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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR010997
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We have found 24 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.677s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0122329.1
n.a. PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like [Cicer arietinum] gi|502153857|ref|XP_004509486.1| chr0 54687130 54691483 -
2 domain predictions
3 GO terms
Lj0g3v0315759.1
n.a. PREDICTED: exosome component 10-like [Glycine max] gi|356565747|ref|XP_003551099.1| chr0 164829502 164837304 +
2 domain predictions
3 GO terms
Lj0g3v0321759.1
n.a. PREDICTED: DNA-directed RNA polymerase III subunit rpc9-like [Glycine max] gi|356569570|ref|XP_003552972.1| chr0 167976211 167982575 -
2 domain predictions
3 GO terms
Lj0g3v0321759.3
n.a. PREDICTED: DNA-directed RNA polymerase III subunit rpc9-like [Glycine max] gi|356569570|ref|XP_003552972.1| chr0 167979124 167982575 -
2 domain predictions
3 GO terms
Lj1g3v3976000.1
n.a. PREDICTED: exosome component 10-like isoform X1 [Cicer arietinum] gi|502107238|ref|XP_004493202.1| chr1 47137183 47148386 +
2 domain predictions
3 GO terms
Lj2g3v1643230.1
n.a. PREDICTED: Werner syndrome ATP-dependent helicase homolog [Glycine max] gi|356569961|ref|XP_003553162.1| chr2 25456755 25470290 +
2 domain predictions
3 GO terms
Lj2g3v1643230.3
n.a. PREDICTED: Werner syndrome ATP-dependent helicase-like isoform X2 [Cicer arietinum] gi|502129737|ref|XP_004500408.1| chr2 25466364 25470290 +
2 domain predictions
3 GO terms
Lj3g3v2905160.1
n.a. Exosome complex exonuclease RRP6 [Medicago truncatula] gi|357471299|ref|XP_003605934.1| chr3 36068167 36074786 -
2 domain predictions
3 GO terms
Lj3g3v2906190.1
n.a. Exosome complex exonuclease RRP6 [Medicago truncatula] gi|357471299|ref|XP_003605934.1| chr3 36104263 36111021 -
2 domain predictions
3 GO terms
Lj3g3v2908390.1
n.a. Exosome complex exonuclease RRP6 [Medicago truncatula] gi|357471299|ref|XP_003605934.1| chr3 36196282 36204254 -
2 domain predictions
3 GO terms
Lj6g3v0433990.1
n.a. PREDICTED: DNA-directed RNA polymerase III subunit rpc9-like [Glycine max] gi|356569570|ref|XP_003552972.1| chr6 4098718 4101479 +
2 domain predictions
3 GO terms
Lj6g3v1707190.1
n.a. PREDICTED: DNA-directed RNA polymerase II subunit rpb4-like [Glycine max] gi|356532865|ref|XP_003534990.1| chr6 19280551 19284407 -
2 domain predictions
3 GO terms
LotjaGi1g1v0646900.1
n.a. 3'-5' exonuclease domain-containing family protein; TAIR: AT5G35910.1 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain-containing protein; Swiss-Prot: sp|A9LLI7|RP6L2_ARATH Protein RRP6-like 2; TrEMBL-Plants: tr|A0A151TSU8|A0A151TSU8_CAJCA Exosome component 10; Found in the gene: LotjaGi1g1v0646900 LjG1.1_chr1 120424292 120436386 +
2 domain predictions
3 GO terms
LotjaGi2g1v0108600.1
n.a. 3'-5' exonuclease domain-containing family protein; TAIR: AT5G35910.1 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain-containing protein; Swiss-Prot: sp|A9LLI7|RP6L2_ARATH Protein RRP6-like 2; TrEMBL-Plants: tr|I1MW66|I1MW66_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0108600 LjG1.1_chr2 37435511 37450908 -
2 domain predictions
3 GO terms
LotjaGi3g1v0090700.1
n.a. DNA-directed RNA polymerase II subunit RPB4; TAIR: AT5G09920.1 RNA polymerase II, Rpb4, core protein; Swiss-Prot: sp|O48890|NRPB4_ARATH DNA-directed RNA polymerase II subunit 4; TrEMBL-Plants: tr|I3S6N6|I3S6N6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0090700 LjG1.1_chr3 10280872 10286131 -
2 domain predictions
3 GO terms
LotjaGi3g1v0090700.2
n.a. DNA-directed RNA polymerase II subunit RPB4; TAIR: AT5G09920.1 RNA polymerase II, Rpb4, core protein; Swiss-Prot: sp|O48890|NRPB4_ARATH DNA-directed RNA polymerase II subunit 4; TrEMBL-Plants: tr|A0A0L9VU29|A0A0L9VU29_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0090700 LjG1.1_chr3 10281399 10284244 -
2 domain predictions
3 GO terms
LotjaGi3g1v0466600.1
n.a. 3'-5' exonuclease domain protein; TAIR: AT2G32415.1 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain-containing protein; Swiss-Prot: sp|A9LLI8|RP6L3_ARATH Protein RRP6-like 3; TrEMBL-Plants: tr|A0A151S0B7|A0A151S0B7_CAJCA Exosome complex exonuclease RRP6; Found in the gene: LotjaGi3g1v0466600 LjG1.1_chr3 88201773 88210310 -
2 domain predictions
3 GO terms
LotjaGi5g1v0155200.1
n.a. RNA polymerase II, Rpb4, core protein; TAIR: AT5G62950.1 RNA polymerase II, Rpb4, core protein; Swiss-Prot: sp|O35427|RPC9_MOUSE DNA-directed RNA polymerase III subunit RPC9; TrEMBL-Plants: tr|I3SAG6|I3SAG6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0155200 LjG1.1_chr5 40196070 40201036 +
2 domain predictions
3 GO terms
LotjaGi5g1v0155200.2
n.a. RNA polymerase II, Rpb4, core protein; TAIR: AT5G62950.1 RNA polymerase II, Rpb4, core protein; Swiss-Prot: sp|O35427|RPC9_MOUSE DNA-directed RNA polymerase III subunit RPC9; TrEMBL-Plants: tr|I3SAG6|I3SAG6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0155200 LjG1.1_chr5 40196342 40200423 +
2 domain predictions
3 GO terms
LotjaGi6g1v0046900.1
n.a. ATP-dependent RNA helicase DeaD; TAIR: AT1G31360.1 RECQ helicase L2; Swiss-Prot: sp|Q9CL21|RECQ_PASMU ATP-dependent DNA helicase RecQ; TrEMBL-Plants: tr|A0A0B2QEX8|A0A0B2QEX8_GLYSO Werner syndrome ATP-dependent helicase like; Found in the gene: LotjaGi6g1v0046900 LjG1.1_chr6 8640138 8651823 +
2 domain predictions
3 GO terms
LotjaGi6g1v0059100.1
n.a. RNA polymerase II, Rpb4, core protein; TAIR: AT5G62950.1 RNA polymerase II, Rpb4, core protein; Swiss-Prot: sp|A0JN61|RPC9_BOVIN DNA-directed RNA polymerase III subunit RPC9; TrEMBL-Plants: tr|I3SAG6|I3SAG6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0059100 LjG1.1_chr6 10791272 10794579 +
2 domain predictions
3 GO terms
LotjaGi6g1v0280900.1
n.a. DNA-directed RNA polymerase II subunit rpb4; TAIR: AT4G15950.1 RNA polymerase II, Rpb4, core protein; Swiss-Prot: sp|Q6DBA5|NRPD4_ARATH DNA-directed RNA polymerases IV and V subunit 4; TrEMBL-Plants: tr|A0A151T6X0|A0A151T6X0_CAJCA DNA-directed RNA polymerase II subunit rpb4; Found in the gene: LotjaGi6g1v0280900 LjG1.1_chr6 59734590 59738646 -
2 domain predictions
3 GO terms
LotjaGi6g1v0361700.1
n.a. ATP-dependent RNA helicase DeaD; TAIR: AT1G10930.1 DNA helicase (RECQl4A); Swiss-Prot: sp|Q8L840|RQL4A_ARATH ATP-dependent DNA helicase Q-like 4A; TrEMBL-Plants: tr|G7INR2|G7INR2_MEDTR ATP-dependent DNA helicase RecQ family protein; Found in the gene: LotjaGi6g1v0361700 LjG1.1_chr6 67368666 67383013 -
2 domain predictions
3 GO terms
LotjaGi6g1v0361700.2
n.a. ATP-dependent RNA helicase DeaD; TAIR: AT1G10930.1 DNA helicase (RECQl4A); Swiss-Prot: sp|Q8L840|RQL4A_ARATH ATP-dependent DNA helicase Q-like 4A; TrEMBL-Plants: tr|G7INR2|G7INR2_MEDTR ATP-dependent DNA helicase RecQ family protein; Found in the gene: LotjaGi6g1v0361700 LjG1.1_chr6 67375232 67383008 -
2 domain predictions
3 GO terms