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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0094100 |
Transcript ID | LotjaGi3g1v0094100.3 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | TATA-box-binding protein; TAIR: AT3G13445.2 TATA binding protein 1; Swiss-Prot: sp|Q42808|TBP_SOYBN TATA-box-binding protein; TrEMBL-Plants: tr|K7MHA4|K7MHA4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0094100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:11557436..11562125) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCTGACCAAGGATTGGAAGGAAGCCAGCCGGTTGATCTACAGAAGCACCCTTCTGGGATTGTGCCTACCCTCCAGTG AGTACCCATTTTATTATTTGATTACAAGTGCTGGCTTCATGGGTTGCATTTTTTTAGCATCGGATTGATTACCCTTGCGT TTCGTTTGCTTTATTGAATGATTAGACAGTTTTGTGTTGAGAACTGACTTGGTGTTGTTTGTATCCAATTGAGGCGGTTT CCCTGTGCTGTCTTGTCTTTTGACATGTATGATGATGATGATGTTGTTGTTGTAAATCTAGCTTTTAAATAGTGTTGTTA ATGTTGGAGAGCCAAAAACCCACTATATTTGACAAATAGTGGCGGATTATATATATTGGCCATGGCGAAGAGCTAAAAAC CTGCTATGGTGGATATTTGATGACACTGCTTTTGAATAATAATGGAGGATGTTGAGTGCTGTCACTGTGACTGATATTGT TGCTGGTTACATTGTGGTTTCAAAAGGGGTGAATCAGGTATGGCCTGATGGGTTTACCTAGACTTACAATAGTGATAATT AGGTTGCCATTTGTCCAATCCTAGTGGCTTGGATTAAGGGAAAAGGTCTTATCTGGTTAGCGCCTCTATTATTTCAAATT TCATTCATGGTAATTACCATTTATAACCGGAAATAGCAATGGGTGTGGCTACTTAACCTTATTGGAGCTGATGAACCGAA TATGGGATGAGTTGTAACACAGGCTGACTGGTTTAATTTTAAATTTTTGGAAGTCCATATATCCATTGAATAACCAGTAA ATACTTGACAAATCTTGCTAGGTATAGAGCCCATGTAAGACGGTTTCACCGTCAATGCACTCACAAATTTAATATTGCTG GGGTTTTAGTTTCTACCTTGTTATATTGTGCATAGTATTTATATATCTTCCTATAAGATTATCCATATTGCTGCAAAAAG ATAGGTGATCGGTTCCTACTTTGATCTACCACTAGCTACTTTTGATCAATAACCTTTGCCTATAAATGCATTGGAATATT TGATAACTTTTCTTCTATTCGCATTGGAATTCAGAATTTTGGAGATTGTACCATATTTCAAGCTTCATGGTTTAAGTATC TTGGATCCATCATACAATGATGGAGAAGTAAATGCAAACCATAGTATTCAATCCTAGTGCCTGAAATGAAAGTGTGCTTT AGTTATTATTTGTGATACGAAATATTATTCAAGATTAAGGAATTTTTTTACTGAACATCTATAAAACCTATGTCACATGG AAGTGATGGAACAAGAGATAGGATGATGAGTACAGACTTGTACAGTTTCATCGAGAGCATAAGCTCAATTTTGAAAAAAT AAAACAGAAAGTTTTGGTGGGTGAATGAACACGAAAGATAAGATGGGATTATGAGTACTTTGAGCTAGTTGGACAGCTTC TCTAATGTAAGAGATGTTAGAATGTTTTTGTAACTAGTTTGAGCTTTTATGGAGAAGACATGCAAAAGCCTCAGCAAGGA GAGTAATTTTGAGGGAGGTTAGCTTAATAGTTACAAGTATAGGGAGATAACAAAATTTTAGTCCTAACCATTAAGATATG AATCAACATCAGATATTTTGTCATTGTTTGATTCATATTAGCCGACCTCACCTTATGGGACATGACTTTTATTGTTGCTT CTATTCACATTGGAATATCTCATAATGTTTATATTTATAATTTTCTTGGGCATAAGTAATAAATTTGATTCTATTTAGAT TGGCATATCTAGAAACTTTTCTTTTTGCATTGGAATTATCTAATAATCAAATTGTTTGTAATACCAGAAATATAGTGTCA ACTGTCAATTTGGACTGTAAGTTGGACCTCAAAACCATTGCACTTCAGGCTCGTAATGCAGAGTATAATCCCAAGGCAAG TATCAATTGCTGATAGTGAATTTCACTTAAATTCATGTATATCCTGCACTGTGAAGTTTAACTTGTTGGTCGTTTATATC CTACTTTGTGAAAATCATTGCTTTTCTATCTGGGCAAGAGAAGCTCGGTTGATCTAATACTACTATTTTATATTAATATC ACTTTTGATATCAGCTACTTGTGGCTTCTCTCCTGTTATTCAAAATAATAATGAGCCAATGTGGTAGATGCACTTGTTCT AGCTTGTCATTTGTAATTTTATGCAGTGCTGATATATGTGATATATTTGCTTTCAGCGTTTTGCTGCCGTCATCATGAGG ATCAGGGAACCAAAAACAACTGCACTTATCTTTGCTTCTGGCAAGATGGTATGGTTCTTTGCTGCTAGTGCTACTTCTGT CATAGAAGTACATTTTGTTCTTCTTGTTCGCATTGTCCTCATAAAAGTGTATATGCAGTTGTATGTTTGTTATGAACTTA TGATAGTTCCGAGTTGTATGGTTCTCTTATTGAATCCCATTTTCTTATCTCCTACATTTTAATTAACTGCAATTGAAAGA TCAATAGATGGTCTGGTGTGAATTGGTTACTATATCAAATTTGGATTTGTGCATTTGCCTCTAGTTTATCATTGGAGATG ATTGTAGCATGTTTGCAGACACAATTGTCATAATTGCGATAGTAGCAAGAATTAAGATACGATTCATATAATTTTTTATG TTGGTCTTCACCCAATCGGTACAGATCACATGTATTATTGTCACTAGAACGATAGGAATGTTGATTCTTCTGTGATTCTG GCTTTTCAAATCTTGGAGGGATAAGGAGCTGAATAGCCACCATACGGTGACAAATTTGAGGTGTTGATGGCTGGATGTGG CACGGTTAACATTGGTGCAGAGGTTTGCAGCTCTGCGTAAACTAGGAAAGGACTTGGATACCCTGTAACTCTGCCTAGAT GAAAGTGCCCAGAGAACCAGTAATCAGGGCATGGGGCTGCTCCATTGATAGTGAGCCCCAGGTGGGATGAGGGTCTGTCA CTGTTAATGAGGGTAGTGGGATCAGTATGTGGTAAAATGCGCCTCAGGTTTGTAAATCAGAGATGGGTAGTGGCCCTGGA AAGAGGAGTAAAACTCGCAGCTATAGAAATACTGGGTTTTGCGGAAAGAAATGTAGTGGAGAAATCCAAATTATTAATGT ATATTAAAGAAAATAGTGAGATTATTATTTTATTTCTATATTCAGTTGTACTATATGGGAAAAATATATGTTATGCTACT TCAATAATTGATCACGAACCTTACAATTCACAATTTGGAGAATGGCCTTCTGATAACTTGACAAAATTTATCTGCTTTTT GCTTAAAGGTCTAATGTTTCTTTTTCAAATCCAAATTAATCAGCATGGTGCTTGTAAAGGGCTTTTATTTCTTACTGTGT TAAACTTTAACTGGTATGACCAGGTTTGTACTGGAGCTAAGAGTGAGCAACAGTCGAAATTGGCAGCAAGGAAGGTATGT TATGAATCTTGTTGGTTTTTTTTAATCTCATTCATCCTGTATATATCATTGATGTTTTCCAAGTGGAGGACTTTGAGGTT AATTATAATTAGACCGGAGAACAAGCCTTTTGTGTTGGCTTGGTTTTGGAGTTGAAGGAGCTTCTTATACTAATGGAGGA GGATGGATGGTTTTGTAGTACTCATTTGTTTTGTAAAAGCTTGATGCAACATGTTGCTATCTTTAGTTGGATTTGGGAAG TTCTTTAGGCTTCAAAATCATAGTATATCTAAATTTTTTTCGCTTTCCCCTTGCTTTTCAGTATGCTCGTATTATTCAAA AACTTGGTTTCAACGCTAAATTTAAGGTACTACTACTACTACTCATTCTCTTTGCTGAGATTATTTCGTTCTTTATATTT TATTTGCTATTTTTCTTATACCACCAATGGAGTGCTTGATTACCAATTCGTTCCTTTTGTATCATGCTTTAGGATTTCAA GATTCAGAACATTGTTGGTTCTTGTGATGTCAAGTTCCCAATACGGCTGGAGGGTCTTGCATATTCCCATGGTGCTTTCT CCAGTGTAAGTTATTTGTTTATTTTTCATAGAATTCTGAGGGTTGGTTTGGGCTTGTACTTAATTTTACGTTAAAACTAA TCTTTATTTCACAATTGATGTTGGGCAATTGTATGTTTGTTTAGTGATATAATCTAATTTGTATGGGTGTTTTATTGAGC TTTCTTCCTGAGGCGAAATTGTCTACAGAGAAACTGTATTTTGTCCAAAATACCATGTTGCAAAAATATCTAACACATTT ATTGACTCGTACTGAGATACAGATGCATAGCCAAACACTATATACATATATGATGAATGGTGATTCTTAACAAGCAGTTT TATGAATCATTATGCTTCGTGGTAAAGGAAGTGTAGATGATGGAAAAGACCATCTTCTCTGTGCATGTGCATATAGTTTC CTCTAGTCTTTTTATATGTGCGTTAAAGTCTAGAACTTGAGGAAAATATATGCTGAACTTGCTTGTTTGGGGTGTTAGTA TGAACCAGAGCTGTTTCCAGGGCTTATATACCGTATGAAGCAACCCAAGATTGTCTTGCTTATATTTGTCTCTGGAAAAA TTGTTCTAACAGGGGCTAAGGTATTTTTTTTACTTTCAATTCCTCTTTATAATCTTCCCCTCCCTCCCCCATTTTTTCCC GGTTTGCTTTATTTTTTATGTTTGTTGTTTTCTTTTTATTTTTTAGGTGA
CDS sequence (LotjaGi3g1v0094100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGACCAAGGATTGGAAGGAAGCCAGCCGGTTGATCTACAGAAGCACCCTTCTGGGATTGTGCCTACCCTCCAAAA TATAGTGTCAACTGTCAATTTGGACTGTAAGTTGGACCTCAAAACCATTGCACTTCAGGCTCGTAATGCAGAGTATAATC CCAAGCGTTTTGCTGCCGTCATCATGAGGATCAGGGAACCAAAAACAACTGCACTTATCTTTGCTTCTGGCAAGATGGTT TGTACTGGAGCTAAGAGTGAGCAACAGTCGAAATTGGCAGCAAGGAAGTATGCTCGTATTATTCAAAAACTTGGTTTCAA CGCTAAATTTAAGGATTTCAAGATTCAGAACATTGTTGGTTCTTGTGATGTCAAGTTCCCAATACGGCTGGAGGGTCTTG CATATTCCCATGGTGCTTTCTCCAGTTATGAACCAGAGCTGTTTCCAGGGCTTATATACCGTATGAAGCAACCCAAGATT GTCTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGGGCTAAGATTTTTTCCCGGTTTGCTTTATTTTTTATGTT TGTTGTTTTCTTTTTATTTTTTAGGTGA
Protein sequence (LotjaGi3g1v0094100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADQGLEGSQPVDLQKHPSGIVPTLQNIVSTVNLDCKLDLKTIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMV CTGAKSEQQSKLAARKYARIIQKLGFNAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKI VLLIFVSGKIVLTGAKIFSRFALFFMFVVFFLFFR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 159 | 159 | - | – | |
PANTHER | 5 | 176 | 172 | 9.3E-137 | – | |
PANTHER | 5 | 176 | 172 | 9.3E-137 | ||
SUPERFAMILY | 21 | 114 | 94 | 6.44E-34 | – | |
CDD | 22 | 176 | 155 | 1.08497E-118 | ||
Pfam | 24 | 103 | 80 | 4.6E-33 | ||
PRINTS | 25 | 40 | 16 | 6.1E-69 | ||
Gene3D | 26 | 177 | 152 | 3.9E-76 | ||
Gene3D | 30 | 115 | 86 | 3.9E-76 | ||
PRINTS | 49 | 68 | 20 | 6.1E-69 | ||
ProSitePatterns | 52 | 101 | 50 | - | ||
PRINTS | 68 | 86 | 19 | 6.1E-69 | ||
SUPERFAMILY | 106 | 180 | 75 | 8.01E-25 | – | |
Pfam | 112 | 176 | 65 | 9.2E-27 | ||
PRINTS | 115 | 131 | 17 | 6.1E-69 | ||
PRINTS | 139 | 154 | 16 | 6.1E-69 | ||
PRINTS | 158 | 174 | 17 | 6.1E-69 | ||
Phobius | 160 | 193 | 34 | - | – | |
TMHMM | 177 | 194 | 18 | - | – | |
Phobius | 194 | 195 | 2 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
Biological process | DNA-templated transcription, initiation | Any process involved in the assembly of the RNA polymerase preinitiation complex (PIC) at the core promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. The initiation phase ends just before and does not include promoter clearance, or release, which is the transition between the initiation and elongation phases of transcription. |
Expression pattern of LotjaGi3g1v0094100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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