLVEVLTALVERHCRARAAVTEEVCTQH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 386 | 381 | 5.6E-211 | – | |
| PANTHER | 6 | 386 | 381 | 5.6E-211 | – | |
| Gene3D | 7 | 281 | 275 | 6.5E-132 | ||
| SUPERFAMILY | 13 | 385 | 373 | 9.14E-98 | – | |
| Pfam | 85 | 370 | 286 | 1.4E-21 | ||
| TIGRFAM | 86 | 384 | 299 | 4.2E-86 | ||
| CDD | 88 | 370 | 283 | 4.13856E-103 | ||
| ProSitePatterns | 95 | 105 | 11 | - | ||
| PRINTS | 100 | 116 | 17 | 7.8E-22 | ||
| PRINTS | 152 | 171 | 20 | 7.8E-22 | ||
| PRINTS | 234 | 255 | 22 | 7.8E-22 | ||
| PRINTS | 278 | 288 | 11 | 7.8E-22 | ||
| Gene3D | 282 | 389 | 108 | 6.4E-52 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | Aminoacyl-tRNA ligase activity | Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP. | ||
| Molecular function | Tryptophan-tRNA ligase activity | Catalysis of the reaction: ATP + L-tryptophan + tRNA(Trp) = AMP + diphosphate + L-tryptophanyl-tRNA(Trp). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | TRNA aminoacylation for protein translation | The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA and the alpha carboxylic acid group of an amino acid, to be used in ribosome-mediated polypeptide synthesis. | ||
| Biological process | Tryptophanyl-tRNA aminoacylation | The process of coupling tryptophan to tryptophanyl-tRNA, catalyzed by tryptophanyl-tRNA synthetase. The tryptophanyl-tRNA synthetase is a class-I synthetase. The activated amino acid is transferred to the 2'-OH group of a tryptophan-accetping tRNA. The 2'-O-aminoacyl-tRNA will ultimately migrate to the 3' position via transesterification. |
Expression pattern of LotjaGi3g1v0068700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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