Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0075800 |
| Transcript ID | LotjaGi3g1v0075800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectin lyase superfamily protein; TAIR: AT5G17200.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q9LW07|PGLR3_ARATH Probable polygalacturonase At3g15720; TrEMBL-Plants: tr|A0A072TLD8|A0A072TLD8_MEDTR Polygalacturonase; Found in the gene: LotjaGi3g1v0075800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:8299311..8302878) extracted from Lotus japonicus Gifu genome v1.2.
AAAAGGCATTCAGAAAGAAAAAAAATTCTTCTCTTAAAGATGCAGAGGCTAATCATTGGTGTTTTTATTCTTGGTTTTGT TTCATCCTGTCTATGCCAAAACACTATTTATAATGTGATGCACTATGGTGCTAAGGGCGATGGAAAATCTGACGATTCAC ATGTATGTGCTTTCTTTTTCCTTCCTAATTTTTTCCTTTATGAGAATCTTTGGACGTGTTAATTCTTTTTCAATCATCTT TATTTTTGGTTTAATTGAAAAAAAAACATTCCATTGTTTTTCTTTTGTTTCCTTTTTACAAATTTTCACACCTAAAATAA TGAAAACAATGGAACTTTTTACTTTTAACTATTTTCCATACAAAATTTGAATCCAGGAAATTTAGAATTTTATAATTAAA ATTAATTACAAAAAATTGAAAATAAAAACCCAGAGTTTATCATTTCTATTTAATAGCAGATTTTATAAGATCTCTCCATT TTGATTTTCATGTGTCAGGCATTTTTGAGTGCATGGAAAGTAGCATGTGAGTCTGCAGAGGTAGGAACTCTAGTTATACC AGGAGGAAAAACATTCTTGGTAACGAGCATAACTACACTAACGGGTCCTTGCAAGAGCTCAAGTATTAACATTCAGGTAT AACTAATATCCAACTTGTGATTGAGCTTCTTTCAATTGGTTTTTGGTAGTCATATATGAACTTAGTTAAGAGTAGTTAGT CTAAAGTTTATATAAATTATGTGAACTTTTCTAAATTATGCTCTATTGGAAAGCTCGACATATTTTTTACTACTGAGTGT CACTCCCTCAGTTTCTTCTTTATCTGTCACAATATTAAGAAAATTTTTCTTTCTAAATTTCAAGAGATTATTCATTATGT TTTACTAATTGCAATCTTAACTTAAAATAATTCTTAATAATGATAGAAAACTTGAGGGGTAAAATTAAATATATATATAT ATATATGGTATATTAGGAAGATAGATAATAATTTAAAAAAAAAGGCTTATTATTATTACTTAATACTTGTACCAAATTCT TAAAGTGACAAATGTAAAGAAACAGAGAAGGTAAATGATAAAATGTGAAGCATTAAATATAAGGATAAATTTAGAAAAAA ATATTTAATGTTCCATAAATATTCAGGGATGACTTAAAGGAATTAATTATGGAACATGGAAAACTTATAAATTTAAGTTA TAAATAAGAATAAATGAAATATTAAATAAAAACTGAAATGACATGGAATTAATAAATGCATGTCTATCCAAATTTCTGAA CACTAAATAAACACGATAAATGAACTCTCTTGTGTTTTCCCCCTAACCTTGCAGCTTCAAGGGAACATTGTTGCACCTTC TTTTGATGCATGGGGGGCTGATAAGTCAAAATGGATTTCAATTCACTCTGTAAACCATCTCACAATTAATGGCGGAGGAA AAATTGATGGTCTAGGTTCTTCTTGGTGGGAAAGATGCAAAACTTGTTCACGGCCTACGGTATGATATCGCATCCTTTAT TTTTTCGATAGTTAATTTGTTTGATTATTTACAAATTATACTATATATATTAAGCTACCTAAACAACATTTTAGTTGTGA AATTCCTTATGTTTATAAGTTAGTTAAATTTCCTTCATTTATTTTTTCAAAAGCAAAAGAGATTTTATTAAAGGTAAGAC TTGAGAAGAAACTCTCAATTTGAGCACGAATGATCACATACATACGTACCCACCACCATCTAACACCCAAAATCCGAATT TGACAATTTCTTGGGCCACATTTTCTATGCTAACAACAAAAACCAGCCCAACACCATTGCCTGAAATTAATATAGCCCAC AAAGACCCAAACAAAAATTTGAATAATGAATAAAAAAATAGGAATAAACTAACTTATTTATTTGGGTGATGCAGTCATTG AGTTTTTATTCTTGCAATGGTCTTACTGTGAGTAACCTGCACCTGGCTAATAGTCCTGGAAGTCACATAAACGTAGATGG TTGCAATGGTGCGAGATTCTCTCATATTAACATTCAAGCTCCTGCTAATAGCCCTAACACCGATGGATTTGATATTTCTG ATTCCAGACATATCATGATACAAGATTCCAACATAGCAACTGGTAACCCAAATTTTCATCTTATCAAATACAATTACTAT AATGTGCAATTTTATCATGCGTTAACTTTTTAATTAACAGGTGATGATTGTATTGCCATTAATGGTCGCAGTACCTCTTT CATCAATGCTACTCGGGTTGCTTGTGGACCAGGCCATGGGATAAGGTTACATATAATTGTATCTTATGATCATTTTTGTG TTGATAGTAAATTAAAAAGTTAATTAGTAGTTTATTATGCAAGCCTAATTGAGGTGAATTAGGCTTGATCATTTTTGTGT TGATCATTATATTGATATATTTAATTAATAGTTTATTATGGATTTAATTGAACTTAATTTCTTGATTCAATCATTAGTTT TTCTTATAATTTTTATCCCTATCTCTAAAAATCTCATCTAATTAAAATGTATGAATTATTCAGCGTTGGAAGCCTTGGAA AAAGTGGTGCCCATGAGACTGTTGAAGAGGTTTATGTATATGACTGTAGTTTCACGGGGACTCAAAATGCAGCAAGAATC AAGACAGTTTCGGTAAGTAACAAAAATATGGATAGGAAATGGAATTTTTCACACTTCTGTAACATAATATTCTTTGATTT TTTTAATAATTTCTTGATTTTAAAAATTTTAATACATGCATTTTGTTACGCATTTTAATTTCTTGATATGTTTTATGCAA AAATAAAAAAAGTTATTATCAGTGTATACAAGATATTTCATAGTTTTAGACTTTTAGTGTTTTTTGAATCTCTATTTCAT ACTCTTTCTATTTAGAAGAATGGGTCTTATTATCTTTATATTATATTATATTACTCGATAGAATTAAGTTGTCAAGATTC TTTGAATATGAATAAAATTAAAATTTTCTGTTAAAAAAATTATATTCCAATATTATCTCTCACTTCTGAATTTTTTATAT TGTAACTTTTTTGCAGGGTGGTTCAGGTTATGCAAGAAAAATAACTTTCGAAAAAATAACACTTACAAAGGCTGGCGACC CAATAATAATTGACCAATATTATGCTCAAGAGGTATCCATTTGACTCCAAATTCATGATTTACTTATTTCAATTGATTTT TATGATCATTTTCATAATTATATTTTTCTTATTTTGAATTTTTAGGATGATTCATCAGTACAAGTGAGTGATGTGACATT TCGTGGAATTCGTGGAACTTCTTCGGATGACATAGCTATAAACTTACATTGCTCCCCACCGGGTTGTTTCAATCTTGTGT TGGATCAAATTAATATTGTGTCTTCTGTACCAGGAAAGAAAACTTCTGCTTCTTGCCAAAATGCCCATGGAAGAGTTACA TCTTCTGTTCCAAGTGTCCCTTGTTTGTTGAGGTGAATTACTCTATAGGTTACCAAATACCAAATTAAAAGCTATGTAGT AAAATCAAGAGTGTCTTATTAATAAAGTTTTAGTGCAATTAAAGGACT
CDS sequence (LotjaGi3g1v0075800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGAGGCTAATCATTGGTGTTTTTATTCTTGGTTTTGTTTCATCCTGTCTATGCCAAAACACTATTTATAATGTGAT GCACTATGGTGCTAAGGGCGATGGAAAATCTGACGATTCACATGCATTTTTGAGTGCATGGAAAGTAGCATGTGAGTCTG CAGAGGTAGGAACTCTAGTTATACCAGGAGGAAAAACATTCTTGGTAACGAGCATAACTACACTAACGGGTCCTTGCAAG AGCTCAAGTATTAACATTCAGCTTCAAGGGAACATTGTTGCACCTTCTTTTGATGCATGGGGGGCTGATAAGTCAAAATG GATTTCAATTCACTCTGTAAACCATCTCACAATTAATGGCGGAGGAAAAATTGATGGTCTAGGTTCTTCTTGGTGGGAAA GATGCAAAACTTGTTCACGGCCTACGTCATTGAGTTTTTATTCTTGCAATGGTCTTACTGTGAGTAACCTGCACCTGGCT AATAGTCCTGGAAGTCACATAAACGTAGATGGTTGCAATGGTGCGAGATTCTCTCATATTAACATTCAAGCTCCTGCTAA TAGCCCTAACACCGATGGATTTGATATTTCTGATTCCAGACATATCATGATACAAGATTCCAACATAGCAACTGGTGATG ATTGTATTGCCATTAATGGTCGCAGTACCTCTTTCATCAATGCTACTCGGGTTGCTTGTGGACCAGGCCATGGGATAAGC GTTGGAAGCCTTGGAAAAAGTGGTGCCCATGAGACTGTTGAAGAGGTTTATGTATATGACTGTAGTTTCACGGGGACTCA AAATGCAGCAAGAATCAAGACAGTTTCGGGTGGTTCAGGTTATGCAAGAAAAATAACTTTCGAAAAAATAACACTTACAA AGGCTGGCGACCCAATAATAATTGACCAATATTATGCTCAAGAGGATGATTCATCAGTACAAGTGAGTGATGTGACATTT CGTGGAATTCGTGGAACTTCTTCGGATGACATAGCTATAAACTTACATTGCTCCCCACCGGGTTGTTTCAATCTTGTGTT GGATCAAATTAATATTGTGTCTTCTGTACCAGGAAAGAAAACTTCTGCTTCTTGCCAAAATGCCCATGGAAGAGTTACAT CTTCTGTTCCAAGTGTCCCTTGTTTGTTGAGGTGA
Protein sequence (LotjaGi3g1v0075800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQRLIIGVFILGFVSSCLCQNTIYNVMHYGAKGDGKSDDSHAFLSAWKVACESAEVGTLVIPGGKTFLVTSITTLTGPCK SSSINIQLQGNIVAPSFDAWGADKSKWISIHSVNHLTINGGGKIDGLGSSWWERCKTCSRPTSLSFYSCNGLTVSNLHLA NSPGSHINVDGCNGARFSHINIQAPANSPNTDGFDISDSRHIMIQDSNIATGDDCIAINGRSTSFINATRVACGPGHGIS VGSLGKSGAHETVEEVYVYDCSFTGTQNAARIKTVSGGSGYARKITFEKITLTKAGDPIIIDQYYAQEDDSSVQVSDVTF RGIRGTSSDDIAINLHCSPPGCFNLVLDQINIVSSVPGKKTSASCQNAHGRVTSSVPSVPCLLR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 19 | 19 | - | – | |
| SignalP_EUK | 1 | 19 | 19 | - | – | |
| ProSiteProfiles | 1 | 17 | 17 | 5.0 | – | |
| Phobius | 1 | 3 | 3 | - | – | |
| Phobius | 4 | 14 | 11 | - | – | |
| SUPERFAMILY | 7 | 383 | 377 | 3.77E-108 | ||
| PANTHER | 9 | 381 | 373 | 6.5E-150 | – | |
| PANTHER | 9 | 381 | 373 | 6.5E-150 | – | |
| Phobius | 15 | 19 | 5 | - | – | |
| Gene3D | 18 | 380 | 363 | 1.0E-112 | ||
| Phobius | 20 | 384 | 365 | - | – | |
| Pfam | 51 | 369 | 319 | 4.6E-79 | ||
| SMART | 172 | 198 | 27 | 960.0 | ||
| SMART | 199 | 220 | 22 | 580.0 | ||
| ProSitePatterns | 230 | 243 | 14 | - | ||
| SMART | 253 | 274 | 22 | 1700.0 | ||
| SMART | 282 | 303 | 22 | 3100.0 | ||
| SMART | 315 | 337 | 23 | 3500.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Polygalacturonase activity | Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi3g1v0075800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…