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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0075400 |
Transcript ID | LotjaGi3g1v0075400.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Splicing factor 3A subunit 2; TAIR: AT2G32600.1 hydroxyproline-rich glycoprotein family protein; Swiss-Prot: sp|Q15428|SF3A2_HUMAN Splicing factor 3A subunit 2; TrEMBL-Plants: tr|I1MCD5|I1MCD5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0075400 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:8269381..8273996) extracted from Lotus japonicus Gifu genome v1.2.
CTATTTTTGTGTTCCATAATTTTTTTTTTTTGGTTAAGTGTTCCATAATTTATATCCGGAAGCTTTAAGATTCTAATTCC CGAAATTAAAATCCAACATTCAATTTCTTTGTGTTCCGGGAAGCGGAGGTATTATAGGGCTTATGAGCATAGGCCCACTA GTGAAAGAGATGAAAAGCCCAACAAAGATGCAAGATAAGAAGAAACCACGTCCTATATATCACTCTTCCCCTTCAACCAA ATTGAAACTGTTGCAATCAAAACCAGTGCAGCGCACACACTCCACTCGTAACCAGTAGCTCGCAATGGATCGGGAATGGG GATCGAAACCCGGAAGCGGAGGCGCCGCGACGGCGCAGAACGAAGCCATCGACCGCCGCGAGCGTCTCCGGCGACTGGCC TTGGAAACCATCGACCTCGCCAAGGACCCATACTTCATGCGCAACCACCTTGGCAGCTACGAGTGCAAGCTCTGCCTCAC GCTCCACAACAACGAGGGTAACTACCTCGCCCACACGCAGGGGAAGCGCCACCAGACCAATCTCGCTAAGCGCGCCGCGC GTGAGGCCAAAGACGCCCCTGCTCATCCACAACCTCACAAGCGGAAGCTCTCGCTTCGGAAATCTGTGAAGATTGGTCGC CCTGGGTATCGTGTTACCAAGCAATTTGACCATGATACGAAGCAACGATCTCTTCTCTTCCAGGTAAGGAAACCCTAATT TTTTTGAGAAAGCCCTTTTTGAATTGAGCTTGTTTGTATTTTTATATGCTCTATTGTAGTTGTTGGGTGTGTTAAAAATT AAATTTTGCTCTACTTCCATGTTTTTGTGCTGCATTGTATCTGTGTTTTGTGTTGTTTATGTATTTGTATTCACCCTTAG TTTTAGTGGGTGTATTTTTGAAATTGTAAGTAAGAATGTAATGGTTTAATACTTCTAATTAAGGCTCCAAGTAATAGTGT ATTTGACCAATAAACTCATTGGTAAGGAGCATTTCCTTCAAGAGTGAATTAGGGAATGGAAGCGTCGGAGATGAAGTTAG GGTCACACCTATATTGGAAAAGATGGTATGGCTAATGGCCTTAGTTTATTTGGTTTGAGCAGAATCATAGAAGCACTAGT ATGGAGGTGAATGTAAGCTATAAGTCAAACCACTATGTAAACTATAATTTTGAAATTTGCTCTATTCCCATCTCTGTGCT GCAGTATCTTTGTCTCCTGTTGTTTATGTACTTGTATAAACTCTGAAGTTTTAGTATTTGTATATTGACACTGGAATTAA TAATGTAATGGTTTGATTCTTCAAACTAAGGCCGCAAATAGTAGTGGATTTTATCAACAAATCACCGGTAAGGAGCATTC CCTCAACTATCTCTCTAATGCTTTCATACTCGATGGAATAGGATCGAAAGCATTAGAGAGAATTAGGGTTGGACCTATAG TGGAATAGATGGTATAGTGGTTTGGGCATGCGTAAAGCAGATCTGTAGAAGCTCCGGTAAAGAGGCCAATGTAAACTTTA AGTCATTGGATAGGATATGATTGTGCTTTTTCTCAATCCAACAACTTTGCTCAGTTGGAAAACCTGTCTTGAAAAGCCAA GCATGTCAGTTGAATGTGCTTTCAACTGGAAACTAAACACACTCTAGGAAGGATTTGAAGTGAAGATAATTAGATAAATG GTTTGTTATGATTTGTAATTAGGATATTATGGTATTATTTGATCTATGTTGCTGATCCCACCTTGTAGGAAAAACTTTAG CTATTGTTGTTGTTGTTGTCAATTACACTTCTCCCCACAACTTCTCAGCTTCTTACAGTGTAATCAAATAGCGGTTATAA CGGCGCTATGCCGTTATAACGTAGCGGATTTTAGGGCTGGCGCGATCGCGACGCCGCGACGTCGCGGCCACCGCGATAAA CGCAATCGCGGCCGCGAAAGCCATAGCGGCTATGGACACTGAAGCGGAAATAGCGGATTTCCTGGAAACCTAAACGTTTT TTTTGGCTGATTGGAGCATCGAATAAGGAAATTGCTTGATTGGTGCATTGAATTAGGAAATTGGTTAATTGGAGCATTGA ATTAGGAAATTGTTGATTGGGGCATTAAATTAGGAAACCTGAACGTTTTTTTTTCCCTTTATTAAGACCTATTCACTTCA TTCTCCTTACGCTCTCTTCTGAATTCTCTTTCTCTCTTCCTCATTGTTGATTGGGGCATTAAATTAGGAAACCTGAACCT TTTTGTGTTTTTATTCTCACTGTTTTGAGTTTACAGTGACTGGTTTTGTGTTTTTATTTTCACTGTTTTGAGTTTACCAT GTCTGGTTATTTGGAACTGCCTTGGATATTTTAATATTTTTGAGTTATGAATGGTTATTTCATGCATTTTCATTACATGT CTTGTTTTTATTTTGTGCAGCAGTTTTTTTTTTGAAATAATAGCTTGTGACAAGCTATTTTTTATATAAAACTTTACTTA TTTTAACCGCTATGCGGTTTCCGCTATTTGCCCGCTACGCTATCCGTTATATGTCATAGCGGATTTTGGACTCATCGCGA TTTGCCGCGATCCGCGATTAATTACACTGGCTTCTTATTATTCTAACATTATATGATGATATAATTTTTTTATTTCTGTT AATCTAGATTGAATATCCTGAGATTGAAGAGCTCACCAAGCCAAGGCACCGATTTATGTCTTCCTACGAGCAGGTTTATG ATTTTGATTTTGTTTATCTACGTTTCTCTTCCTCTGTGTTTTGATCTCTTGCTTTAGCATTTCTGTTTTTCTCACTTTTC ACATTTTCTTGTGGACGCAGAGGGTGCAACCGTTTGATAAAAGATATCAGTATCTCTTATTTGCTGCGGAACCATATGAA ATAATTTCTTTCAAGGTAAATCATTGCTTTTGTCTATTCTTTGGTTTAAAGAAATAAATCTTTTTGGACCTTCAGTACAT ATGTTTCAAGCTGCAGAAATTTACTTCTTGTGCTTATTAATCTACATTTTTCAGGTACCTAGCACAGAGATTGATAAGTC TACACCAAAGTTTTTCTCGCATTGGGACCCAGACTCAAAGATGTTTACAGTTAGTACATTCACTCCTCTTTCCTATTGGT TATGGAAAAGTTGGTCTGTCCAATTGTACATGTTGTGTGTGTAATTGGGAATATTGTGTTGATATCTGCATCATGAGAGC AAGCGTGCTCACTGTGCAAAATTGCAAATGCCTTTCTTTAATGGAAAAATGATCTTTTGATTGAAAAATTGCAAAATTAT TGCATTCTAATTGTTGTGCGCCCTTGTTACCATCAGTGCAAATTATGAAATTAATGATTCAACTTCAAGCGCTTGATAAC TGAACTAGGCTGCAATTTTCGCTTTCTCTTTGTTTCTTGCTTTCCTTTGTTCTTTTCTTTAATATGATGTGCATTACTAA TATTTCTTTTCTTGTCTGCAGCTGCAATTGTATTTCAAAACCAAGCCACCAGAGGCTAACAAACCACAGCCTGCATCTAC TGACAATGGCCCTACAGCTCCTGGGGTTCCACCAAGGCCTTTGCCTCCACCACCACAAGGTGCACTACCACCACCACCAC CTCCTCCACAAGGGCTACCTCCTGGTGCACCTATGGGAAATCCTCCTAGAGCCCCTCCACCTCCAATGCCAGGATCTGCA CCGCCTCCGCCTCCTATGGCAGCAAACGGTCCTAGACCTGCTCCTCCTGGTGGAATGCCATCTATCCCACCCCCACCTCC TGTTAGTGGCGCATCAGCAGGTTTCAACATGGGTGCTAGACCTCCATTAATGCCACCTCCGCAAGGGTACTAGACCTCCA CCAACACCGTATCGGAAAGGTTTTCCAGCCCAATAAATGCTGAGCCAGGGTGTCCCTTTGCTGCCACCACCCGTAACATC ACAATGTAGGTCCTCAGGCTTTTGAGTACAGGGAACATCATTTGAAGTGTTAACCATTGATGTCCCCTATCTGCTAAGGA CCAACAGCTTTGTATATTAGAGGTAGGCTTCATAGCACTGCAGAGTATCCAGATTACGAGTACACAGTTCATTATGTCAT TTGTTTTGGATTTACAAATTAAGATGTTGCACTATAAGTTAGATGGTGTTTTTGAATTGCTCGATATGGTTGGGAAAATT TCGGTTTGAATGGTAAGAGTGCTTTTCAGTGTTAATGCTTTGCTTGATCAGGTCATTTCTGATGTAGTAAGTAGTAACTA TTGGGTTATTGATTATAGAAATTCAGAGGACCAATTATGGAAACATTAACGTATCCAAGTATCAGTATTATCATTGATGC TTTATCTTTGTTTGTGTACATCCGAAGATCTTATGAATAATTTTCATCGTCCCAAATCATTTAGAACTTCAGTGGCAGTA GGTCGTTTGATCAGTGAAGGTAAATCGTGAAACAAATCTATCTTAAACTCAGATTGGTGATTGACTCTTGAGGTGCTGGG TGAGTTATTGGTAGGATCGGATTTATAAATGCATATTGAAAATTGTTTGTATTTAAGTAAAGTATGATATAAGTTAAAAA AAAAAGTAAAGTATGCCATAGCTTCTTCCATGGCGTATGGCTTTATCCCTCTGCTA
CDS sequence (LotjaGi3g1v0075400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCGGGAATGGGGATCGAAACCCGGAAGCGGAGGCGCCGCGACGGCGCAGAACGAAGCCATCGACCGCCGCGAGCG TCTCCGGCGACTGGCCTTGGAAACCATCGACCTCGCCAAGGACCCATACTTCATGCGCAACCACCTTGGCAGCTACGAGT GCAAGCTCTGCCTCACGCTCCACAACAACGAGGGTAACTACCTCGCCCACACGCAGGGGAAGCGCCACCAGACCAATCTC GCTAAGCGCGCCGCGCGTGAGGCCAAAGACGCCCCTGCTCATCCACAACCTCACAAGCGGAAGCTCTCGCTTCGGAAATC TGTGAAGATTGGTCGCCCTGGGTATCGTGTTACCAAGCAATTTGACCATGATACGAAGCAACGATCTCTTCTCTTCCAGA TTGAATATCCTGAGATTGAAGAGCTCACCAAGCCAAGGCACCGATTTATGTCTTCCTACGAGCAGAGGGTGCAACCGTTT GATAAAAGATATCAGTATCTCTTATTTGCTGCGGAACCATATGAAATAATTTCTTTCAAGGTACCTAGCACAGAGATTGA TAAGTCTACACCAAAGTTTTTCTCGCATTGGGACCCAGACTCAAAGATGTTTACACTGCAATTGTATTTCAAAACCAAGC CACCAGAGGCTAACAAACCACAGCCTGCATCTACTGACAATGGCCCTACAGCTCCTGGGGTTCCACCAAGGCCTTTGCCT CCACCACCACAAGGTGCACTACCACCACCACCACCTCCTCCACAAGGGCTACCTCCTGGTGCACCTATGGGAAATCCTCC TAGAGCCCCTCCACCTCCAATGCCAGGATCTGCACCGCCTCCGCCTCCTATGGCAGCAAACGGTCCTAGACCTGCTCCTC CTGGTGGAATGCCATCTATCCCACCCCCACCTCCTGTTAGTGGCGCATCAGCAGGTTTCAACATGGGTGCTAGACCTCCA TTAATGCCACCTCCGCAAGGGTACTAG
Protein sequence (LotjaGi3g1v0075400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDREWGSKPGSGGAATAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNL AKRAAREAKDAPAHPQPHKRKLSLRKSVKIGRPGYRVTKQFDHDTKQRSLLFQIEYPEIEELTKPRHRFMSSYEQRVQPF DKRYQYLLFAAEPYEIISFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKTKPPEANKPQPASTDNGPTAPGVPPRPLP PPPQGALPPPPPPPQGLPPGAPMGNPPRAPPPPMPGSAPPPPPMAANGPRPAPPGGMPSIPPPPPVSGASAGFNMGARPP LMPPPQGY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 328 | 328 | 3.1E-136 | – | |
MobiDBLite | 1 | 21 | 21 | - | – | |
Gene3D | 40 | 88 | 49 | 3.5E-5 | – | |
SUPERFAMILY | 48 | 82 | 35 | 1.27E-5 | ||
SMART | 49 | 83 | 35 | 9.0E-8 | ||
ProSiteProfiles | 52 | 82 | 31 | 9.296 | ||
Pfam | 52 | 76 | 25 | 1.5E-6 | – | |
SMART | 89 | 217 | 129 | 4.0E-18 | – | |
Pfam | 110 | 204 | 95 | 1.4E-34 | ||
MobiDBLite | 213 | 328 | 116 | - | – | |
MobiDBLite | 229 | 308 | 80 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi3g1v0075400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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