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IPR038324

Source: InterPro

Description

IPR038324 is a Rpb4/RPC9 superfamily.

<p>A major role in the regulation of eukaryotic protein-coding genes is played by the gene-specific transcriptional regulators, which recruit the RNA polymerase II holoenzyme to the specific promoter. The Rpb4 and Rpb7 subunits of yeast RNA polymerase II form a heterodimeric complex essential for promoter-directed transcription initiation. The Rpb4-Rpb7 complex is not required for stable recruitment of polymerase to active preinitiation complexes, suggesting that Rpb4-Rpb7 mediates an essential step subsequent to promoter binding [[cite:PUB00007967]].</p> <p>This superfamily includes DNA-directed RNA polymerase II subunit Rpb4 and DNA-directed RNA polymerase III subunit RPC9.</p>

This description is obtained from EB-eye REST.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 6

Transcript Name Description Predicted domains Domain count
LotjaGi3g1v0090700.1
– DNA-directed RNA polymerase II subunit RPB4; TAIR: AT5G09920.1 RNA polymerase II, Rpb4, core protein; Swiss-Prot: sp|O48890|NRPB4_ARATH DNA-directed RNA polymerase II subunit 4; TrEMBL-Plants: tr|I3S6N6|I3S6N6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0090700
Domains
10
LotjaGi3g1v0090700.2
– DNA-directed RNA polymerase II subunit RPB4; TAIR: AT5G09920.1 RNA polymerase II, Rpb4, core protein; Swiss-Prot: sp|O48890|NRPB4_ARATH DNA-directed RNA polymerase II subunit 4; TrEMBL-Plants: tr|A0A0L9VU29|A0A0L9VU29_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0090700
Domains
10
LotjaGi5g1v0155200.1
– RNA polymerase II, Rpb4, core protein; TAIR: AT5G62950.1 RNA polymerase II, Rpb4, core protein; Swiss-Prot: sp|O35427|RPC9_MOUSE DNA-directed RNA polymerase III subunit RPC9; TrEMBL-Plants: tr|I3SAG6|I3SAG6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0155200
Domains
11
LotjaGi5g1v0155200.2
– RNA polymerase II, Rpb4, core protein; TAIR: AT5G62950.1 RNA polymerase II, Rpb4, core protein; Swiss-Prot: sp|O35427|RPC9_MOUSE DNA-directed RNA polymerase III subunit RPC9; TrEMBL-Plants: tr|I3SAG6|I3SAG6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0155200
Domains
11
LotjaGi6g1v0059100.1
– RNA polymerase II, Rpb4, core protein; TAIR: AT5G62950.1 RNA polymerase II, Rpb4, core protein; Swiss-Prot: sp|A0JN61|RPC9_BOVIN DNA-directed RNA polymerase III subunit RPC9; TrEMBL-Plants: tr|I3SAG6|I3SAG6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0059100
Domains
11
LotjaGi6g1v0280900.1
– DNA-directed RNA polymerase II subunit rpb4; TAIR: AT4G15950.1 RNA polymerase II, Rpb4, core protein; Swiss-Prot: sp|Q6DBA5|NRPD4_ARATH DNA-directed RNA polymerases IV and V subunit 4; TrEMBL-Plants: tr|A0A151T6X0|A0A151T6X0_CAJCA DNA-directed RNA polymerase II subunit rpb4; Found in the gene: LotjaGi6g1v0280900
Domains
11

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 16.67