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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0090700 |
| Transcript ID | LotjaGi3g1v0090700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA-directed RNA polymerase II subunit RPB4; TAIR: AT5G09920.1 RNA polymerase II, Rpb4, core protein; Swiss-Prot: sp|O48890|NRPB4_ARATH DNA-directed RNA polymerase II subunit 4; TrEMBL-Plants: tr|A0A0L9VU29|A0A0L9VU29_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0090700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:10281399..10284244) extracted from Lotus japonicus Gifu genome v1.2.
GATGATTCTATTGTGTTACATCATGTTGGATTGCTTGAGCATGTTTTTAGTTTGGTATAATTGCTATCACCTTTTGATTT CACTCTAAACTCTAGATTTTTTTAGAGTTTTTGAAGGCAAAGTGCTTGATGAATTGTGAAGTTTCATTGATTCTTGAGCA CAAGTATGAGCAGCTTCAACAGTCATCTGATGATCCCATGAATCAAGTTTCTCAGTGAGTTAATTCCTTTATCATGTTTT TGTGTTATTTTGACATAAAAGTCAAAAATACATTTTTTATGGCTTGAGAACAATGAGCTTTTACCTTAATAAAATATATA ATCTGGTTTCTTAATGCTTCCAAGGTCTTTGTCTATTGATATAATTGCTGAAAAAAGTGTTCTACTGTGGTGTCCTTTAA CTGTGATAGTATTCTTAAAACTTCCCAATCCCAGTTCACATTGATCCAATATTAGATTTGACATTGATTGAGATGGAAAG GAACAAAGTCGCTAACCATGATTAGCACCTTATATTGTATTGATATCTTCCCTCTTTTTGCAGGGTATTTGAAAAGTCAT TGCAGTATGTGAAACGGTTTAGCCGGTATAAAAATCCTGATGCTGTTAGACAAGTCCGAGAGTATCCTGCAAACTGAGAT GATGATTCATTTTCTATTTCTACTTTTCCTTATATATATTTCAATCAAGATTTGCTGGTGTCCATTTCATGTTCTTTCAT AGTTATAATTGGCCTAATTTTCTTTTGTCTATTGACATGTATCTAAGTTAGTACATCTGAGATAGTTGGTCTATGTTAAT TCCATTTTTCATGAAAGGGAATAATAAGTATACATTGAAGTTTAAATCCTTGTATCAGAATTGTGATCTTAACTGTCATA AAGAATTCTTGCCAGATACCAATTGGCCGAGTTTGAGGTAATATTCCGATTTCCTTCATGAACTCTGTTTAGGAAACAAG TTTTCACATTTAATTCAGAAAAAAAAGTGAGCAAGTTCTCATTTTACACAATACAATATATAACTATCGGTTTAATGGAT TTACTGCAGCTGTGTGTCCTAGGCAATCTTTGCCCGGAAACTGTGGAGGAAGCTATTGCTATGGTTCCATCTATCAAGGT AGATATAATTCTCTTCTCCTTTGTGTAGATTTTTCCTTATTTTTCGTGTGCGCGCGTGAGGTTGTGTGGGAGGAAGGGAG TTTTTGGTGACTGACTTAAATGGTGGTGGGCTGACTTAAATGGTGAAAACCCCAAAGTTTCGGGCCATTTATGGGTACCT CTTCCCATGCTTGTTCATTATTTACAGATCGTTCACCATCCCCATTCATACCCGCCCACCACATGTTCCTTATTATGATG CTTTTCTTCTCTTGTTCAATATGATGGTTTCCGCCCACCACTTTGTCCTTGTGTAGTGCTTGTTCTGGTTTCATTTCTTC CTCTGAAACCTATGATAGACGACCAAAGTCATACCTTCACTGAAATTGTTTGACAAGTGCCTTTAAGAATCCACAACCTA TATCATGTTTGTTTGCGCCATCCCCTCCCTATTATCAAGTAAGGGAAAGGCTTAGAATTTTCTTCCTTTGAAATTTGTTT TGAGCTTCTTCTTGTCCAGTATTTTCTTGATGTCTAACTGTGGCACCACTATGATTAGGCAACCATACTTATCTTTTCCA TTGATCACTGATTCTCTATTGCTTCTAATGATCTGAAAATGGCTTCTCTCCAGTATTTCTAAACTGAACCTTGTATTGCT CTCTGGATATATGGAGCTCTAATACCATTTTTAAGATACTGAATCAGAACACAGAAGTGTTTATTGATAGAAAATCTCTA TTACACCTTAATATTCACGAGAAAACCATCCCTCCCCATTTTCCTTTCCTATTCGAGGTAAACTCCCCATCCTTCTCCTT CTATTATTTTTAACCTACCATCATCTCAATCTCTCTACTAACTTCCTAACAAACTATTCCAGTCAACAAATGGAGTTATC TACCTCGTCATTTGATCTATTCAGCTAACTCCACCTAGTGGGAAAATATTTTAATCTTGGGTCATTGTTGAGTACAAAGG AAAAAAGAAATCATTTGGTGTTTTGTGAAACGTATCAATAAGCTAGACACATATTTTGAGTTGTTTCATTCCATAAATTA ATTCTTAAGAAATCCACATTGAATAAGCGGATTCACTCATTTTACAACCAAAGAGTCTTCTGCTCTCGGGGCAGAAGCTA TTTGTTAAGCTTTATGTCCGTAGTTTGTATAATTCTATCTTCGCAAACAAAAAACTCCCATAAGGCATTATGGTTATTTA GTTTTGATAAAGTCCCTCAATTACAGAGCTAACAAAGGTAAATGCTGATTGCTGAAAGATTTGGTTTAGTTGACTAGATA TCCCTCACTTTCTTCCTCTTAATGGCATCTCAGAAAAAAATATCTTCGTTTATCCTCCGTCCATAGACGAGGCGTCGGTC ACATTGTTCTCGTCATTTACTAAGCCCTCACACGCTTCAGTTATTTGCCACGTTGGACTTTACTCTAGAGATATTTTCCC TTAATTGATAAGCCTTCCTTTTTGGGTGTGTATGTGTTATCCAACTGAATTAGACCTTCCTCTGTTGGTTTATAATCACA GCACATCAATACAATTAAAATCCTATGCTTGTCGATTTCTTGTTTCACATGTTGGTTCTGATTTTTAGCATGTTACATTT TACGCACTATTTGGACGATAAATGTTTGGTAATTTTTTTTACCTGCAGACAAGAGGACGGGCTCAGGATGATGAAGCAAT TGAGAAAATGTTAAATGACCTATCACTCATTAAGAAATTTGAATAA
CDS sequence (LotjaGi3g1v0090700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATTGTGAAGTTTCATTGATTCTTGAGCACAAGTATGAGCAGCTTCAACAGTCATCTGATGATCCCATGAATCAAGT TTCTCAGGTATTTGAAAAGTCATTGCAGTATGTGAAACGGTTTAGCCGGTATAAAAATCCTGATGCTGTTAGACAAGTCC GAGAAATTCTTGCCAGATACCAATTGGCCGAGTTTGAGCTGTGTGTCCTAGGCAATCTTTGCCCGGAAACTGTGGAGGAA GCTATTGCTATGGTTCCATCTATCAAGACAAGAGGACGGGCTCAGGATGATGAAGCAATTGAGAAAATGTTAAATGACCT ATCACTCATTAAGAAATTTGAATAA
Protein sequence (LotjaGi3g1v0090700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNCEVSLILEHKYEQLQQSSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILARYQLAEFELCVLGNLCPETVEE AIAMVPSIKTRGRAQDDEAIEKMLNDLSLIKKFE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 114 | 114 | 7.3E-67 | – | |
| PANTHER | 1 | 114 | 114 | 7.3E-67 | – | |
| Pfam | 1 | 108 | 108 | 5.3E-22 | ||
| SMART | 1 | 114 | 114 | 1.8E-46 | ||
| SUPERFAMILY | 1 | 112 | 112 | 1.79E-30 | ||
| Gene3D | 1 | 114 | 114 | 1.6E-35 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Biological process | DNA-templated transcription, initiation | Any process involved in the assembly of the RNA polymerase preinitiation complex (PIC) at the core promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. The initiation phase ends just before and does not include promoter clearance, or release, which is the transition between the initiation and elongation phases of transcription. | ||
| Cellular component | RNA polymerase complex | Any complex that possesses RNA polymerase activity; generally comprises a catalytic subunit and one or more additional subunits. | ||
| Biological process | Cellular metabolic process | The chemical reactions and pathways by which individual cells transform chemical substances. |
Expression pattern of LotjaGi3g1v0090700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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