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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0075700 |
| Transcript ID | LotjaGi3g1v0075700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectin lyase-like superfamily protein, putative; TAIR: AT5G17200.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q9LW07|PGLR3_ARATH Probable polygalacturonase At3g15720; TrEMBL-Plants: tr|A0A0L9VUQ8|A0A0L9VUQ8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0075700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:8291922..8296491) extracted from Lotus japonicus Gifu genome v1.2.
CAGAAAAAAAAAAAACACATTTCGTTTTCCTCTTTCGCTTGTTAAATATGCAGAGGCTAATCTGTGGCTTTTTGATTCTT GGTTTTGTTTCATCCTGTCTATGCATAAACATTATTCATGATGTGACGCGCTATGGAGCTCGTGGAGATGGAAAATCTGA TGATTCACATGTATGCGTTTATATATGTTTCTTCTTCCTAATTTTTTTACTTGAGGATAAGCTTTAGACATGTTTGAAAG TTGAAACTAGCTAGGAAGATTAACAAATAAAATTAAAAACGGAAAACAAATTGAAAACTAATTAAACAAATCAGAGTTTA TCATGTCTATTTAATAGCAAATTTTATAAATTATTTTGCCAATTAAGCAATCCTAATTAACAAGATCTTTCCATTTTGAT TTTCATGGCAGGCATTCTTGAGTGCATGGCAACAAGTGTGTAGAGCTGGAGGGATGGCAACCCTATTTATACCAGGAGGA AAAACATTCTTGGTAACGAGCATGACAACAATATCAGGTCCTTGCAAGACCTCAATTATTCACATTCAGGTATAGCTAAT ATCCAACATGCATGCAATTGATCGAATAATTTTTGGGGATCATATATGGTTTTATTTTGTTAAAATTAAACTTATTTTTT TATTTCACTAAAAATAAAAATACATGTTGATAGTGTTCAATAAATGTTAATAACATTTGACACAGTTTTAACAAAATATT ATATTTGATACTCGATGATAAACCTTAATTTGGTCATACATGATTTAAATGACCTTCAACTCAGGAAATAATGATTAGCT AGCTAGGGAGAAGACCACACTCCTAATATTTGCCCTTGTTGTAAGTTACCCTGGTTAGTATAGAATTTTTAATAGATGAA AAAAACAAAATTAAATTTCAATTTATGAAATTAATCATGGATCCTTCATTAATTTAGACAATAACATATTTGAATCATCA TTAAAAAAACATATTTAATTTGAATCATGTTAATGAGCAAATAAAATAACTAAAAGTAAGAATATTTTGATTAAAAAAAT GAAGAGATAATATTATGGTAATTAGTTATTGACTTAGAGGAAACTACTAGTTTTATACCTATTTATAAGTCACTTTTAAA TTATTTATATGAATTAAGGAAATTAGTTATTTGTCTTAAATTTATAAAAATAAAAATAAAAAACCAAACCATGAGCTGTA GTGTGATCTCTCATCTAGTTTCTTAAACCATAAGGTCAAAGGTTCAATCTCATCCCATGGAAAAGAAGCACATTTCGTGC TCAACCATTTACTGTTTAGTGCAAGTACTAGTGATGATGAAATTAGTTACTACTATCGGCAATTGTTCCATGGTCTAAAC AAAACAAAGTAATGCTAAATTTCCTACATTACCCTCTATTCAAAAGCTTAACAAATTTATTATTCAGTGTTGGACGATTA AATACCAAGCATTAAATATAAGGAACATAATTTCAGAAATATAAGGAACATGAAAACTGTAGTTACATGCACTCAATAAA TACCTATCAAAGTCAACATAAACATAATAAATGATCTCTTGTGTTTTGCCTCTTGCCCTGCAGCTGCTAGGGAACATTGT TGCGCCTTCTTTTGATGCATGGGGGCCTGACAAGTCAAAATGGATTTCAATTCAATATGTAAACCGTCTCACACTTTATG GTGGAGGAAAAATTGATGGCCAGGGTCATACATGGTGGGAGAGATGCAAAAATTGTTATCGACCTATGGTATATATGATA ACTCACTCTTTCTTTTTGTAACCTTTAACTTATTTCAGTATTTAATTTGATTATTTTCAGACCATACTAAACCAACCTAC CTAAAGGAAGACCTGTTTTTCGTTTAATAGGCTTTGATTTGACCCTTAACTCATTTATGTAGAAGTCATTAATAGTTATT GTTTGAGTCTGAATGATTTCCGGCCGTATAAACTAGGACACTGGCCTGTACTTCATTATGTCAACAAGGTTAAAGTCAAC AAACTCTATCCACTTAAATGGTACTCCCTCCGTTCCTATATATAAGTCACAAATAACTAATTCTCTTAGATTAAGAAAAG TAGTTACTAGTAATCAATTTGTAAAAAAAATGATTTACTTTCCTACATTACCCATATTTACTTTCCTATGATTTTCTCTC TCCAAGTTAATACTTCTAAAGTTTATCATCTCTTTCATATTAAATATGAGGGTGAACTTGGAAAAAATTATTTAATGTTT CCTAGATATTAGAAAGTGACTTATATTTTGTAACAAAGTTCTTTCAAAAAATATGACTTATAATAGGGAACGGAGGGAGT AAAAGAGAGGATAGTGGATGCATGAAGAGTTACAAAATTTAATGATAGGAATGATTTTTTTTACTCCCTCCGTCCTTAAT TATAAGTTAAAAATGTACTACATTCGTTCCAAACTTCCAATATTACTACATACGTACACTCAAGGGCGGATCTACCTTAA GTTCAGGGGGTTCAGTTGAACCCCCTGAACAAAAAAAATTGCCCTTATTTGCTTATATAATTTTTTTTGAACCCCCTGGA AATTTTAAATTATACTAGTAGACTAAGTTTTGCACCTATTTGCATAAAAAACTTACTTATTTGTATCAACTATGACTTGT ATACTTTCTGATGTATAAACATATTAAAGTTGTTTTTAATTATATTTTTATCGATGTGTTTATTTAAAAATTTTGAACCC CTAATCCCGGGGTCCTGGATCCGTCACTGCGGTACACTAACTGTTTTTTATATGGGTGATGCAGTCCTTAAGTTTCCATG GATGCAAAGACCTTATTGTTAGTTACCTTCACTTCTTCAATAGTCCTGGAAGTCATATAACCGTAGATGGTTGCGTTGGT GCGAGATTCTCCCATTTAAGTATCCATGCTCCTCCTAACAGCCCCAACACTGATGGATTTGACATTGCTAATTCCAGAAA TATCTTGATAGAAGATTCCACTATAGGAACGGGTAAACCAAAATTTCATCTCATCAAATACAATTATTACATCTGCTATT TTATCATGCCTTGAATTTCTAATTAACAGGTGATGATTGTATTGCGATTAATGGTGGTTCATCTTTCATCAATGCTACTC GAGTTGCTTGTGGACCAGGCCATGGGATAAGGTTACATAAATTGTAAATTTTTTTTTTTTGCTTCAAACATAAATTGTAT CTATGATTTGTTTAGTTATAGAAAATATTTATATTTAGCATGATTATATATTTAGTCCTATCATTTCGGGAATTTGTGAT TTTGATCCCTACAGTTTTAAGTGCTCAAATAAAGTCCTGCTATTTTTCAAAATAGAATAAAATTGGCCCAAATGTTGATA TTTATTTTTTATTCTTATCTCTAAATAATATCATCTAATTAACGTGTCTGAATTAATCAGCGTTGGCAGCCTTGGCAAAC ATGGTGCTCATGACACAGTAGAAGAGGTTTATGTATATGATTGCAGCTTCACAGGGACTCAAAATGCAGCAAGAATCAAG ACAGTTCCAGTAAGTAACTAAGATATGGGTCGGAAATGGAAATTGGACACTTCTATAAATAATATAACAACATACTCTTT ACATAATTTTTTATAATAAATAGATTTTTAAAAATTAAATACGTTTTGTTTAAATATAAATTTATCAATTTTGGAAAAAA AATCGTGTTGACTACGCTTTCAAATTAAAGAATGTGTTTAGTGTATTTTGATCTTCTTTTATCTCCTTTTTTTTATTATT CATTGTACGTAGTACGAAATGGATTATACAAATGCATGGAGATAAATTCTTTTACAATTACATGTTTTAGGAATTGCTTT TCATACACTGAATTATCTATCATATAATCCATCATATAAATTTATATGTGTAGAAGACAAAATACTAGTTTAGCACAATG ATGAAGAGGTAATAATTGCAGGGTGGATCAGGTTATGCGAGGAGGATAACTTTTGAGAAAATAACACTTACAAGGACCGG AAACCCAATAATTATAGACCAGTACTATTCTCTAGCGGTACTCATTTAATTTCAAATTCATATTATATAATATATACCTT TTAATTTCAACTTGTTTTTAAGATCTATGGTCCTCATTTCAATTATGTTTTTGTTTTGAATTTGGGCAAATATTTAGGGG TATTCTTCGGGTTCAACAGTGCAAGTGAGTGATGTGACATATCGTGGAGTCCATGGAACCTCTATAGATGTTATGGCTAT TAACTTAAATTGCTCCCCACCGGGTTGTTTCAATCTTGTGTTCGATAATATCAACATTGTCTCTTCTATCCCAGGAAAGA GGGCTTTTGCTTCTTGCAAAAATGCCCATGGAGCGGTTAGATCTTCTACTCCAAGTATCCATTGCTTATTGAGGTGAATT GTGATGTTACCCTAAAATATTAAAATCTATGTAGTCAAATTATCACTGAATAGATTTTCAATGCAATAATTTTTTTTTTC TTGCGTTCAAGGGAAGGTAATGTGAATAATTTGTCTCATGAAATTAAACGTACATGGTATGTACCTTAATATATCCTTGC ATATTACGAG
CDS sequence (LotjaGi3g1v0075700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGAGGCTAATCTGTGGCTTTTTGATTCTTGGTTTTGTTTCATCCTGTCTATGCATAAACATTATTCATGATGTGAC GCGCTATGGAGCTCGTGGAGATGGAAAATCTGATGATTCACATGCATTCTTGAGTGCATGGCAACAAGTGTGTAGAGCTG GAGGGATGGCAACCCTATTTATACCAGGAGGAAAAACATTCTTGGTAACGAGCATGACAACAATATCAGGTCCTTGCAAG ACCTCAATTATTCACATTCAGCTGCTAGGGAACATTGTTGCGCCTTCTTTTGATGCATGGGGGCCTGACAAGTCAAAATG GATTTCAATTCAATATGTAAACCGTCTCACACTTTATGGTGGAGGAAAAATTGATGGCCAGGGTCATACATGGTGGGAGA GATGCAAAAATTGTTATCGACCTATGTCCTTAAGTTTCCATGGATGCAAAGACCTTATTGTTAGTTACCTTCACTTCTTC AATAGTCCTGGAAGTCATATAACCGTAGATGGTTGCGTTGGTGCGAGATTCTCCCATTTAAGTATCCATGCTCCTCCTAA CAGCCCCAACACTGATGGATTTGACATTGCTAATTCCAGAAATATCTTGATAGAAGATTCCACTATAGGAACGGGTGATG ATTGTATTGCGATTAATGGTGGTTCATCTTTCATCAATGCTACTCGAGTTGCTTGTGGACCAGGCCATGGGATAAGCGTT GGCAGCCTTGGCAAACATGGTGCTCATGACACAGTAGAAGAGGTTTATGTATATGATTGCAGCTTCACAGGGACTCAAAA TGCAGCAAGAATCAAGACAGTTCCAGGTGGATCAGGTTATGCGAGGAGGATAACTTTTGAGAAAATAACACTTACAAGGA CCGGAAACCCAATAATTATAGACCAGTACTATTCTCTAGCGGGGTATTCTTCGGGTTCAACAGTGCAAGTGAGTGATGTG ACATATCGTGGAGTCCATGGAACCTCTATAGATGTTATGGCTATTAACTTAAATTGCTCCCCACCGGGTTGTTTCAATCT TGTGTTCGATAATATCAACATTGTCTCTTCTATCCCAGGAAAGAGGGCTTTTGCTTCTTGCAAAAATGCCCATGGAGCGG TTAGATCTTCTACTCCAAGTATCCATTGCTTATTGAGGTGA
Protein sequence (LotjaGi3g1v0075700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQRLICGFLILGFVSSCLCINIIHDVTRYGARGDGKSDDSHAFLSAWQQVCRAGGMATLFIPGGKTFLVTSMTTISGPCK TSIIHIQLLGNIVAPSFDAWGPDKSKWISIQYVNRLTLYGGGKIDGQGHTWWERCKNCYRPMSLSFHGCKDLIVSYLHFF NSPGSHITVDGCVGARFSHLSIHAPPNSPNTDGFDIANSRNILIEDSTIGTGDDCIAINGGSSFINATRVACGPGHGISV GSLGKHGAHDTVEEVYVYDCSFTGTQNAARIKTVPGGSGYARRITFEKITLTRTGNPIIIDQYYSLAGYSSGSTVQVSDV TYRGVHGTSIDVMAINLNCSPPGCFNLVFDNINIVSSIPGKRAFASCKNAHGAVRSSTPSIHCLLR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 3 | 3 | - | – | |
| SignalP_EUK | 1 | 19 | 19 | - | – | |
| Phobius | 1 | 19 | 19 | - | – | |
| ProSiteProfiles | 1 | 17 | 17 | 5.0 | – | |
| Phobius | 4 | 14 | 11 | - | – | |
| TMHMM | 5 | 27 | 23 | - | – | |
| SUPERFAMILY | 8 | 385 | 378 | 8.49E-109 | ||
| PANTHER | 9 | 383 | 375 | 2.7E-149 | – | |
| PANTHER | 9 | 383 | 375 | 2.7E-149 | – | |
| Phobius | 15 | 19 | 5 | - | – | |
| Phobius | 20 | 386 | 367 | - | – | |
| Gene3D | 21 | 383 | 363 | 1.9E-112 | ||
| Pfam | 51 | 371 | 321 | 5.7E-77 | ||
| SMART | 172 | 198 | 27 | 3200.0 | ||
| SMART | 199 | 220 | 22 | 95.0 | ||
| ProSitePatterns | 229 | 242 | 14 | - | ||
| SMART | 252 | 273 | 22 | 1700.0 | ||
| SMART | 281 | 302 | 22 | 1800.0 | ||
| SMART | 312 | 334 | 23 | 1200.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Polygalacturonase activity | Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi3g1v0075700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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