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LotjaGi3g1v0090700.1

Overview

Field Value
Gene ID LotjaGi3g1v0090700
Transcript ID LotjaGi3g1v0090700.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description DNA-directed RNA polymerase II subunit RPB4; TAIR: AT5G09920.1 RNA polymerase II, Rpb4, core protein; Swiss-Prot: sp|O48890|NRPB4_ARATH DNA-directed RNA polymerase II subunit 4; TrEMBL-Plants: tr|I3S6N6|I3S6N6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0090700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:10280872..10286131) extracted from Lotus japonicus Gifu genome v1.2.

ACAAAAAAATTAACCAAGCCCAACTAATTGACTTAATAAAACTATGTGAAAACACAAACAATGTCATTAAAGATGGAAAT AGGTTAGGTTAGACTTTGCTTAAATAGGTTTGATCTACCAAAAAAAATTAAGACTCGAGTCTGGACCTTTTGAAAATTTG GTCTGCCTGGTAGCCTATATAAAAACTAGCATATTTAAAAACTTGTTATATAATCTCACATTTCTTTTTTTTTTCTCCAT CGGAAACTAAATAGACTTTTAAAAAAACTTTTGAATTTTTTTTTTGTAAATAGCATTTTTTACATTATTAAAAAAATGGG TTTCATGCTAGTTGTTTGACATGAATGCCGGACCAAGGCCCAAAGGCAAGTCGTTAACCAAGTCCATGTTCTGGTCCAAA GCTGTGTTGTTTAACATCTTATGAATCCGTTTTTCTGATTTGCTTCTCTCTTTGGATTCAATTCGATTCTGTTCTCTGAA ACATGTCTGGGGAAGAGGAAGAAAACGCCGCAGAACTCAAAATCGGAGACGGTAATTTCATTCTCGCTCACTCTCTTTTC AAGCATCAATCCCAATGTTGTTACATGGTAGAGTGGTAACTGGTTTTTTTGTCAAGGCTTCGTTTCAATTTTTATTTATT TATAATTCTATATGAATTTGGGAGTGTTTGATAAGGAAACATAGGGTTAGTAACATGTATATGATTTTTTTTACTATGGT CTCTTGCTAAATGCTTTAATTGTGTCATGTGTGCTGTTAAAAGCATAGTTAATGTACTTGGTGTGACAAGCTGCATCATT AGCTGGTGGATGTTATGTTACTTACATCAAAACAGAAGGATGGATGGATTGCAGATTGCATCACTAATGCATGTTGCACC AATAAGCTTTGGGATTGACTGGATATGTTCCTTTACCTTACATTTATCACATTGCTTGACAAAGAATTTTTGTGATTGTG TTGGAAGTTTAAGGACCGGGACAATAGGTCAATACTTCGAATTTCACATTCAATGTTTCGGTGTATTGTTTTTTCTTTTT TGGTGAGATAAGAAATTTTAGGGTGACTGGATGATGCCATGGTCCAAGGTTGGGGAAGCCTTTGGGTTCAAAAAATACTT ACTCAGGACTTGCATTTACCTCACCCCTAGGAGATGAATGGAGGCTCGGACCTACAATTTGGGTGTATTGGTTTTAAGGT TTAGCGTAGAGCTTTCACTTGTGATCTTCATAAATTGTTGTAAATTTTGGCGTACAACTCACTTTAGGTAAAATCTTGTT AAAGTATGTCTATTTCTCTTCTACTTGCTCTCAGTTGCATATCTAGTTATAACATATGCACTGGAGTGAAGGTTCAACTG TTAGGTAAAGTCTAACCTTGAAAAGATTTGAATATTATAGTTGGGTAAAGTAAGGAAGCAGTTAAGATTCAGAGACTTAG AATCTTAGATATTCCAGGAAGTAAAGTAATATGTATTTTCATCTGAAATCTCTAAAAATTAAACTTCAGTTTACATTGTT TCTAACTTTCAGCTTTGGTGTTTCTTTTTGAGATTTAAATCAGTGCTGTCAATCCTGTCGCATAGTGGGACTGGGATGGT CGCTACGCTGATTTTTTTTTTATAAATTTTATGCAATATATGCTATATAATACTTAAATGCTTAAAAATACGTAAGACTA CTTAAAATTCATGATATTCAAAATTAATACTAAAAAGCCACAAATGACATAAATAAATCATAAAAGTCGAACCTGTGAGA TATTAAAAAGGAGTGAATAAAATCAAAATAGAGCCCAGTTGCCTGAATTGTTGTGAGCTAGCATCATGCACAGTTGCACA CCTTCCACCTTGCAGATAACGAACTGATCGGTTCTATTGGTTTGATAGATGATTCTATTGTGTTACATCATGTTGGATTG CTTGAGCATGTTTTTAGTTTGGTATAATTGCTATCACCTTTTGATTTCACTCTAAACTCTAGATTTTTTTAGAGTTTTTG AAGGCAAAGTGCTTGATGAATTGTGAAGTTTCATTGATTCTTGAGCACAAGTATGAGCAGCTTCAACAGTCATCTGATGA TCCCATGAATCAAGTTTCTCAGTGAGTTAATTCCTTTATCATGTTTTTGTGTTATTTTGACATAAAAGTCAAAAATACAT TTTTTATGGCTTGAGAACAATGAGCTTTTACCTTAATAAAATATATAATCTGGTTTCTTAATGCTTCCAAGGTCTTTGTC TATTGATATAATTGCTGAAAAAAGTGTTCTACTGTGGTGTCCTTTAACTGTGATAGTATTCTTAAAACTTCCCAATCCCA GTTCACATTGATCCAATATTAGATTTGACATTGATTGAGATGGAAAGGAACAAAGTCGCTAACCATGATTAGCACCTTAT ATTGTATTGATATCTTCCCTCTTTTTGCAGGGTATTTGAAAAGTCATTGCAGTATGTGAAACGGTTTAGCCGGTATAAAA ATCCTGATGCTGTTAGACAAGTCCGAGAGTATCCTGCAAACTGAGATGATGATTCATTTTCTATTTCTACTTTTCCTTAT ATATATTTCAATCAAGATTTGCTGGTGTCCATTTCATGTTCTTTCATAGTTATAATTGGCCTAATTTTCTTTTGTCTATT GACATGTATCTAAGTTAGTACATCTGAGATAGTTGGTCTATGTTAATTCCATTTTTCATGAAAGGGAATAATAAGTATAC ATTGAAGTTTAAATCCTTGTATCAGAATTGTGATCTTAACTGTCATAAAGAATTCTTGCCAGATACCAATTGGCCGAGTT TGAGGTAATATTCCGATTTCCTTCATGAACTCTGTTTAGGAAACAAGTTTTCACATTTAATTCAGAAAAAAAAGTGAGCA AGTTCTCATTTTACACAATACAATATATAACTATCGGTTTAATGGATTTACTGCAGCTGTGTGTCCTAGGCAATCTTTGC CCGGAAACTGTGGAGGAAGCTATTGCTATGGTTCCATCTATCAAGGTAGATATAATTCTCTTCTCCTTTGTGTAGATTTT TCCTTATTTTTCGTGTGCGCGCGTGAGGTTGTGTGGGAGGAAGGGAGTTTTTGGTGACTGACTTAAATGGTGGTGGGCTG ACTTAAATGGTGAAAACCCCAAAGTTTCGGGCCATTTATGGGTACCTCTTCCCATGCTTGTTCATTATTTACAGATCGTT CACCATCCCCATTCATACCCGCCCACCACATGTTCCTTATTATGATGCTTTTCTTCTCTTGTTCAATATGATGGTTTCCG CCCACCACTTTGTCCTTGTGTAGTGCTTGTTCTGGTTTCATTTCTTCCTCTGAAACCTATGATAGACGACCAAAGTCATA CCTTCACTGAAATTGTTTGACAAGTGCCTTTAAGAATCCACAACCTATATCATGTTTGTTTGCGCCATCCCCTCCCTATT ATCAAGTAAGGGAAAGGCTTAGAATTTTCTTCCTTTGAAATTTGTTTTGAGCTTCTTCTTGTCCAGTATTTTCTTGATGT CTAACTGTGGCACCACTATGATTAGGCAACCATACTTATCTTTTCCATTGATCACTGATTCTCTATTGCTTCTAATGATC TGAAAATGGCTTCTCTCCAGTATTTCTAAACTGAACCTTGTATTGCTCTCTGGATATATGGAGCTCTAATACCATTTTTA AGATACTGAATCAGAACACAGAAGTGTTTATTGATAGAAAATCTCTATTACACCTTAATATTCACGAGAAAACCATCCCT CCCCATTTTCCTTTCCTATTCGAGGTAAACTCCCCATCCTTCTCCTTCTATTATTTTTAACCTACCATCATCTCAATCTC TCTACTAACTTCCTAACAAACTATTCCAGTCAACAAATGGAGTTATCTACCTCGTCATTTGATCTATTCAGCTAACTCCA CCTAGTGGGAAAATATTTTAATCTTGGGTCATTGTTGAGTACAAAGGAAAAAAGAAATCATTTGGTGTTTTGTGAAACGT ATCAATAAGCTAGACACATATTTTGAGTTGTTTCATTCCATAAATTAATTCTTAAGAAATCCACATTGAATAAGCGGATT CACTCATTTTACAACCAAAGAGTCTTCTGCTCTCGGGGCAGAAGCTATTTGTTAAGCTTTATGTCCGTAGTTTGTATAAT TCTATCTTCGCAAACAAAAAACTCCCATAAGGCATTATGGTTATTTAGTTTTGATAAAGTCCCTCAATTACAGAGCTAAC AAAGGTAAATGCTGATTGCTGAAAGATTTGGTTTAGTTGACTAGATATCCCTCACTTTCTTCCTCTTAATGGCATCTCAG AAAAAAATATCTTCGTTTATCCTCCGTCCATAGACGAGGCGTCGGTCACATTGTTCTCGTCATTTACTAAGCCCTCACAC GCTTCAGTTATTTGCCACGTTGGACTTTACTCTAGAGATATTTTCCCTTAATTGATAAGCCTTCCTTTTTGGGTGTGTAT GTGTTATCCAACTGAATTAGACCTTCCTCTGTTGGTTTATAATCACAGCACATCAATACAATTAAAATCCTATGCTTGTC GATTTCTTGTTTCACATGTTGGTTCTGATTTTTAGCATGTTACATTTTACGCACTATTTGGACGATAAATGTTTGGTAAT TTTTTTTACCTGCAGACAAGAGGACGGGCTCAGGATGATGAAGCAATTGAGAAAATGTTAAATGACCTATCACTCATTAA GAAATTTGAATAAATGTCTTGCAATTGTAATTGGTACTGTGTAACAATAACATCTCACTTGCTTGTAAGCAAACGTGTTT TTCCTTGATTCTATTACGGAAGTCATCACTGGTAATTTTTGTTTTGTGACTTATATCAAGAATGGTTTGACAGAGATGTG TGTTGATGTATGAGATTGTCTCCAACCTGTTATAGTGTAATGAAGTAATTGTGATTATTGTCTAAGTCATGCCTTGCATC CTTCTATGTATAACAAAAATTAAAAAAACATGTTATCCTTCAAGTGATAACCCCATATAAAAACATGTTATCCTCCTATG TATAACAAAAATAACTCGTATGAAACAACCAGATAAATGCTTATAAGAGATGTCGTGGTTGTTTCATGGATTGTAAAGCT ATTCATAAATTGTCACATTCTTATTTTTTATAATTGGAGTAAAGTGCACTCACCCCCCTTGAGGTTTGTTAGAATTACAC TCCACCCCATTCTTATCTAAAATCTACATCCCACCCCATTTTATATAGAGGAAAGTTTAG
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0090700.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCTGGGGAAGAGGAAGAAAACGCCGCAGAACTCAAAATCGGAGACGAGTTTTTGAAGGCAAAGTGCTTGATGAATTG TGAAGTTTCATTGATTCTTGAGCACAAGTATGAGCAGCTTCAACAGTCATCTGATGATCCCATGAATCAAGTTTCTCAGG TATTTGAAAAGTCATTGCAGTATGTGAAACGGTTTAGCCGGTATAAAAATCCTGATGCTGTTAGACAAGTCCGAGAAATT CTTGCCAGATACCAATTGGCCGAGTTTGAGCTGTGTGTCCTAGGCAATCTTTGCCCGGAAACTGTGGAGGAAGCTATTGC TATGGTTCCATCTATCAAGACAAGAGGACGGGCTCAGGATGATGAAGCAATTGAGAAAATGTTAAATGACCTATCACTCA TTAAGAAATTTGAATAA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0090700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQSSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREI LARYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAQDDEAIEKMLNDLSLIKKFE
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR21297
1 138 138 3.7E-84 –
PANTHER
PTHR21297:SF3
1 138 138 3.7E-84 –
Gene3D
G3DSA:1.20.1250.40
2 138 137 1.2E-44
IPR038324
SUPERFAMILY
SSF47819
3 136 134 7.85E-39
IPR010997
SMART
SM00657
16 138 123 5.2E-57
IPR006590
Pfam
PF03874
23 132 110 7.6E-23
IPR005574

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000166
Molecular function Nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
Subterm of
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0006352
Biological process DNA-templated transcription, initiation Any process involved in the assembly of the RNA polymerase preinitiation complex (PIC) at the core promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. The initiation phase ends just before and does not include promoter clearance, or release, which is the transition between the initiation and elongation phases of transcription.
Subterm of
Part of
GO:0030880
Cellular component RNA polymerase complex Any complex that possesses RNA polymerase activity; generally comprises a catalytic subunit and one or more additional subunits.
Subterm of
GO:0044237
Biological process Cellular metabolic process The chemical reactions and pathways by which individual cells transform chemical substances.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0090700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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