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SSF47819

Source: SUPERFAMILY

Description

No description is available for this domain.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000166
Molecular function Nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
Subterm of
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0044237
Biological process Cellular metabolic process The chemical reactions and pathways by which individual cells transform chemical substances.
Subterm of

Associated Lotus transcripts 24

Transcript Name Description Predicted domains Domain count
Lj0g3v0122329.1
– PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like [Cicer arietinum] gi|502153857|ref|XP_004509486.1|
Domains
7
Lj0g3v0315759.1
– PREDICTED: exosome component 10-like [Glycine max] gi|356565747|ref|XP_003551099.1|
Domains
8
Lj0g3v0321759.1
– PREDICTED: DNA-directed RNA polymerase III subunit rpc9-like [Glycine max] gi|356569570|ref|XP_003552972.1|
Domains
9
Lj0g3v0321759.3
– PREDICTED: DNA-directed RNA polymerase III subunit rpc9-like [Glycine max] gi|356569570|ref|XP_003552972.1|
Domains
9
Lj1g3v3976000.1
– PREDICTED: exosome component 10-like isoform X1 [Cicer arietinum] gi|502107238|ref|XP_004493202.1|
Domains
19
Lj2g3v1643230.1
– PREDICTED: Werner syndrome ATP-dependent helicase homolog [Glycine max] gi|356569961|ref|XP_003553162.1|
Domains
35
Lj2g3v1643230.3
– PREDICTED: Werner syndrome ATP-dependent helicase-like isoform X2 [Cicer arietinum] gi|502129737|ref|XP_004500408.1|
Domains
11
Lj3g3v2905160.1
– Exosome complex exonuclease RRP6 [Medicago truncatula] gi|357471299|ref|XP_003605934.1|
Domains
12
Lj3g3v2906190.1
– Exosome complex exonuclease RRP6 [Medicago truncatula] gi|357471299|ref|XP_003605934.1|
Domains
10
Lj3g3v2908390.1
– Exosome complex exonuclease RRP6 [Medicago truncatula] gi|357471299|ref|XP_003605934.1|
Domains
17
Lj6g3v0433990.1
– PREDICTED: DNA-directed RNA polymerase III subunit rpc9-like [Glycine max] gi|356569570|ref|XP_003552972.1|
Domains
8
Lj6g3v1707190.1
– PREDICTED: DNA-directed RNA polymerase II subunit rpb4-like [Glycine max] gi|356532865|ref|XP_003534990.1|
Domains
9
LotjaGi1g1v0646900.1
– 3'-5' exonuclease domain-containing family protein; TAIR: AT5G35910.1 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain-containing protein; Swiss-Prot: sp|A9LLI7|RP6L2_ARATH Protein RRP6-like 2; TrEMBL-Plants: tr|A0A151TSU8|A0A151TSU8_CAJCA Exosome component 10; Found in the gene: LotjaGi1g1v0646900
Domains
20
LotjaGi2g1v0108600.1
– 3'-5' exonuclease domain-containing family protein; TAIR: AT5G35910.1 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain-containing protein; Swiss-Prot: sp|A9LLI7|RP6L2_ARATH Protein RRP6-like 2; TrEMBL-Plants: tr|I1MW66|I1MW66_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0108600
Domains
18
LotjaGi3g1v0090700.1
– DNA-directed RNA polymerase II subunit RPB4; TAIR: AT5G09920.1 RNA polymerase II, Rpb4, core protein; Swiss-Prot: sp|O48890|NRPB4_ARATH DNA-directed RNA polymerase II subunit 4; TrEMBL-Plants: tr|I3S6N6|I3S6N6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0090700
Domains
10
LotjaGi3g1v0090700.2
– DNA-directed RNA polymerase II subunit RPB4; TAIR: AT5G09920.1 RNA polymerase II, Rpb4, core protein; Swiss-Prot: sp|O48890|NRPB4_ARATH DNA-directed RNA polymerase II subunit 4; TrEMBL-Plants: tr|A0A0L9VU29|A0A0L9VU29_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0090700
Domains
10
LotjaGi3g1v0466600.1
– 3'-5' exonuclease domain protein; TAIR: AT2G32415.1 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain-containing protein; Swiss-Prot: sp|A9LLI8|RP6L3_ARATH Protein RRP6-like 3; TrEMBL-Plants: tr|A0A151S0B7|A0A151S0B7_CAJCA Exosome complex exonuclease RRP6; Found in the gene: LotjaGi3g1v0466600
Domains
18
LotjaGi5g1v0155200.1
– RNA polymerase II, Rpb4, core protein; TAIR: AT5G62950.1 RNA polymerase II, Rpb4, core protein; Swiss-Prot: sp|O35427|RPC9_MOUSE DNA-directed RNA polymerase III subunit RPC9; TrEMBL-Plants: tr|I3SAG6|I3SAG6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0155200
Domains
11
LotjaGi5g1v0155200.2
– RNA polymerase II, Rpb4, core protein; TAIR: AT5G62950.1 RNA polymerase II, Rpb4, core protein; Swiss-Prot: sp|O35427|RPC9_MOUSE DNA-directed RNA polymerase III subunit RPC9; TrEMBL-Plants: tr|I3SAG6|I3SAG6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0155200
Domains
11
LotjaGi6g1v0046900.1
– ATP-dependent RNA helicase DeaD; TAIR: AT1G31360.1 RECQ helicase L2; Swiss-Prot: sp|Q9CL21|RECQ_PASMU ATP-dependent DNA helicase RecQ; TrEMBL-Plants: tr|A0A0B2QEX8|A0A0B2QEX8_GLYSO Werner syndrome ATP-dependent helicase like; Found in the gene: LotjaGi6g1v0046900
Domains
36
LotjaGi6g1v0059100.1
– RNA polymerase II, Rpb4, core protein; TAIR: AT5G62950.1 RNA polymerase II, Rpb4, core protein; Swiss-Prot: sp|A0JN61|RPC9_BOVIN DNA-directed RNA polymerase III subunit RPC9; TrEMBL-Plants: tr|I3SAG6|I3SAG6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0059100
Domains
11
LotjaGi6g1v0280900.1
– DNA-directed RNA polymerase II subunit rpb4; TAIR: AT4G15950.1 RNA polymerase II, Rpb4, core protein; Swiss-Prot: sp|Q6DBA5|NRPD4_ARATH DNA-directed RNA polymerases IV and V subunit 4; TrEMBL-Plants: tr|A0A151T6X0|A0A151T6X0_CAJCA DNA-directed RNA polymerase II subunit rpb4; Found in the gene: LotjaGi6g1v0280900
Domains
11
LotjaGi6g1v0361700.1
– ATP-dependent RNA helicase DeaD; TAIR: AT1G10930.1 DNA helicase (RECQl4A); Swiss-Prot: sp|Q8L840|RQL4A_ARATH ATP-dependent DNA helicase Q-like 4A; TrEMBL-Plants: tr|G7INR2|G7INR2_MEDTR ATP-dependent DNA helicase RecQ family protein; Found in the gene: LotjaGi6g1v0361700
Domains
36
LotjaGi6g1v0361700.2
– ATP-dependent RNA helicase DeaD; TAIR: AT1G10930.1 DNA helicase (RECQl4A); Swiss-Prot: sp|Q8L840|RQL4A_ARATH ATP-dependent DNA helicase Q-like 4A; TrEMBL-Plants: tr|G7INR2|G7INR2_MEDTR ATP-dependent DNA helicase RecQ family protein; Found in the gene: LotjaGi6g1v0361700
Domains
36

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 4.17