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LotjaGi3g1v0075400.2

Overview

Field Value
Gene ID LotjaGi3g1v0075400
Transcript ID LotjaGi3g1v0075400.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Splicing factor 3A subunit 2; TAIR: AT2G32600.1 hydroxyproline-rich glycoprotein family protein; Swiss-Prot: sp|Q15428|SF3A2_HUMAN Splicing factor 3A subunit 2; TrEMBL-Plants: tr|A0A1J7GPB1|A0A1J7GPB1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0075400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:8269685..8273263) extracted from Lotus japonicus Gifu genome v1.2.

ATGGATCGGGAATGGGGATCGAAACCCGGAAGCGGAGGCGCCGCGACGGCGCAGAACGAAGCCATCGACCGCCGCGAGCG TCTCCGGCGACTGGCCTTGGAAACCATCGACCTCGCCAAGGACCCATACTTCATGCGCAACCACCTTGGCAGCTACGAGT GCAAGCTCTGCCTCACGCTCCACAACAACGAGGGTAACTACCTCGCCCACACGCAGGGGAAGCGCCACCAGACCAATCTC GCTAAGCGCGCCGCGCGTGAGGCCAAAGACGCCCCTGCTCATCCACAACCTCACAAGCGGAAGCTCTCGCTTCGGAAATC TGTGAAGATTGGTCGCCCTGGGTATCGTGTTACCAAGCAATTTGACCATGATACGAAGCAACGATCTCTTCTCTTCCAGG TAAGGAAACCCTAATTTTTTTGAGAAAGCCCTTTTTGAATTGAGCTTGTTTGTATTTTTATATGCTCTATTGTAGTTGTT GGGTGTGTTAAAAATTAAATTTTGCTCTACTTCCATGTTTTTGTGCTGCATTGTATCTGTGTTTTGTGTTGTTTATGTAT TTGTATTCACCCTTAGTTTTAGTGGGTGTATTTTTGAAATTGTAAGTAAGAATGTAATGGTTTAATACTTCTAATTAAGG CTCCAAGTAATAGTGTATTTGACCAATAAACTCATTGGTAAGGAGCATTTCCTTCAAGAGTGAATTAGGGAATGGAAGCG TCGGAGATGAAGTTAGGGTCACACCTATATTGGAAAAGATGGTATGGCTAATGGCCTTAGTTTATTTGGTTTGAGCAGAA TCATAGAAGCACTAGTATGGAGGTGAATGTAAGCTATAAGTCAAACCACTATGTAAACTATAATTTTGAAATTTGCTCTA TTCCCATCTCTGTGCTGCAGTATCTTTGTCTCCTGTTGTTTATGTACTTGTATAAACTCTGAAGTTTTAGTATTTGTATA TTGACACTGGAATTAATAATGTAATGGTTTGATTCTTCAAACTAAGGCCGCAAATAGTAGTGGATTTTATCAACAAATCA CCGGTAAGGAGCATTCCCTCAACTATCTCTCTAATGCTTTCATACTCGATGGAATAGGATCGAAAGCATTAGAGAGAATT AGGGTTGGACCTATAGTGGAATAGATGGTATAGTGGTTTGGGCATGCGTAAAGCAGATCTGTAGAAGCTCCGGTAAAGAG GCCAATGTAAACTTTAAGTCATTGGATAGGATATGATTGTGCTTTTTCTCAATCCAACAACTTTGCTCAGTTGGAAAACC TGTCTTGAAAAGCCAAGCATGTCAGTTGAATGTGCTTTCAACTGGAAACTAAACACACTCTAGGAAGGATTTGAAGTGAA GATAATTAGATAAATGGTTTGTTATGATTTGTAATTAGGATATTATGGTATTATTTGATCTATGTTGCTGATCCCACCTT GTAGGAAAAACTTTAGCTATTGTTGTTGTTGTTGTCAATTACACTTCTCCCCACAACTTCTCAGCTTCTTACAGTGTAAT CAAATAGCGGTTATAACGGCGCTATGCCGTTATAACGTAGCGGATTTTAGGGCTGGCGCGATCGCGACGCCGCGACGTCG CGGCCACCGCGATAAACGCAATCGCGGCCGCGAAAGCCATAGCGGCTATGGACACTGAAGCGGAAATAGCGGATTTCCTG GAAACCTAAACGTTTTTTTTGGCTGATTGGAGCATCGAATAAGGAAATTGCTTGATTGGTGCATTGAATTAGGAAATTGG TTAATTGGAGCATTGAATTAGGAAATTGTTGATTGGGGCATTAAATTAGGAAACCTGAACGTTTTTTTTTCCCTTTATTA AGACCTATTCACTTCATTCTCCTTACGCTCTCTTCTGAATTCTCTTTCTCTCTTCCTCATTGTTGATTGGGGCATTAAAT TAGGAAACCTGAACCTTTTTGTGTTTTTATTCTCACTGTTTTGAGTTTACAGTGACTGGTTTTGTGTTTTTATTTTCACT GTTTTGAGTTTACCATGTCTGGTTATTTGGAACTGCCTTGGATATTTTAATATTTTTGAGTTATGAATGGTTATTTCATG CATTTTCATTACATGTCTTGTTTTTATTTTGTGCAGCAGTTTTTTTTTTGAAATAATAGCTTGTGACAAGCTATTTTTTA TATAAAACTTTACTTATTTTAACCGCTATGCGGTTTCCGCTATTTGCCCGCTACGCTATCCGTTATATGTCATAGCGGAT TTTGGACTCATCGCGATTTGCCGCGATCCGCGATTAATTACACTGGCTTCTTATTATTCTAACATTATATGATGATATAA TTTTTTTATTTCTGTTAATCTAGATTGAATATCCTGAGATTGAAGAGCTCACCAAGCCAAGGCACCGATTTATGTCTTCC TACGAGCAGGTTTATGATTTTGATTTTGTTTATCTACGTTTCTCTTCCTCTGTGTTTTGATCTCTTGCTTTAGCATTTCT GTTTTTCTCACTTTTCACATTTTCTTGTGGACGCAGAGGGTGCAACCGTTTGATAAAAGATATCAGTATCTCTTATTTGC TGCGGAACCATATGAAATAATTTCTTTCAAGGTAAATCATTGCTTTTGTCTATTCTTTGGTTTAAAGAAATAAATCTTTT TGGACCTTCAGTACATATGTTTCAAGCTGCAGAAATTTACTTCTTGTGCTTATTAATCTACATTTTTCAGGTACCTAGCA CAGAGATTGATAAGTCTACACCAAAGTTTTTCTCGCATTGGGACCCAGACTCAAAGATGTTTACAGTTAGTACATTCACT CCTCTTTCCTATTGGTTATGGAAAAGTTGGTCTGTCCAATTGTACATGTTGTGTGTGTAATTGGGAATATTGTGTTGATA TCTGCATCATGAGAGCAAGCGTGCTCACTGTGCAAAATTGCAAATGCCTTTCTTTAATGGAAAAATGATCTTTTGATTGA AAAATTGCAAAATTATTGCATTCTAATTGTTGTGCGCCCTTGTTACCATCAGTGCAAATTATGAAATTAATGATTCAACT TCAAGCGCTTGATAACTGAACTAGGCTGCAATTTTCGCTTTCTCTTTGTTTCTTGCTTTCCTTTGTTCTTTTCTTTAATA TGATGTGCATTACTAATATTTCTTTTCTTGTCTGCAGCTGCAATTGTATTTCAAAACCAAGCCACCAGAGGCTAACAAAC CACAGCCTGCATCTACTGACAATGGCCCTACAGCTCCTGGGGTTCCACCAAGGCCTTTGCCTCCACCACCACAAGGTGCA CTACCACCACCACCACCTCCTCCACAAGGGCTACCTCCTGGTGCACCTATGGGAAATCCTCCTAGAGCCCCTCCACCTCC AATGCCAGGATCTGCACCGCCTCCGCCTCCTATGGCAGCAAACGGTCCTAGACCTGCTCCTCCTGGTGGAATGCCATCTA TCCCACCCCCACCTCCTGTTAGTGGCGCATCAGCAGGTTTCAACATGGGTGCTAGACCTCCATTAATGCCACCTCCGCAA GGGTACTAGACCTCCACCAACACCGTATCGGAAAGGTTTTCCAGCCCAATAAATGCTGA
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0075400.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGATCGGGAATGGGGATCGAAACCCGGAAGCGGAGGCGCCGCGACGGCGCAGAACGAAGCCATCGACCGCCGCGAGCG TCTCCGGCGACTGGCCTTGGAAACCATCGACCTCGCCAAGGACCCATACTTCATGCGCAACCACCTTGGCAGCTACGAGT GCAAGCTCTGCCTCACGCTCCACAACAACGAGGGTAACTACCTCGCCCACACGCAGGGGAAGCGCCACCAGACCAATCTC GCTAAGCGCGCCGCGCGTGAGGCCAAAGACGCCCCTGCTCATCCACAACCTCACAAGCGGAAGCTCTCGCTTCGGAAATC TGTGAAGATTGGTCGCCCTGGGTATCGTGTTACCAAGCAATTTGACCATGATACGAAGCAACGATCTCTTCTCTTCCAGA TTGAATATCCTGAGATTGAAGAGCTCACCAAGCCAAGGCACCGATTTATGTCTTCCTACGAGCAGAGGGTGCAACCGTTT GATAAAAGATATCAGTATCTCTTATTTGCTGCGGAACCATATGAAATAATTTCTTTCAAGGTACCTAGCACAGAGATTGA TAAGTCTACACCAAAGTTTTTCTCGCATTGGGACCCAGACTCAAAGATGTTTACACTGCAATTGTATTTCAAAACCAAGC CACCAGAGGCTAACAAACCACAGCCTGCATCTACTGACAATGGCCCTACAGCTCCTGGGGTTCCACCAAGGCCTTTGCCT CCACCACCACAAGGTGCACTACCACCACCACCACCTCCTCCACAAGGGCTACCTCCTGGTGCACCTATGGGAAATCCTCC TAGAGCCCCTCCACCTCCAATGCCAGGATCTGCACCGCCTCCGCCTCCTATGGCAGCAAACGGTCCTAGACCTGGTGCTA GACCTCCATTAATGCCACCTCCGCAAGGGTACTAG
Download CDS Sequence

Protein sequence (LotjaGi3g1v0075400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDREWGSKPGSGGAATAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNL AKRAAREAKDAPAHPQPHKRKLSLRKSVKIGRPGYRVTKQFDHDTKQRSLLFQIEYPEIEELTKPRHRFMSSYEQRVQPF DKRYQYLLFAAEPYEIISFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKTKPPEANKPQPASTDNGPTAPGVPPRPLP PPPQGALPPPPPPPQGLPPGAPMGNPPRAPPPPMPGSAPPPPPMAANGPRPGARPPLMPPPQGY
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23205
1 304 304 1.7E-141 –
MobiDBLite
mobidb-lite
1 21 21 - –
Gene3D
G3DSA:3.30.160.60
40 88 49 3.1E-5 –
SUPERFAMILY
SSF57667
48 82 35 1.13E-5
IPR036236
SMART
SM00451
49 83 35 9.0E-8
IPR003604
Pfam
PF12874
52 76 25 1.3E-6 –
ProSiteProfiles
PS50171
52 82 31 9.296
IPR000690
SMART
SM01050
89 217 129 4.0E-18 –
Pfam
PF16835
110 204 95 1.2E-34
IPR031781
MobiDBLite
mobidb-lite
213 304 92 - –
MobiDBLite
mobidb-lite
229 304 76 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0005634
Cellular component Nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Subterm of
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0075400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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