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LotjaGi3g1v0076100.1

Overview

Field Value
Gene ID LotjaGi3g1v0076100
Transcript ID LotjaGi3g1v0076100.1
Lotus japonicus genome version Gifu v1.2
Description Ribosomal RNA large subunit methyltransferase J; TAIR: AT3G25470.1 bacterial hemolysin-like protein; Swiss-Prot: sp|P19672|YQXC_BACSU Putative rRNA methyltransferase YqxC; TrEMBL-Plants: tr|K7KE27|K7KE27_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0076100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:8335868..8342457) extracted from Lotus japonicus Gifu genome v1.2.

GGGTAGATGTGTGAGTCTATCCTATTATCCTATCACCAGCGACCCACATGAAGTTTCCGTTCCGGGTCCCTGTTTTAGTT CAAACATGATGATACTACAAAAAAAATCAAAAGTTGGTAGGCACCGTCCGTAACTATTCACTTCTTTGCCCGTGAAAGCC ACATCAGAAAATGGCGTTACAGTTTCTGAAGCAGCACCCCTTAGGTTTTCAGAGCGAAACAGCCCTATCATTCCTCTCTC GGTTTCGCAATCTAAACCTCCATGCCACAGGTACCATCATCTCTCTGAGCATTCCATTCCATTCTGTTAACTTATAGGTA GACATAAGTGCTTATCCATAATCTAATTTGAGTTGGTTATGAAAATAAATTCAAAATAGCCTATAAGTATGTCATGATAT GGTATAAGATATACTCAATAAGCTCTTTCAAACGCGGCGGCCTATGTAGCTTAGCTTATCCCCATAACTGATTATGAGGT GTTGTGATTTCGCGAGGCGAATCAATGCTCTTTCTTTATTTTGTTATTATTATTGTTACTATCATAGTATCACTATAGCT TGGAAGGCCATTTATCTGTACAAGTTGTAGGAAAATTAACTCTTAGTCTTAGATGAAACTGTATATTGGAACGTGTGATT CACTGATACTTTACTTTTTTTTGTGGAAATTAACTTCAGTGAGTTCAATTGATGGTCATGTTCCAGCTTCCTTTAGGAGC TATGCGACTGCGAAATCGGAAAAGATTGTACCTGTGAAGAAGTAAGCTTTCCGTGCTTTAACCACCGTGTTCTTTCTTCG CATCATCAAGTTCTGTTTGTTCATTATTATGTAATTTGCCCATTTCATGAGAGAACAAAATATTGCCATGCTTACTATTG TGTAAAGTAATTTGGATTGAGGATCACCATAAGTATTAGATGAAGACATGTAGTTGGTGAATTGAGAAACTAAAATGAAC ATATTGAAAAAGGACAAAAATGTAATGACCTCAAAACCTTAATTTTACAATTAAAAATTAAGAGAGGAAATTTCACTTAG AGGATGATAAGATATGCTCTTAAACGTTAGGAAATAGTTATGATTACAACATAATGATTTTCTTATCACCCATCCCCTTT GAAATACCGATGACACTGAGATGCTTTATATATATTTGTGCATTTACTTTCAGGAAAAAGCGGTTGGATGAAACATGTCT TGATAGATATCAACAATATAGTAGATCCATCATTCAGTCATGGATTTTGCAAGGTAATTGCTTAAATTTTTTATACATGT ATATAGTATAAATAAATGATATAAAACGTATAACATAATCAGCATAGTAGTCATCCTGCTATGCACTATGCCACTCTAGA ATTTTGGGTTGGCCACACACACCGCTATCCAGGATTGGCAACACTGAGATGTACAACTCAAAACCCTAAGTACCATTACT AATACAGTTCAGAAGCTCATTCGTTTTGTCTTCCATTCTCTTTATGCTATTTTGATGTTTATTTTCGCAATCAAGAGTAG TTTTCCATGCAGACTCTAATGAGAAAAAGAGAAAATGTATTACTATATAAAACTGATAACGTATATGATACAGGCAAAGT ACGTGTGAATGGGAAGGTGGTAAATAAAGCTGGTACCCCTGTGTCTGAAAAAGCTGTTGTGGAGATAATGGCTGAAGTTC CGAAATACGTATGTAGGTGAAGCCATCAAGCTCTATTTACTTGAAATAATATCTGAACAGCAACTTTAATGAAACTGTAT TATTATTTGGCTTTTTTTTTATAACACAGAGCTGGATATAAGTTGGAAGCTGCCATTGAACAGCTGGGTGTTGATGTTGC TGGTAAAGTAGCTCTTGATTCTGGACTGTCAACTGGAGGATTTACTGACTGCTTACTTCAGTATGGTGCATCACATGTTT ATGGAGTGGACGTAGGTTATGGACAGGTAACTTGTTAAATAGTAGTTTATGGCATACTTTGGAGGTGCAAGCACCTGGAA GGGGTGGGCGAATGTGACTTGGTGGAGGATTGAACTTCTGACATCAATATTGCACACAAGCTCTCAAGGCTTGGTTGGTG CCAAATGCCAATTAACTAGAGAGTGTGTGTTGAGAAGTCCCACATTGACTAGAGATATGACCAAGGGAATCCTCAACTCT TGAGCCTGCTTTTGGGTTGAGTACTTGAGTTAGGCCTCCCAAATTCTAATACGTATTCCCACTCTCCTTCTTGTCCATGT GGTTCTTCTTACTTGGTTAATGCTGGTTTAACAGGTGTTCCTGTTGGGATCTTTATTCCAGATTTTTTTACCCTAAATTT CTTTGTTCATATCTTTTTTATGGGCCTGTTTTCTTTTCTTTTTGAAATAAATTCTTTTTTAAAATATGAAATTCATAAGG GACCATCAGCAGATGGATGAAATAATGACAAATGACAACCAACAACCTCATTTCTTATAGTTGCAAGTAAAATGTAAACA ACATTTAGATATATCAGTTGTTTATCAATAACAATACTTCATTCTCCATGTTTTCTTGAAGGGTTACGGGTAGAGTTGTT ACTACTGGTTTACAGCTGAAATATCAATGTCTACTGTTTATCAATAACAATGCAGCCCATAAATTTTTTATTTTATTAGA ATGTAATTTGCAGAGATCTTAGTTTGAGTAAAATAAAACATATATGGGCTGCATTGGACATATATTATGGAATTTGATCT ATAAGGCTTTTTGTTTGAACTTCTGCAGTAATATGTTTAAATTTTAATAATTTGAGAACTTTTTTTGCAACTCCAGTAAA CTCATCTCAATAATTTCTCTTATTTTTTAAGTTAAGCAAGAATGTGAAGCATTTCCTTTGGAGTCTATTTGTTTCACATT CTTCTTTCTGAGGTTTTATACACTATTCTTATTTTCATTTAGCCTTTCACTAAATGCACTATTTTATTGCATATCGATCA ATGCTGCTTAGAGATTCTCTATTGGAATTCGGTAATGATTGTTAACTTATTTAGGTAGCTGATAAAGTTCGACGAGATGA ACGTGTGTCTGTTATAGAGCGGACAAATTTAAGATATCTTGCAGAGCTCCCACAAAACGTTGATTTGGTGACTTTGGACC TCTCATTCATCTCTATTCTTCTGGTAAGCTCTAAAATTAGGTTACATAGTCCTATACTCCTCTTACTGTTCCTAAATAGA TTCATCTCTAGTCCGAAAATTGTATTGGACCTGCATATTTAAACAAGAAGCTAATCCATTTATTAGTCTGCTTCTTCTTA TTCCACTGAATTTAGTCAAAAGTGTTTTAAATATGGTAGAACCAGGGGGTTATTCTGGTTTGGGTGGTCGAGCAGAGCAC ACTTTTTTGACTTGGCAACATTTTAAGATGGCATGTTATATAGTTAGAAATGGCCTGGGATGCTCATGTGGGGATCAAAC CTGGGCACCCTATGGTCATCTATTTGTCAATAAATGTTTTACAATTTTACTATTCATAGTATTTTTTTAAAACATGATTT AGTTCTGTGTATATATATAAATAAGATTCTAATAGGAATTCTGTTTATCCTTTAGTTGATACGCTGAGTGTGAACCACAT CTCTTCCAGTTACTGATCTGTTTTGACAAAAATAGAAAAGAATAGTTACCAATCTGGTTTTCAGAACTCTGGTCTTTACT TCTTCATTTCCTCAACTTCCATGTTATGACTTGTAACGATGATTTGTATTTTGCTTCTAAAAGATCCTAAAACATAATTG AAATTAGTTAGAAGATTTTTCGTTTGCATAAGCTGTATCTTATGACACAATCCCTCTATTGTGAATGGCATACGAACAAT TTTACTATTTATAGTATTTTAATATTAGAACTGTACCATCATGATCTTGTTTCCTTGTTGCATTGGTTGTTAACTGGTTG ACACTAAACCACCCTTATTAAGCTACTAGAGAAGGATAAGGATAGGAGACATTTGATATGATTTGCACTGATCTATATCT TTTAGTTACCTGTATGATAGATAGGCCTTGTTGATCCACTAAACGGTCTTCTATTCTCTTAACAGGTCATGCCTGCAGTT ATCAATGTTATGAAGGAAGATGCAGAATTAGTGACGTTGGTTAAACCACAATTTGAAGCTCTCAGATCTCAGGTAAGAAA TACAAACTCCTATTATATTCTTTTTCTGTCTGCTTGGATGTTTCCAGCAATAATAACAGGTCAAAATTCTCTTCTTGGCT ATTAGGATATGGAGTCACTATAGGTTACTGTGGGTGAACGCAAAGATAAAAATATTCACTTCTTTATTTTCTTGACTCGC ATTTTCTTTCTCTTTTGTCTTGATTCATGAGAGATTTCATGGGAGTGTTTGGGGAACTTAGCTGTGCCCTGAAGTTTGGA TCAATTTCTGCATAAATGTCGGAGATGTTGGTAGGAGGAAGGAGTTTAGTGTGTTACATAGGTGTGGTTTTCATGGTTTC TTTAGCTGGAGTGGAATGGTTGGATATATATGGAAATGCATAAGCACTTATTCATAAGCTATTTTAATTTTTTTATTGAA ATAAATTGAAAATAAGCTATATATAAGCATAAGCTCTTTTTCATAAGCTATCCTGAGTAGCTTATGAAAATAAGCTCAAA ACAGCTTATGGTAGGCCATAAGCTGTTTGCATAAGCTCTCCCAAACACGGGCATAAGAGCTTATGGTATCAGATAAGCTC AAATAAGCTCTTCCAAACGTGGCCTAAGTTCATACGGACTGCCATTGTATAATCATCTCACATTGCGTAAAAATGTAAAC CAGTCTTTTCCAAATTAATCTCCCATCCTCGATTGGGAAGAGCATTACAACATTCTGTGCAATTAGCATTGAGGTTTTTT AGAAAATAATCACCATTGTTGTTGCAGTCTCCTTGAAATAAAGGGGAAACATGAAACTATTTCTAAATTGGGAATATCAT CTTCTGTGCAGGTAGGAAAAGGGGGGATTGTGAAAGATCCCATTGTCCATCAAGAGGTGAGTGGTTTTGGCTCTTTGATC TGCTTGTTTATTGTCATCAATGTTCAAAATATAATTATGGGAAATCTAAATATTAGAGGACGAATGGCATGCGAAATCAC ATTCACACAAACAAAATGCTTTATATTCTGCCCTCCATTCAATTTTATGATTTACCCCCTTCTAAGTTTCAAATAAGTTA AATCTAGCCTTCACACCTTGTATGAAACAATGTAGTGTTTTTGGCTTCTCTATGGGTTTCTGCTTGTGGTGTTCTAAGCG AGACTCTCAACAACAAAGGGATTAGAGAAATCTTTTAAGCTAAAACTGAAAAGTGACTGATTTCTGCAATTCAGGTTCTT GAGAAGATTAGCAAGGGAGTAGAGAATTTTGGTTTCTGCAGAAGAGGTTGGATTGAGTCTCCTCTGAAAGGTGCCGAGGG AAATACGGAATTCCTTGTTCATTTCAGCAGAACCCATAACAGAGATGAATCATGAAGAAATTGGAGAATTTATATTTAAT TTAATGCATTTCTTCAATCCTTAACATGCGGGAGAGCTGTATTCTTTGTATAGTGACGAGTTGTTGAAGCCATTGAATGG TGGTGGTGGAATTTTGTATGAACCATTAAAAGAAATGAGCAGGGATTAGTAGAATTTGTGAGATATAACTCTACCCTAAA AGCTAGCTCAATAGGTGAGAATTGTCTTCACATATATAAAGGCTATCTTAGTCATATCTCTTGTCAATGTGAGACTTCTC AACACATCACATCATGCCCATGACTGGATATCTGGAGCGTGGAATATGCAGGAATGAACATATACAGGTGATCTCCACTT AACGAATCTAGGATAGGCTATGATATCATAATAGAATTTGTGAGACATAACTCTACGAAAAGCATGCCAAATAGGTGAGG ATTTTCTTCACATATATAAGAGTTATCTTGGTCTATCTCTAGTTAATATGTGTAGACTGAATAATGTGATGATTAATATA TACATGGCGCTTTGGGCCTGGAAATGTAATAAACAGCTGTATCTGTTAAACTCCTTACATACCACTTGGACATACATATT CCTTTTAGTTTCACCTTTGGTTATGGATACATGTCATATAGGGGGAGGACCTGCTTAGTTGGAATTGATCCTGTGTTTAT TGAGTGTTAAAATTACAAATTTTATGTCAACAGGCTGAACAACAACATTTCATGTCACTTGTTACCACGTAGTTTAAAGA AATAATATTGGAAGAAATAATATTTTCGTATACTATATTATAATTTGAGTTTGGGTATGCTAAAATTGTTTATGAGGCTC CCCGCAGATATTCTAGACTATAGATGTTCAGTCATAGGTGAAAAGGTTGTGTAGAGGTCCATATTAATTAGATATATGAT CAAAGTAGTTCTTATAAAAGGTAGAATAATTCTCGCACTAGAACTAGTTCTTATGGTAGATTGTAGAATAGGATTTAACT CGTATTCTAATAGACTAAATCAAAGAAAAAGTGTTTGAAAAATTGGATCACGGTAGTTCAAACTATTCAACAGATTTTCT CTTGATTATTTCTAACAGAATACAAAATTT
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0076100.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCGTTACAGTTTCTGAAGCAGCACCCCTTAGGTTTTCAGAGCGAAACAGCCCTATCATTCCTCTCTCGGTTTCGCAA TCTAAACCTCCATGCCACAGTGAGTTCAATTGATGGTCATGTTCCAGCTTCCTTTAGGAGCTATGCGACTGCGAAATCGG AAAAGATTGTACCTGTGAAGAAGAAAAAGCGGTTGGATGAAACATGTCTTGATAGATATCAACAATATAGTAGATCCATC ATTCAGTCATGGATTTTGCAAGGCAAAGTACGTGTGAATGGGAAGGTGGTAAATAAAGCTGGTACCCCTGTGTCTGAAAA AGCTGTTGTGGAGATAATGGCTGAAGTTCCGAAATACGTATGTAGAGCTGGATATAAGTTGGAAGCTGCCATTGAACAGC TGGGTGTTGATGTTGCTGGTAAAGTAGCTCTTGATTCTGGACTGTCAACTGGAGGATTTACTGACTGCTTACTTCAGTAT GGTGCATCACATGTTTATGGAGTGGACGTAGGTTATGGACAGGTAGCTGATAAAGTTCGACGAGATGAACGTGTGTCTGT TATAGAGCGGACAAATTTAAGATATCTTGCAGAGCTCCCACAAAACGTTGATTTGGTGACTTTGGACCTCTCATTCATCT CTATTCTTCTGGTCATGCCTGCAGTTATCAATGTTATGAAGGAAGATGCAGAATTAGTGACGTTGGTTAAACCACAATTT GAAGCTCTCAGATCTCAGGTAGGAAAAGGGGGGATTGTGAAAGATCCCATTGTCCATCAAGAGGTTCTTGAGAAGATTAG CAAGGGAGTAGAGAATTTTGGTTTCTGCAGAAGAGGTTGGATTGAGTCTCCTCTGAAAGGTGCCGAGGGAAATACGGAAT TCCTTGTTCATTTCAGCAGAACCCATAACAGAGATGAATCATGA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0076100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MALQFLKQHPLGFQSETALSFLSRFRNLNLHATVSSIDGHVPASFRSYATAKSEKIVPVKKKKRLDETCLDRYQQYSRSI IQSWILQGKVRVNGKVVNKAGTPVSEKAVVEIMAEVPKYVCRAGYKLEAAIEQLGVDVAGKVALDSGLSTGGFTDCLLQY GASHVYGVDVGYGQVADKVRRDERVSVIERTNLRYLAELPQNVDLVTLDLSFISILLVMPAVINVMKEDAELVTLVKPQF EALRSQVGKGGIVKDPIVHQEVLEKISKGVENFGFCRRGWIESPLKGAEGNTEFLVHFSRTHNRDES
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR32319
34 305 272 5.4E-156 –
PANTHER
PTHR32319:SF4
34 305 272 5.4E-156 –
Gene3D
G3DSA:3.10.290.10
52 113 62 8.6E-16
IPR036986
SMART
SM00363
63 128 66 1.5E-9
IPR002942
ProSiteProfiles
PS50889
63 123 61 12.72
IPR002942
CDD
cd00165
63 112 50 1.39853E-9
IPR002942
SUPERFAMILY
SSF55174
63 115 53 2.06E-10 –
Pfam
PF01479
64 110 47 2.3E-10
IPR002942
TIGRFAM
TIGR00478
64 293 230 2.5E-65
IPR004538
Gene3D
G3DSA:3.40.50.150
114 307 194 4.4E-76 –
Pfam
PF01728
119 298 180 4.1E-20
IPR002877
SUPERFAMILY
SSF53335
119 300 182 1.99E-21
IPR029063
CDD
cd02440
144 223 80 0.00239294 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:0008168
Molecular function Methyltransferase activity Catalysis of the transfer of a methyl group to an acceptor molecule.
Subterm of
GO:0032259
Biological process Methylation The process in which a methyl group is covalently attached to a molecule.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0076100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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