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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0078700 |
| Transcript ID | LotjaGi3g1v0078700.6 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chlorophyll a-b binding protein, chloroplastic; TAIR: AT5G54270.1 light-harvesting chlorophyll B-binding protein 3; Swiss-Prot: sp|P27489|CB23_SOLLC Chlorophyll a-b binding protein 13, chloroplastic; TrEMBL-Plants: tr|I3T7A0|I3T7A0_LOTJA Chlorophyll a-b binding protein, chloroplastic; Found in the gene: LotjaGi3g1v0078700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:8678543..8680400) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCAGCAACATTGATGGCAGCCACCACTGCAAGCTCTGGCACTGTGATTAAACCAAGTCCTTTCCTTGGCCAAACCAA GGGTTCCAACTCCAACACTCTTAGAGATGTTGTCTCTATGGGAACTGGGAAATACACCATGGTACTCTTCAACAACTCTT TTTACTTCACTTTTTGTCTCAATCACTCTCATGCACCATTGACCATAGCTTAGTACTTGTTTGAAAATTCTTCTACAATT AATTCTAAAAAAGTCAGGATCAATTCTGAGTAGTAGCTTCTAAGTTCCAGAACTGAATTGATTTTGATGAAAGAGAAGTT GATCCAAACATGCTTTTAATAGTGTTGGTTGTGACTTGTGAGGCTGATACAATATTGGGTATGTGTTTGTGAATGTGTAG GGAAATGATTTGTGGTATGGACCAGACAGGGTGAAATACTTGGGACCCTTTTCAGCTCAGACCCCTTCATACTTAACTGG AGAATTCCCAGGTGATTATGGATGGGACACTGCTGGGTTATCTGCTGACCCTGAAGCATTTGCCAAGAACAGGGCTCTTG AGGTGAGTTTTTCATACTTAGATTGCAACATGATGGCTCTTTCTCATTCCTTTTTTGTACTTTACTTCTCAGAAGATTTC AATTATAGAAAAAAGCCAAAATGCTATGAACTTTTCTAGTTTTCACTAGCAATCATTCATTCAGCTGCTTTTATTTTACA TATTTTAATGTCCGTCCTGCCGTTAGGCACTGGTTAATGAATTGAAAGACTAATTCTTTACTGAAGAGAATAACCTTCAA TGAATTGATAAAATGAAAAATGGAAGCTCATATCCTCTTTCCTTATTATTCACTAATTAAAATGCTAATTTTGAAATTCA TTATTATCTATCATGGCAGATGAAGATCTTCTGTCTTTGTTTGATGTTTTCTTCTCTGTCCCACCAATCAAATTGTGCCA TGTACATACTCATGCCTACATGACACAATTTGATTGGTGTGACATGGAAGATGACATCAAACGAGAAGGGGGATTTCGGG CCCTGTCATGACATATATTTGTGACACCATACATTCACTTATTAATCATTTACCAGAGATGGCACCAATTAGGAAGGCAT GATGATAACCCTTTCCTTCCCAAAATTAAATACTACACTTCTCAAACAATACATTTCACTTTTGAGTTTTGACTCCTTAA TTGGTTACCATTTGCCTTATAGTATAAAGGCCTCAATTTCAATTAATCTTTTACAACAAGCATCTTCTTTCATGGTGTGG ATTTGATTCATTTGTCATGATGAGACCAACAATGAAACTAAATTGTTATATGATGTATGATATATAAGGTGATCCATGGG CGTTGGGCCATGCTTGGAGCACTAGGCTGCATCACCCCAGAAGTACTAGAAAAGTGGGTTCGTGTGGACTTCAAAGAGCC AGTATGGTTCAAAGCAGGATCCCAAATTTTCTCAGAAGGAGGCCTTGACTACTTAGGCAACCCCAACCTCGTCCACGCAC AAAGCATCCTCGCAGTGCTAGGCTTCCAAGTTCTTCTCATGGGTCTTGTCGAAGGCTTCCGCATCAACGGCCTTCCCGGA GTCGGAGAAGGCAACAACCTCTACCCTGGTGGCCAGTACTTTGACCCTCTCGGCCTCGCCGACGACCCTGCCACTTTCGC TGAGCTTAAAGTGAAGGAGATCAAGAATGGAAGGTTGGCCATGTTCTCCATGTTTGGTTTCTTTGTTCAAGCCATTGTCA CTGGGAAAGGACCCTTGGAGAACCTTTTGGATCACCTTGATGACCCTGTGGCTAACAATGCCTGGGTCTATGCCACTAAG TTTGTGCCTGGGTCTTAA
CDS sequence (LotjaGi3g1v0078700.6) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGCAACATTGATGGCAGCCACCACTGCAAGCTCTGGCACTGTGATTAAACCAAGTCCTTTCCTTGGCCAAACCAA GGGTTCCAACTCCAACACTCTTAGAGATGTTGTCTCTATGGGAACTGGGAAATACACCATGGGAAATGATTTGTGGTATG GACCAGACAGGGTGAAATACTTGGGACCCTTTTCAGCTCAGACCCCTTCATACTTAACTGGAGAATTCCCAGGTGATTAT GGATGGGACACTGCTGGGTTATCTGCTGACCCTGAAGCATTTGCCAAGAACAGGGCTCTTGAGGTGATCCATGGGCGTTG GGCCATGCTTGGAGCACTAGGCTGCATCACCCCAGAAGTACTAGAAAAGTGGGTTCGTGTGGACTTCAAAGAGCCAGTAT GGTTCAAAGCAGGATCCCAAATTTTCTCAGAAGGAGGCCTTGACTACTTAGGCAACCCCAACCTCGTCCACGCACAAAGC ATCCTCGCAGTGCTAGGCTTCCAAGTTCTTCTCATGGGTCTTGTCGAAGGCTTCCGCATCAACGGCCTTCCCGGAGTCGG AGAAGGCAACAACCTCTACCCTGGTGGCCAGTACTTTGACCCTCTCGGCCTCGCCGACGACCCTGCCACTTTCGCTGAGC TTAAAGTGAAGGAGATCAAGAATGGAAGGTTGGCCATGTTCTCCATGTTTGGTTTCTTTGTTCAAGCCATTGTCACTGGG AAAGGACCCTTGGAGAACCTTTTGGATCACCTTGATGACCCTGTGGCTAACAATGCCTGGGTCTATGCCACTAAGTTTGT GCCTGGGTCTTAA
Protein sequence (LotjaGi3g1v0078700.6) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAATLMAATTASSGTVIKPSPFLGQTKGSNSNTLRDVVSMGTGKYTMGNDLWYGPDRVKYLGPFSAQTPSYLTGEFPGDY GWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQS ILAVLGFQVLLMGLVEGFRINGLPGVGEGNNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTG KGPLENLLDHLDDPVANNAWVYATKFVPGS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 13 | 13 | - | – | |
| Phobius | 1 | 1 | 1 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 24 | 24 | - | – | |
| PANTHER | 2 | 270 | 269 | 1.6E-126 | – | |
| PANTHER | 2 | 270 | 269 | 1.6E-126 | ||
| Phobius | 2 | 9 | 8 | - | – | |
| Phobius | 10 | 13 | 4 | - | – | |
| Phobius | 14 | 270 | 257 | - | – | |
| SUPERFAMILY | 51 | 267 | 217 | 1.31E-75 | – | |
| Gene3D | 59 | 263 | 205 | 2.0E-87 | ||
| Pfam | 69 | 236 | 168 | 1.9E-50 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Photosynthesis, light harvesting | Absorption and transfer of the energy absorbed from light photons between photosystem reaction centers. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of LotjaGi3g1v0078700.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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