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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0081800 |
| Transcript ID | LotjaGi3g1v0081800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT3G01580.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9SS97|PP205_ARATH Putative pentatricopeptide repeat-containing protein At3g01580; TrEMBL-Plants: tr|A0A0B2QY92|A0A0B2QY92_GLYSO Putative pentatricopeptide repeat-containing protein; Found in the gene: LotjaGi3g1v0081800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:9151395..9154032) extracted from Lotus japonicus Gifu genome v1.2.
TTTTTTTTCTCATTCTTTTCTGTTCTCCCAATTTTCTTCAACCTACCCTGATGATGAGTAATGACATTGCAAAAAGTGTT GTGCTTGCCATCTTATATACAGGAAAATAAGCGTGTTGCCAGGGAACTTGAATAACCTGCCAAGTAACTGGTTTAGTCTT TGTACATGAAAAGGAGGGATCTTATAGCAACACTTTTGGAAACTTGCCACTGTGAGAAATCAACATCACAGTTACACTCA CTATGTTTAAAACTTGGCCTCACCCATGATAGTTTCATTGTGACAAAGCTCAATGTTCTTTATGGCAAACACGCTTCCAT CCACCATGCACATAAGCTGTTTGATGAAACGCCTGACAAGTCTGTCTACCTATGGAACGCTCTGCTTAGGCGATATCGTG CTGAGGGTGAATGGGCAGAGACGTTATCGCTATTCCGGCGAATGCATGCCACTGCGAGACCGGATAGTCACACGGTATCT ATCGCGTTGAAGTCGTGTGTGGGTTTGCAGAAGCTTGAGGTGGGGAGGATGATTCATGGATTTCTCAAGAAGGAGAATTT AGATGGTGACATGTTTGTCGGGTCGGCGTTGATTGAGCTGTATTCAAAATGTGGAGAAATGAATGATGCTGTGGAAGTTT TTATGGAGTATCCGAAACCGGATGTGGTTTTGTGGACTTCGATAGTAACGGGTTATGAGCGGAGTGGTACTCCTGAGCTC GCGCTCGCGTTTTTCTCACGAATGGCTGTGTTGGAGGAAGTGAGTCCGGATCCGGTGACACTTGTTAGCGCTGCTTCGGC TTGTGCTCAGTTATCTGATTCGAAGCTTGGAAGAAGTATACATGGTTTTGTAAAAAGATGTGGTTTAGACACACACTTAA GTTTGGCTAATTCATTGCTAAATTTATATGGAAAAACTGGTTCTATCAAGAGTGCAGAAATTTTGTTCAGGGAAATGCCT GATAAGGATGTTATATCTTGGAGCTCAATGCTTGCCTGTTATGCGGATAATGGAGCTGCAACTAATGCATTAGACCTTTT CAATGAAATGATAGATAAGAGAATTGAGCCCAACTGGGTTACTTTGGTTAGTGCATTGAGAGCATGTGCTTCAGCTTCTT ATTTGGAAGAAGGTAGGAAGATTCACCAATTAGCTGTCAGTTATGGTTTTGAGCTGGAAACCACTGTCTCTACAGCTCTG ATGGACATGTACCTGAAATGCTCCTCACCGGAAAATGCAGTTGATATTTTCAACAGAATTCCGAAAAAGGATGTAGTTGC TTGGGCTGTTCTGTTTGGTGGCTATGCTGAAACTGGCATGGCACACAAGTCAATGGAAGTTTTCTGCAACATGTTATCGG ATGGAGTTCGACCTGATGCCGTGGCTCTAGTGAAGATACTCACAGCTATTTCAGAATTGGGGGTTCTTCAGCAAGCTGTA TGTCTTCATGCTTTTGTAACTAAAAGTGGATTCGACAATAATGAGTATATTGGTGCATCTCTCATAGAGATGTATGCAAA ATGTAGTAGCATAGATAATGCTAACAAGGTTTTCAGAGGAATGGCATATAAAGATGTTGTTATCTGGAGCTCGATAATTG CAGCTTATGGATTCCATGGGCAAGGAGAAGAGGCTTTGAAATTATTTTATCAGATGGCTAACCATTCAGATCTTAAGCCT AACAAAGTAACCTTCATTTCAATTCTATCTGCCTGTAGTCATGCAGGTTTGGTTGAAGAAGGGATAACGATATTTGATAT AATGGTGAACAAGTATCAATTGATGCCCGATTCAGAGCATTATGGGATAATGGTTGATCTTCTTGGTCGTATGGGAGAGT TGGATAGGGCCTTGGACATTATTAATAACATGCCCATGCAAGCTGGGCCTCATGTATGGGGAGCCTTACTTGGTGCATGC CATATACATCATAATATAAAGATGGGGGAGGTTGCAGCTAAGAATCTTTTCCCATTGGACCCTAACCATGCAGGGTATTA TACACTCTTATCAAATATTTATTGTGTGGACAAGAATTGGCATAATGCTGCAAAACTTAGGTCATTGATTAAGGAGAATA GATTGAAGAAGGTTTTAGGTCAAAGTATGGTTGAGTTAAAGAATGAGGTTCACAGTTTTGTAGCTAGTGATAGATTCCAT GATGAATCTGATCAGATTTTTGAAGTTCTGAGAAAATTAGATGTGAAGATGAGAGAAGAATGTTATGAACATCAACTAAA GATAGAGGAAGTCATGTAAATTGTATTCTTCGAATGGGGGGAAGTTGTCCCATTTGAATAGCTTAAAGGATATTTACCAT TATTTGGATGCTTGACTGCATGTACTCAGATTGGGGAGGAAATTTTTTTGGGTTTGTTATTGTTTGTTTCTTTGTTTTGG TTCTCAAGATTGTTCTTTTAGTTGCATAATTACAAGTGAAGTTCTGAACAAGTATATACATGTTGAAAGCATTAGCAACT TGTATATACTTTGTGTTAGGATTTTGGATGAAAGATTCATATTAGTTCAAACCTGCCTTGGAGACCCATCTATATAATAT TTTTTAGGGAAGTAAGTATCTATATAATATTAAAACAACAAGTCCCCTTTTTTGACATTATTTTATTTCATCCTCACT
CDS sequence (LotjaGi3g1v0081800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAAGGAGGGATCTTATAGCAACACTTTTGGAAACTTGCCACTGTGAGAAATCAACATCACAGTTACACTCACTATG TTTAAAACTTGGCCTCACCCATGATAGTTTCATTGTGACAAAGCTCAATGTTCTTTATGGCAAACACGCTTCCATCCACC ATGCACATAAGCTGTTTGATGAAACGCCTGACAAGTCTGTCTACCTATGGAACGCTCTGCTTAGGCGATATCGTGCTGAG GGTGAATGGGCAGAGACGTTATCGCTATTCCGGCGAATGCATGCCACTGCGAGACCGGATAGTCACACGGTATCTATCGC GTTGAAGTCGTGTGTGGGTTTGCAGAAGCTTGAGGTGGGGAGGATGATTCATGGATTTCTCAAGAAGGAGAATTTAGATG GTGACATGTTTGTCGGGTCGGCGTTGATTGAGCTGTATTCAAAATGTGGAGAAATGAATGATGCTGTGGAAGTTTTTATG GAGTATCCGAAACCGGATGTGGTTTTGTGGACTTCGATAGTAACGGGTTATGAGCGGAGTGGTACTCCTGAGCTCGCGCT CGCGTTTTTCTCACGAATGGCTGTGTTGGAGGAAGTGAGTCCGGATCCGGTGACACTTGTTAGCGCTGCTTCGGCTTGTG CTCAGTTATCTGATTCGAAGCTTGGAAGAAGTATACATGGTTTTGTAAAAAGATGTGGTTTAGACACACACTTAAGTTTG GCTAATTCATTGCTAAATTTATATGGAAAAACTGGTTCTATCAAGAGTGCAGAAATTTTGTTCAGGGAAATGCCTGATAA GGATGTTATATCTTGGAGCTCAATGCTTGCCTGTTATGCGGATAATGGAGCTGCAACTAATGCATTAGACCTTTTCAATG AAATGATAGATAAGAGAATTGAGCCCAACTGGGTTACTTTGGTTAGTGCATTGAGAGCATGTGCTTCAGCTTCTTATTTG GAAGAAGGTAGGAAGATTCACCAATTAGCTGTCAGTTATGGTTTTGAGCTGGAAACCACTGTCTCTACAGCTCTGATGGA CATGTACCTGAAATGCTCCTCACCGGAAAATGCAGTTGATATTTTCAACAGAATTCCGAAAAAGGATGTAGTTGCTTGGG CTGTTCTGTTTGGTGGCTATGCTGAAACTGGCATGGCACACAAGTCAATGGAAGTTTTCTGCAACATGTTATCGGATGGA GTTCGACCTGATGCCGTGGCTCTAGTGAAGATACTCACAGCTATTTCAGAATTGGGGGTTCTTCAGCAAGCTGTATGTCT TCATGCTTTTGTAACTAAAAGTGGATTCGACAATAATGAGTATATTGGTGCATCTCTCATAGAGATGTATGCAAAATGTA GTAGCATAGATAATGCTAACAAGGTTTTCAGAGGAATGGCATATAAAGATGTTGTTATCTGGAGCTCGATAATTGCAGCT TATGGATTCCATGGGCAAGGAGAAGAGGCTTTGAAATTATTTTATCAGATGGCTAACCATTCAGATCTTAAGCCTAACAA AGTAACCTTCATTTCAATTCTATCTGCCTGTAGTCATGCAGGTTTGGTTGAAGAAGGGATAACGATATTTGATATAATGG TGAACAAGTATCAATTGATGCCCGATTCAGAGCATTATGGGATAATGGTTGATCTTCTTGGTCGTATGGGAGAGTTGGAT AGGGCCTTGGACATTATTAATAACATGCCCATGCAAGCTGGGCCTCATGTATGGGGAGCCTTACTTGGTGCATGCCATAT ACATCATAATATAAAGATGGGGGAGGTTGCAGCTAAGAATCTTTTCCCATTGGACCCTAACCATGCAGGGTATTATACAC TCTTATCAAATATTTATTGTGTGGACAAGAATTGGCATAATGCTGCAAAACTTAGGTCATTGATTAAGGAGAATAGATTG AAGAAGGTTTTAGGTCAAAGTATGGTTGAGTTAAAGAATGAGGTTCACAGTTTTGTAGCTAGTGATAGATTCCATGATGA ATCTGATCAGATTTTTGAAGTTCTGAGAAAATTAGATGTGAAGATGAGAGAAGAATGTTATGAACATCAACTAAAGATAG AGGAAGTCATGTAA
Protein sequence (LotjaGi3g1v0081800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKRRDLIATLLETCHCEKSTSQLHSLCLKLGLTHDSFIVTKLNVLYGKHASIHHAHKLFDETPDKSVYLWNALLRRYRAE GEWAETLSLFRRMHATARPDSHTVSIALKSCVGLQKLEVGRMIHGFLKKENLDGDMFVGSALIELYSKCGEMNDAVEVFM EYPKPDVVLWTSIVTGYERSGTPELALAFFSRMAVLEEVSPDPVTLVSAASACAQLSDSKLGRSIHGFVKRCGLDTHLSL ANSLLNLYGKTGSIKSAEILFREMPDKDVISWSSMLACYADNGAATNALDLFNEMIDKRIEPNWVTLVSALRACASASYL EEGRKIHQLAVSYGFELETTVSTALMDMYLKCSSPENAVDIFNRIPKKDVVAWAVLFGGYAETGMAHKSMEVFCNMLSDG VRPDAVALVKILTAISELGVLQQAVCLHAFVTKSGFDNNEYIGASLIEMYAKCSSIDNANKVFRGMAYKDVVIWSSIIAA YGFHGQGEEALKLFYQMANHSDLKPNKVTFISILSACSHAGLVEEGITIFDIMVNKYQLMPDSEHYGIMVDLLGRMGELD RALDIINNMPMQAGPHVWGALLGACHIHHNIKMGEVAAKNLFPLDPNHAGYYTLLSNIYCVDKNWHNAAKLRSLIKENRL KKVLGQSMVELKNEVHSFVASDRFHDESDQIFEVLRKLDVKMREECYEHQLKIEEVM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 16 | 16 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| Gene3D | 2 | 163 | 162 | 3.0E-17 | ||
| Phobius | 6 | 11 | 6 | - | – | |
| PANTHER | 7 | 119 | 113 | 8.1E-130 | – | |
| Phobius | 12 | 16 | 5 | - | – | |
| Phobius | 17 | 697 | 681 | - | – | |
| ProSiteProfiles | 66 | 96 | 31 | 8.331 | ||
| Pfam | 69 | 94 | 26 | 0.2 | ||
| PANTHER | 104 | 217 | 114 | 8.1E-130 | – | |
| ProSiteProfiles | 135 | 165 | 31 | 6.84 | ||
| Pfam | 140 | 161 | 22 | 0.1 | ||
| Gene3D | 164 | 268 | 105 | 1.7E-15 | ||
| ProSiteProfiles | 166 | 201 | 36 | 8.331 | ||
| Pfam | 168 | 193 | 26 | 0.066 | ||
| ProSiteProfiles | 202 | 236 | 35 | 5.305 | ||
| PANTHER | 221 | 328 | 108 | 8.1E-130 | – | |
| ProSiteProfiles | 237 | 267 | 31 | 7.541 | ||
| Pfam | 267 | 315 | 49 | 2.0E-9 | ||
| ProSiteProfiles | 268 | 302 | 35 | 11.444 | ||
| TIGRFAM | 270 | 304 | 35 | 3.2E-5 | ||
| ProSiteProfiles | 303 | 337 | 35 | 6.555 | ||
| Gene3D | 305 | 436 | 132 | 5.3E-18 | ||
| PANTHER | 333 | 425 | 93 | 8.1E-130 | – | |
| ProSiteProfiles | 338 | 368 | 31 | 6.325 | ||
| Pfam | 343 | 369 | 27 | 0.34 | ||
| ProSiteProfiles | 369 | 403 | 35 | 10.797 | ||
| TIGRFAM | 371 | 405 | 35 | 8.8E-5 | ||
| Pfam | 371 | 401 | 31 | 0.015 | ||
| ProSiteProfiles | 404 | 438 | 35 | 5.229 | ||
| PANTHER | 429 | 635 | 207 | 8.1E-130 | – | |
| ProSiteProfiles | 439 | 469 | 31 | 6.27 | ||
| Gene3D | 444 | 689 | 246 | 2.1E-32 | ||
| Pfam | 469 | 518 | 50 | 8.1E-9 | ||
| ProSiteProfiles | 470 | 505 | 36 | 9.24 | ||
| ProSiteProfiles | 506 | 536 | 31 | 8.32 | ||
| ProSiteProfiles | 542 | 572 | 31 | 7.783 | ||
| Pfam | 545 | 569 | 25 | 0.12 | ||
| ProSiteProfiles | 608 | 642 | 35 | 5.492 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0081800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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